Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

48314099 .. 48316833

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTCGGAAGGCGACATGGCGGTTATTAAACCTAAGATGTTGAAGTCTTATATATGGCTTCAGACTACTGATGGTTCAATCCAACAAGTGGAGCAAGAGGTTGCCATGTTTTGCCCATTGATATGTCGAGAAGTTATACAAAAAGGGATGGGATCTTCCAAGACCCATGCGATATCTCTTCCAGAAAGAGTAAATACTGCCATGTTGAGCCTAATTCTTGATTACTGCAGGTTTCATCAAGTACTGGGTCGCTCTAATAAGGAATGCAAGTCGTTTGATGAAAAATTTATTCGAATGGACACGCAGAGGCTCTGTGAGTTGACATCAGCTGCTGATAGCCTCCAGTTAAAGCCATTGGTTGATCTGACCAGTCGTGCTCTTGCACGAATAATTGAAGGGAAAACGCCTGAGGAGATACGTGAGATATTTCATCTTCCCGATGATCTTACAGAGGAAGAGAAGTTGGAGCCATTGAAAAATGTGACTGATGATCCACGGATACGGCTTTTGAATCGACTGTATGCAAGAAAGAGGAAAGAACTTAAGGAAAGAGAGAAATTGAAGAATACTGAGAATGGAGAGCGAAATGATGACCGTTCAGTAGACGATCTCTTGTCATTCATTAACGGAGAAATTGGAGATTCCAAAGAGATCAAATCATCCAAGAATAAAAAGAAGAATCGTAGAAGAAAAGATCAACAGAAAAATAATTGTCTATATGAGGCCAATGGCAGCCATGAGGAGCCGAAAAGTTTAAAGTTTGTTTGTCCCAGTGACGAAGTCAACAAATTTAGGCCCAGTCCCAGTTTGACATTAACGTTACAAGATCTGGAACATGACAGTCTGAATGATCAGCTTGAGTTTGTTGATGGTGATATCGATGATGAGATTGATCCAGCTTTAAAAGCACAAATTGATAGGGAGGTTGAAGATTTTGCTCGGAGGTTGAATTCTGACTGGCCTCAAAGGATGCAAGAAATTCTATCGTTGGGTCAAGAAAGGAGGCGGGCGCAATTTTCCATTAACGGAAATGATTCTTTAAGAAGATATGCTTGTATGTTCTTATTCCCTCTCATTTTTTTTCCCTTCTCCCGCTTTTACTTATTTTTATTATTTTATTCTATTTATTTATTTTTTTGGTCTATACTCTTGCCACATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

387

Amino Acids

45.27

Weight (kDa)

