Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

16616939 .. 16620669

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1062100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGGATTTAGGGAGCGAACACGTGTATTGCCCTATGATATGCAAAGAAAATATACAGAAAGGGATGGGAGCTTCCAAGAACCATGCAATATCTCTTCCTGAAAGAGTCGGTACTGCAATGTTGAGCTTAATTCTTGATTACTGCCGATTTCATCAAGTACCAGGTCGCTCGAACAAGGTTCTACATGAATGCAAGGCTTTTGATGAAAAATACATCCGAATGGACGCAAAGTTGCTCTGTGAGTTGACTTCAGCAGCTGACAGCCTCCAATTAAAACCATTGGTGGATCTTACTAGTCGTGCTCTTGCACGAATAATTGAAGGGAAAACACCTGAGGAGATACGTGAAATATTTCATCTCCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTTTGAAAAATTCAACTGACGATCCACGCATTCGACTTTTGAATCGATTATATGCAAGAAAGAGGAGGGAACTTCAGGAAAGAGAGAAATTGAAGGTGAGTTTGGTATTTGATGAATCTAAATTCAAAACAATGACGAGCTCGAAGAAGAGCAAAACGATGAACGTTCAGTTGATGATCTCTTGTCATCTCGAAGAAGAGCAAAACGATGAACGTTCAGTTGATGATCTCTTGTCATTCATTAATGGAGAAATTGGAGATTCCAAAGGAATTAAAACTTCCAAGAACAAAAAGAAGAATCGCAGGAGAAAAGATCAGCAGAAAAGCACGTGTCTATATGAGGCCAATGAGATCCATGAGGTGTCGAGCAATCTTAACTTTGCTTGCCCCAGTGATGAACTCAACAAATTTACGCCTAGTTCTAGTTTGACATTAAAGCTACAAGATCTAAAGGATGATAGGGTGGAGGATATGATTGGGTTTGATGAAGGTGATATTGATGATGAGATTGATCCGGCATTGAAGGAAAAAATTGATAGGGAGGTTGAAGATTTTGCTCGGAGGTTAAATTCAGACTGGCCTGAAAGGATGCAAGAGATCCTATCTTTGGGTCAGGAAAGGAGGCCTGTAACATTTTCCATTAATGGAAACAGTTCTTTCAGAAGATATGCTTTGGAAACGGCTCGAACAAAACTCTCATCAGCCACAGGCTGGAACAATTTTGACCAGATGCTAACAGGCTACCAAGAGTTCCAATTCTCATTTATTTGGACCCAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

393

Amino Acids

45.26

Weight (kDa)

