Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

33956871 .. 33961717

Gene Structure 4847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1273900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCAGAAGGTGTCATGGCGGTAGTCAAACCCGAGATGAAATCTTACATCTGGCTTCAAACTGCTGATGGCTCAATCCAACAAGTAGAAGAAGAGGTTGCCATGTTTTGTCCCATGATATGCCGAGAAATATTACAAACAGGAATGGGATCTTCCAAAAACTATGCTATATCACTTCCTCAACGAGTTAATCCAGCCATTTTGGGCTTAATACTCGACTACTGTCGGTTTCATCAAGTACCCGGTCGCTCTAATAAGGAGCGCAAAACTTTTGATGAGAAATTTATTCGAATGGATACAAAAAAGTTATGTGAGTTGACGTCCGCTGCTGACAGCCTCCAGTTGAAGCCTTTGGTTGATCTCACCAGCCGAGCGCTTGCTCGAATTATTGAAGGAAAATCACCCGAGGAGATACGCGAGACATTTCATTTACCTGATGACCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACTGATGATCCACGTATCCGGCTCCTTAACCGGTTATATGCTAGAAAGAGGAAAGAATTAAAAGAGAGAGAGAAACTGAAGAGTGTTGAGGCTGAGGGAGAGCGTATCGATGAGCGTTCAGTCGATGATCTTTTGACATTTATAAATGGTGGAAACAGAGAAACAAAAGGGATTAAGACCAATAAGAATAAAAAGAAAAATCGAAGAAGAAAAGATCATCCAAAAGATTCTTCAACCAATGTAAATGGACATAACAAGGATTTGGATGCGCTTTCTTCTGCTTCCCAAGATGGTGACACTATCAATGTTGAGTCTCCGTCTCCCAGTTCTTCAAAGTTGCAAGATTCTACGTCTGTTACCTTTTCACCAAAGCTTGACTTTGATGATGGTGATTTGGATGACGATTTAGATCCTGCCATGAAGGAAGAACTTGACAGGGAAGTGGAGGATTTTGCGCGAAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCCTTGGGCCAAGAGAGGAAACTTGCACCAATAGATATAAACGGCAATGGCTCTGCACGTAGATATAAAAGTTTGGACAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

356

Amino Acids

40.55

Weight (kDa)