5.88

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	117 - 155	1.2e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	3 cut(s)	20, 1006, 1093
AclI	AACGTT	1 cut(s)	818
AclWI	GGATC	3 cut(s)	160, 485, 887
AcsI	RAATTY	4 cut(s)	284, 788, 949, 978
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	8 cut(s)	43, 78, 395, 475, 511, 562, 929, 949
AluBI	AGCT	3 cut(s)	329, 856, 899
AluI	AGCT	3 cut(s)	329, 856, 899
Alw21I	GWGCWC	1 cut(s)	379
AlwI	GGATC	3 cut(s)	160, 485, 887
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	723, 794, 959
ApeKI	GCWGC	2 cut(s)	329, 732
ApoI	RAATTY	4 cut(s)	284, 788, 949, 978
Asp700I	GAANNNNTTC	1 cut(s)	1033
AspLEI	GCGC	1 cut(s)	1012
AspS9I	GGNCC	1 cut(s)	795
AsuHPI	GGTGA	1 cut(s)	884
AsuII	TTCGAA	1 cut(s)	292
AxyI	CCTNAGG	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	316, 744
BccI	CCATC	3 cut(s)	65, 142, 863
BceAI	ACGGC	1 cut(s)	518
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	850
BfmI	CTRYAG	1 cut(s)	226
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	2 cut(s)	330, 733
BlsI	GCNGC	2 cut(s)	331, 734
BmcAI	AGTACT	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	2 cut(s)	468, 744
BmrI	ACTGGG	4 cut(s)	254, 765, 792, 798
BmsI	GCATC	1 cut(s)	960
BmuI	ACTGGG	4 cut(s)	254, 765, 792, 798
BpmI	CTGGAG	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	878
Bsa29I	ATCGAT	1 cut(s)	879
BsaAI	YACGTR	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	7 cut(s)	249, 343, 369, 771, 798, 804, 962
Bse21I	CCTNAGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	3 cut(s)	153, 659, 975
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	399, 561
BseNI	ACTGG	7 cut(s)	249, 343, 369, 771, 798, 804, 962
BseRI	GAGGAG	2 cut(s)	425, 755
BseXI	GCAGC	2 cut(s)	316, 744
BshFI	GGCC	3 cut(s)	725, 796, 961
BshVI	ATCGAT	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	753, 786
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	753, 786
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	725, 796, 961
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	379
BspACI	CCGC	3 cut(s)	20, 1006, 1093
BspANI	GGCC	3 cut(s)	725, 796, 961
BspCNI	CTCAG	2 cut(s)	400, 562
BspDI	ATCGAT	1 cut(s)	879
BspLI	GGNNCC	2 cut(s)	468, 744
BspMAI	CTGCAG	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	160, 485, 887
BspT104I	TTCGAA	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	542
BsrI	ACTGG	7 cut(s)	249, 343, 369, 771, 798, 804, 962
BssECI	CCNNGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	519, 596, 842
Bst6I	CTCTTC	2 cut(s)	183, 450
BstAFI	CTTAAG	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	1008
BstDEI	CTNAG	3 cut(s)	33, 408, 570
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	153, 659, 975
BstHHI	GCGC	1 cut(s)	1012
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	316, 744
BstX2I	RGATCY	2 cut(s)	152, 826
BstYI	RGATCY	2 cut(s)	152, 826
Bsu15I	ATCGAT	1 cut(s)	879
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	725, 796, 961
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	153, 659, 975
BtsIMutI	CAGTG	1 cut(s)	778
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	1008
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	1012
Cfr13I	GGNCC	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	879
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	7 cut(s)	16, 106, 167, 202, 737, 836, 1157
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	33, 408, 570
DraI	TTTAAA	2 cut(s)	756, 903
Eam1104I	CTCTTC	2 cut(s)	183, 450
EarI	CTCTTC	2 cut(s)	183, 450
Eco32I	GATATC	2 cut(s)	174, 877
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	949
EcoRV	GATATC	2 cut(s)	174, 877
FaeI	CATG	7 cut(s)	19, 109, 170, 205, 740, 839, 1160
FalI	AAGNNNNNCTT	2 cut(s)	1036, 1068
FaqI	GGGAC	2 cut(s)	753, 786
FatI	CATG	7 cut(s)	15, 105, 166, 201, 736, 835, 1156
FauI	CCCGC	2 cut(s)	999, 1100
FbaI	TGATCA	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	330, 733
FokI	GGATG	3 cut(s)	160, 646, 982
Fsp4HI	GCNGC	2 cut(s)	330, 733
GlaI	GCGC	1 cut(s)	1011
GluI	GCNGC	2 cut(s)	330, 733
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	725, 796, 961
HhaI	GCGC	1 cut(s)	1012
Hin1II	CATG	7 cut(s)	19, 109, 170, 205, 740, 839, 1160
Hin6I	GCGC	1 cut(s)	1010
HinP1I	GCGC	1 cut(s)	1010
HincII	GTYRAC	2 cut(s)	321, 784
HindII	GTYRAC	2 cut(s)	321, 784
HinfI	GANTC	4 cut(s)	511, 641, 679, 1034
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	3 cut(s)	321, 604, 784
Hpy188I	TCNGA	6 cut(s)	7, 63, 366, 846, 942, 955
Hpy188III	TCNNGA	6 cut(s)	128, 182, 218, 437, 830, 995
Hpy8I	GTNNAC	3 cut(s)	321, 604, 784
HpyAV	CCTTC	2 cut(s)	389, 1096
HpyCH4III	ACNGT	3 cut(s)	519, 596, 842
HpyCH4IV	ACGT	2 cut(s)	418, 818
HpyCH4V	TGCA	5 cut(s)	228, 267, 383, 524, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	3 cut(s)	33, 408, 570
HpySE526I	ACGT	2 cut(s)	418, 818
Hsp92II	CATG	7 cut(s)	19, 109, 170, 205, 740, 839, 1160
HspAI	GCGC	1 cut(s)	1010
Ksp22I	TGATCA	1 cut(s)	850
LmnI	GCTCC	3 cut(s)	91, 466, 742
Lsp1109I	GCAGC	2 cut(s)	316, 744
LweI	GCATC	1 cut(s)	960
MaeII	ACGT	2 cut(s)	418, 818
MaeIII	GTNAC	3 cut(s)	481, 773, 819
MboII	GAAGA	9 cut(s)	147, 170, 425, 467, 574, 688, 699, 941, 1056
MflI	RGATCY	2 cut(s)	152, 826
MhlI	GDGCHC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	106, 444
MroXI	GAANNNNTTC	1 cut(s)	1033
MseI	TTAA	9 cut(s)	27, 347, 543, 624, 755, 815, 902, 1023, 1040
MslI	CAYNNNNRTG	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	905
NlaIII	CATG	7 cut(s)	19, 109, 170, 205, 740, 839, 1160
NlaIV	GGNNCC	2 cut(s)	468, 744
NmuCI	GTSAC	2 cut(s)	481, 773
NspV	TTCGAA	1 cut(s)	292
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	1033
PfeI	GAWTC	4 cut(s)	511, 641, 679, 1034
PflFI	GACNNNGTC	1 cut(s)	779
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	331, 734
Ppu21I	YACGTR	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	468, 744
PspPI	GGNCC	1 cut(s)	795
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	152, 826
PsyI	GACNNNGTC	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	9 cut(s)	27, 347, 543, 624, 755, 815, 902, 1023, 1040
SatI	GCNGC	2 cut(s)	330, 733
Sau96I	GGNCC	1 cut(s)	795
ScaI	AGTACT	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	121
SmlI	CTYRAG	2 cut(s)	542, 857
SmoI	CTYRAG	2 cut(s)	542, 857
SsiI	CCGC	3 cut(s)	20, 1006, 1093
TaaI	ACNGT	3 cut(s)	519, 596, 842
TaiI	ACGT	2 cut(s)	421, 821
TaqI	TCGA	4 cut(s)	127, 292, 514, 879
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	511, 641, 679, 1034
Tru1I	TTAA	9 cut(s)	27, 347, 543, 624, 755, 815, 902, 1023, 1040
Tru9I	TTAA	9 cut(s)	27, 347, 543, 624, 755, 815, 902, 1023, 1040
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	2 cut(s)	481, 773
TseI	GCWGC	2 cut(s)	329, 732
Tsp45I	GTSAC	2 cut(s)	481, 773
TspDTI	ATGAA	4 cut(s)	224, 294, 419, 610
TspGWI	ACGGA	3 cut(s)	511, 642, 1041
TspRI	CASTG	1 cut(s)	778
Tth111I	GACNNNGTC	1 cut(s)	779
Van91I	CCANNNNNTGG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	542
XapI	RAATTY	4 cut(s)	284, 788, 949, 978
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	1033
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.