5.72

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	93 - 131	1.1e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1107
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	2 cut(s)	561, 610
AclWI	GGATC	5 cut(s)	297, 413, 742, 902, 988
AcsI	RAATTY	4 cut(s)	406, 518, 803, 964
AcuI	CTGAAG	2 cut(s)	237, 455
AcvI	CACGTG	2 cut(s)	25, 726
AfaI	GTAC	2 cut(s)	115, 162
AfiI	CCNNNNNNNGG	2 cut(s)	1003, 1107
AflIII	ACRYGT	3 cut(s)	22, 24, 725
AgsI	TTSAA	8 cut(s)	323, 403, 411, 439, 490, 523, 919, 944
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	5 cut(s)	74, 129, 260, 537, 835
AluI	AGCT	5 cut(s)	74, 129, 260, 537, 835
Alw21I	GWGCWC	2 cut(s)	307, 539
AlwI	GGATC	5 cut(s)	297, 413, 742, 902, 988
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	738, 974, 1019
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	4 cut(s)	406, 518, 803, 964
AseI	ATTAAT	2 cut(s)	639, 1038
Asp700I	GAANNNNTTC	2 cut(s)	354, 1048
AspS9I	GGNCC	1 cut(s)	1167
AsuHPI	GGTGA	2 cut(s)	505, 899
AvaII	GGWCC	1 cut(s)	1167
AxyI	CCTNAGG	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	539
BbrPI	CACGTG	2 cut(s)	25, 726
Bbv12I	GWGCWC	2 cut(s)	307, 539
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	1092
BciT130I	CCWGG	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	3 cut(s)	297, 813, 819
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	1167
BmgT120I	GGNCC	1 cut(s)	1167
BmiI	GGNNCC	2 cut(s)	396, 1169
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	975, 1116
BmuI	ACTGGG	1 cut(s)	780
Bsa29I	ATCGAT	1 cut(s)	442
BsaAI	YACGTR	3 cut(s)	25, 347, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	1003, 1107
Bse1I	ACTGG	2 cut(s)	786, 977
Bse21I	CCTNAGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	442
BseGI	GGATG	4 cut(s)	72, 216, 856, 990
BseLI	CCNNNNNNNGG	2 cut(s)	1003, 1107
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	786, 977
BseRI	GAGGAG	2 cut(s)	353, 475
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	3 cut(s)	740, 976, 1021
BshVI	ATCGAT	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	307, 539
BsiSI	CCGG	1 cut(s)	911
BslI	CCNNNNNNNGG	2 cut(s)	1003, 1107
BsmI	GAATGC	2 cut(s)	197, 426
BsnI	GGCC	3 cut(s)	740, 976, 1021
Bsp1286I	GDGCHC	2 cut(s)	307, 539
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	740, 976, 1021
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	396, 1169
BspPI	GGATC	5 cut(s)	297, 413, 742, 902, 988
BspQI	GCTCTTC	2 cut(s)	539, 588
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	786, 977
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	1049
Bst6I	CTCTTC	4 cut(s)	102, 378, 539, 588
BstBAI	YACGTR	3 cut(s)	25, 347, 726
BstC8I	GCNNGC	1 cut(s)	781
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	4 cut(s)	72, 216, 856, 990
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	269
BstX2I	RGATCY	4 cut(s)	289, 747, 841, 993
BstYI	RGATCY	4 cut(s)	289, 747, 841, 993
Bsu15I	ATCGAT	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	740, 976, 1021
BsuTUI	ATCGAT	1 cut(s)	442
BtsCI	GGATG	4 cut(s)	72, 216, 856, 990
BtsIMutI	CAGTG	1 cut(s)	793
Cac8I	GCNNGC	1 cut(s)	781
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	1167
ClaI	ATCGAT	1 cut(s)	442
CseI	GACGC	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	114, 161
CviAII	CATG	3 cut(s)	86, 188, 752
CviQI	GTAC	2 cut(s)	114, 161
DdeI	CTNAG	1 cut(s)	336
Eam1104I	CTCTTC	4 cut(s)	102, 378, 539, 588
EarI	CTCTTC	4 cut(s)	102, 378, 539, 588
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	1021
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	1167
Eco53kI	GAGCTC	1 cut(s)	537
Eco57I	CTGAAG	2 cut(s)	237, 455
Eco72I	CACGTG	2 cut(s)	25, 726
Eco81I	CCTNAGG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	539
FaeI	CATG	3 cut(s)	89, 191, 755
FalI	AAGNNNNNCTT	2 cut(s)	1051, 1083