5.71

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	116 - 153	2.5e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AatII	GACGTC	1 cut(s)	323
AccII	CGCG	2 cut(s)	417, 937
AciI	CCGC	2 cut(s)	20, 324
AclWI	GGATC	3 cut(s)	157, 482, 884
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	3 cut(s)	281, 946, 975
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	1 cut(s)	240
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	59, 346, 392, 714, 813
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	1 cut(s)	853
AluI	AGCT	1 cut(s)	853
Alw26I	GTCTC	3 cut(s)	413, 798, 804
AlwI	GGATC	3 cut(s)	157, 482, 884
Ama87I	CYCGRG	2 cut(s)	32, 404
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	2 cut(s)	956, 988
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	281, 946, 975
AsiGI	ACCGGT	1 cut(s)	510
AspLEI	GCGC	4 cut(s)	264, 376, 751, 937
AspS9I	GGNCC	1 cut(s)	988
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	5 cut(s)	355, 393, 785, 837, 881
AsuII	TTCGAA	1 cut(s)	289
AvaI	CYCGRG	2 cut(s)	32, 404
BalI	TGGCCA	1 cut(s)	958
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	62, 764, 860
BceAI	ACGGC	1 cut(s)	1039
BciVI	GTATCC	2 cut(s)	289, 506
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	3 cut(s)	413, 798, 804
BfaI	CTAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	2 cut(s)	289, 506
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	243
BmeT110I	CYCGRG	2 cut(s)	32, 404
BmgT120I	GGNCC	1 cut(s)	988
BmiI	GGNNCC	2 cut(s)	465, 503
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	2 cut(s)	736, 957
BmuI	ACTGGG	1 cut(s)	798
BoxI	GACNNNNGTC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	588
BsaAI	YACGTR	2 cut(s)	494, 1040
BsaBI	GATNNNNATC	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	405, 984
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	340, 804
Bse3DI	GCAATG	1 cut(s)	1033
Bse8I	GATNNNNATC	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	405, 984
BseGI	GGATG	4 cut(s)	697, 751, 883, 972
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	1033
BseMII	CTCAG	2 cut(s)	461, 564
BseNI	ACTGG	2 cut(s)	340, 804
BseRI	GAGGAG	3 cut(s)	422, 464, 467
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	1020
Bsh1236I	CGCG	2 cut(s)	417, 937
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	958, 990
BshTI	ACCGGT	1 cut(s)	510
BshVI	ATCGAT	1 cut(s)	588
BsiEI	CGRYCG	1 cut(s)	247
BsiHKCI	CYCGRG	2 cut(s)	32, 404
BsiSI	CCGG	3 cut(s)	243, 499, 511
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	413, 798, 804
BsmBI	CGTCTC	1 cut(s)	804
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	958, 990
BsoBI	CYCGRG	2 cut(s)	32, 404
Bsp119I	TTCGAA	1 cut(s)	289
Bsp143I	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
BspACI	CCGC	2 cut(s)	20, 324
BspANI	GGCC	2 cut(s)	958, 990
BspCNI	CTCAG	2 cut(s)	462, 565
BspDI	ATCGAT	1 cut(s)	588
BspFNI	CGCG	2 cut(s)	417, 937
BspLI	GGNNCC	2 cut(s)	465, 503
BspPI	GGATC	3 cut(s)	157, 482, 884
BspT104I	TTCGAA	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	1033
BsrFI	RCCGGY	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	340, 804
BssAI	RCCGGY	1 cut(s)	510
BssECI	CCNNGG	2 cut(s)	405, 984
BssMI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	984
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	87, 554
BstACI	GRCGYC	1 cut(s)	320
BstBAI	YACGTR	2 cut(s)	494, 1040
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	470, 573
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	697, 751, 883, 972
BstFNI	CGCG	2 cut(s)	417, 937
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	4 cut(s)	264, 376, 751, 937
BstKTI	GATC	6 cut(s)	152, 361, 490, 610, 697, 892
BstMAI	GTCTC	3 cut(s)	413, 798, 804
BstMBI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
BstMCI	CGRYCG	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	2 cut(s)	417, 937
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	149, 889
BstYI	RGATCY	2 cut(s)	149, 889
Bsu15I	ATCGAT	1 cut(s)	588
BsuI	GTATCC	2 cut(s)	289, 506
BsuRI	GGCC	2 cut(s)	958, 990
BsuTUI	ATCGAT	1 cut(s)	588
BtsCI	GGATG	4 cut(s)	697, 751, 883, 972
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	4 cut(s)	264, 376, 751, 937
Cfr10I	RCCGGY	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	988
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	510
CviAII	CATG	4 cut(s)	16, 103, 115, 898
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	470, 573
DpnI	GATC	6 cut(s)	151, 360, 489, 609, 696, 891
DpnII	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
EaeI	YGGCCR	1 cut(s)	956
Eam1104I	CTCTTC	2 cut(s)	87, 554
EarI	CTCTTC	2 cut(s)	87, 554
Eco130I	CCWWGG	1 cut(s)	984
Eco47III	AGCGCT	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	578
Eco88I	CYCGRG	2 cut(s)	32, 404
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	984
ErhI	CCWWGG	1 cut(s)	984
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	4 cut(s)	19, 106, 118, 901
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	15, 102, 114, 897
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	4 cut(s)	684, 758, 890, 979
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	4 cut(s)	263, 375, 750, 936
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	323
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	958, 990
HapII	CCGG	3 cut(s)	243, 499, 511
HhaI	GCGC	4 cut(s)	264, 376, 751, 937
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	19, 106, 118, 901
Hin6I	GCGC	4 cut(s)	262, 374, 749, 935
HinP1I	GCGC	4 cut(s)	262, 374, 749, 935
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	3 cut(s)	707, 791, 824
HpaII	CCGG	3 cut(s)	243, 499, 511
HphI	GGTGA	5 cut(s)	355, 393, 785, 837, 881
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	7, 471, 952
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	386, 895
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	4 cut(s)	320, 493, 830, 1039
HpyCH4V	TGCA	4 cut(s)	820, 970, 1007, 1037
HpyF3I	CTNAG	2 cut(s)	470, 573
HpySE526I	ACGT	4 cut(s)	320, 493, 830, 1039
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	19, 106, 118, 901
HspAI	GCGC	4 cut(s)	262, 374, 749, 935
Kzo9I	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
LmnI	GCTCC	2 cut(s)	259, 507
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	736, 957
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	4 cut(s)	320, 493, 830, 1039
MaeIII	GTNAC	2 cut(s)	773, 835
MalI	GATC	6 cut(s)	151, 360, 489, 609, 696, 891
MboI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
MflI	RGATCY	2 cut(s)	149, 889
MlsI	TGGCCA	1 cut(s)	958
MluCI	AATT	5 cut(s)	281, 384, 536, 946, 975
MluNI	TGGCCA	1 cut(s)	958
MlyI	GAGTC	1 cut(s)	800
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	958
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	6 cut(s)	189, 209, 507, 539, 654, 944
Msp20I	TGGCCA	1 cut(s)	958
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	243, 499, 511
MspR9I	CCNGG	1 cut(s)	243
MvnI	CGCG	2 cut(s)	417, 937
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
NlaIII	CATG	4 cut(s)	19, 106, 118, 901
NlaIV	GGNNCC	2 cut(s)	465, 503
NmeAIII	GCCGAG	2 cut(s)	149, 395
NmuCI	GTSAC	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	707, 824
PinAI	ACCGGT	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
Ppu21I	YACGTR	2 cut(s)	494, 1040
PshAI	GACNNNNGTC	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	623
PspN4I	GGNNCC	2 cut(s)	465, 503
PspPI	GGNCC	1 cut(s)	988
PsuI	RGATCY	2 cut(s)	149, 889
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	6 cut(s)	189, 209, 507, 539, 654, 944
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
Sau96I	GGNCC	1 cut(s)	988
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	736, 957
SfuI	TTCGAA	1 cut(s)	289
Sse9I	AATT	5 cut(s)	281, 384, 536, 946, 975
SsiI	CCGC	2 cut(s)	20, 324
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	984
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	4 cut(s)	323, 496, 833, 1042
TaqI	TCGA	6 cut(s)	216, 289, 382, 588, 603, 682
TasI	AATT	5 cut(s)	281, 384, 536, 946, 975
TfiI	GAWTC	2 cut(s)	707, 824
Tru1I	TTAA	6 cut(s)	189, 209, 507, 539, 654, 944
Tru9I	TTAA	6 cut(s)	189, 209, 507, 539, 654, 944
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	4 cut(s)	53, 221, 416, 914
TspGWI	ACGGA	1 cut(s)	786
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	3 cut(s)	281, 946, 975
XspI	CTAG	1 cut(s)	522
ZraI	GACGTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.