FatI	CATG	3 cut(s)	85, 187, 751
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	4 cut(s)	79, 203, 863, 997
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	3 cut(s)	297, 813, 819
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	740, 976, 1021
HapII	CCGG	1 cut(s)	911
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	89, 191, 755
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	5 cut(s)	108, 439, 512, 656, 694
HpaII	CCGG	1 cut(s)	911
HphI	GGTGA	2 cut(s)	505, 899
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	4 cut(s)	221, 957, 970, 1058
Hpy188III	TCNNGA	5 cut(s)	101, 137, 473, 587, 1010
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	4 cut(s)	317, 484, 878, 913
HpyCH4III	ACNGT	1 cut(s)	1049
HpyCH4IV	ACGT	5 cut(s)	24, 346, 561, 610, 725
HpyCH4V	TGCA	7 cut(s)	45, 89, 119, 195, 311, 452, 988
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	5 cut(s)	24, 346, 561, 610, 725
Hsp92II	CATG	3 cut(s)	89, 191, 755
LguI	GCTCTTC	2 cut(s)	539, 588
LmnI	GCTCC	3 cut(s)	15, 71, 394
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	975, 1116
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	3 cut(s)	297, 813, 819
MaeII	ACGT	5 cut(s)	24, 346, 561, 610, 725
MaeIII	GTNAC	1 cut(s)	1024
MboII	GAAGA	9 cut(s)	89, 395, 553, 556, 602, 605, 703, 956, 1071
MflI	RGATCY	4 cut(s)	289, 747, 841, 993
MhlI	GDGCHC	2 cut(s)	307, 539
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	372
MroXI	GAANNNNTTC	2 cut(s)	354, 1048
MseI	TTAA	8 cut(s)	131, 275, 639, 669, 771, 830, 962, 1038
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	911
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	2 cut(s)	197, 426
MvaI	CCWGG	1 cut(s)	165
NlaIII	CATG	3 cut(s)	89, 191, 755
NlaIV	GGNNCC	2 cut(s)	396, 1169
PceI	AGGCCT	1 cut(s)	1021
PciSI	GCTCTTC	2 cut(s)	539, 588
PctI	GAATGC	2 cut(s)	197, 426
PdmI	GAANNNNTTC	2 cut(s)	354, 1048
PfeI	GAWTC	4 cut(s)	439, 512, 656, 694
PflMI	CCANNNNNTGG	1 cut(s)	1107
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	2 cut(s)	25, 726
PmlI	CACGTG	2 cut(s)	25, 726
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	3 cut(s)	25, 347, 726
PshBI	ATTAAT	2 cut(s)	639, 1038
Psp124BI	GAGCTC	1 cut(s)	539
Psp1406I	AACGTT	2 cut(s)	561, 610
Psp6I	CCWGG	1 cut(s)	163
PspCI	CACGTG	2 cut(s)	25, 726
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	396, 1169
PspPI	GGNCC	1 cut(s)	1167
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	4 cut(s)	289, 747, 841, 993
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	115, 162
RsaNI	GTAC	2 cut(s)	114, 161
RseI	CAYNNNNRTG	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	539
SapI	GCTCTTC	2 cut(s)	539, 588
SaqAI	TTAA	8 cut(s)	131, 275, 639, 669, 771, 830, 962, 1038
SatI	GCNGC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	1167
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	307, 539
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	975, 1116
SinI	GGWCC	1 cut(s)	1167
SmiMI	CAYNNNNRTG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	296
SseBI	AGGCCT	1 cut(s)	1021
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	3 cut(s)	297, 813, 819
SstI	GAGCTC	1 cut(s)	539
StuI	AGGCCT	1 cut(s)	1021
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	1049
TaiI	ACGT	5 cut(s)	27, 349, 564, 613, 728
TaqI	TCGA	7 cut(s)	173, 430, 442, 539, 588, 761, 1081
TfiI	GAWTC	4 cut(s)	439, 512, 656, 694
Tru1I	TTAA	8 cut(s)	131, 275, 639, 669, 771, 830, 962, 1038
Tru9I	TTAA	8 cut(s)	131, 275, 639, 669, 771, 830, 962, 1038
TscAI	CASTG	1 cut(s)	793
TseI	GCWGC	1 cut(s)	257
TspRI	CASTG	1 cut(s)	793
Van91I	CCANNNNNTGG	1 cut(s)	1107
VpaK11BI	GGWCC	1 cut(s)	1167
VspI	ATTAAT	2 cut(s)	639, 1038
XapI	RAATTY	4 cut(s)	406, 518, 803, 964
XmnI	GAANNNNTTC	2 cut(s)	354, 1048
XspI	CTAG	3 cut(s)	297, 813, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.