Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

18904324 .. 18908121

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTGGCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATTTGTCAAGAGGTAATACAGAAGGGTGTTGGATCCTCTAAAAATCATGCAATATCGCTTCCACAACGAGTTAATCCAGCTATGTTCAGCTTGATTCTTGATTACTGCAGATTTCATCAACTGCCAGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCCGAATGGACACAAAGAGGCTCTGTGAGTTGACCTCTGCCGCTGACAGTTTGCAGCTGAAACCTTTGGTTGATCTTACTAGTCGCGCACTTGCAAGAATCATTGAAGGAAAAAACCCTGAGGAGATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACTCAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCAAAGAAAAGAAAGGAACTGAAAGAAAGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTGGACGAACGTTCTGTGGATGACCTGTTATCATTTATTAACGGCAGAGATCACAAGGCTGTAAAGATGTCAAAGGGAAAAAAGAAGAAAAAGAAAAAGAAGGATCAGAAGATTGTTTCTTCAAATAACATTCATGACAAGGAATCACATGATCTCCGTTCCAAACAACAATGTGTTGAAGAGATTGGGTCCAGCATGAGAGAGGTACCCAACTTACTTAGTGCAGAAGATGACATTTCTACGCCAAATGCCGGGTCTGAAGATGAAGATATAGACGATGAAATCGATCCAGCCATGAGGGAACTGCTTGATAGAGAGGTTGAAGATTTTGCTCAAAGACTGAACTCCAATTGGGTTCGGTCGCTAGGAAAAGAAAGAAGGCCTGTACACTTCTCCATAAATGGCAACGGGACTACAAGACGGCATACAGGTCAATCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

342

Amino Acids

39.43

Weight (kDa)

6.36

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	117 - 155	5.1e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	790
AccB1I	GGYRCC	1 cut(s)	790
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	1 cut(s)	375
AciI	CCGC	1 cut(s)	330
AclI	AACGTT	1 cut(s)	595
AclWI	GGATC	5 cut(s)	147, 160, 485, 696, 866
AcoI	YGGCCR	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	494, 864
AcvI	CACGTG	1 cut(s)	586
AfaI	GTAC	2 cut(s)	792, 972
AfiI	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 836
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	9 cut(s)	62, 78, 255, 395, 562, 578, 708, 764, 908
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	200, 210, 346
AluI	AGCT	3 cut(s)	200, 210, 346
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	5 cut(s)	147, 160, 485, 696, 866
AoxI	GGCC	2 cut(s)	18, 965
ApeKI	GCWGC	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	824, 856
Asp700I	GAANNNNTTC	1 cut(s)	426
Asp718I	GGTACC	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	774
AxyI	CCTNAGG	1 cut(s)	408
BamHI	GGATCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	790
BbrPI	CACGTG	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	3 cut(s)	5, 643, 1022
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	29
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	369, 950
BfmI	CTRYAG	1 cut(s)	226
BisI	GCNGC	2 cut(s)	330, 344
BlsI	GCNGC	2 cut(s)	331, 345
Bme1390I	CCNGG	2 cut(s)	246, 838
Bme18I	GGWCC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	3 cut(s)	154, 775, 792
BmrFI	CCNGG	2 cut(s)	246, 838
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuMI	CCSGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	870
BsaAI	YACGTR	1 cut(s)	586
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 836
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	3 cut(s)	288, 493, 610
BseLI	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 836
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	399, 441
BseRI	GAGGAG	3 cut(s)	425, 467, 470
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	947
BshFI	GGCC	2 cut(s)	20, 967
BshNI	GGYRCC	1 cut(s)	790
BshVI	ATCGAT	1 cut(s)	870
BsiEI	CGRYCG	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	837
BslFI	GGGAC	2 cut(s)	99, 1009
BslI	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 836
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	99, 1009
BsnI	GGCC	2 cut(s)	20, 967
Bso31I	GGTCTC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	970
Bsp143I	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	2 cut(s)	20, 967
BspCNI	CTCAG	2 cut(s)	400, 442
BspDI	ATCGAT	1 cut(s)	870
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	2 cut(s)	24, 718
BspLI	GGNNCC	3 cut(s)	154, 775, 792
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	5 cut(s)	147, 160, 485, 696, 866
BspT107I	GGYRCC	1 cut(s)	790
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	970
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	759
BstAUI	TGTACA	1 cut(s)	970
BstBAI	YACGTR	1 cut(s)	586
BstDEI	CTNAG	3 cut(s)	408, 450, 803
BstDSI	CCRYGG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	288, 493, 610
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	7 cut(s)	155, 364, 493, 637, 691, 739, 874
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
BstMCI	CGRYCG	1 cut(s)	947
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	244, 836
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	870
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	20, 967
BsuTUI	ATCGAT	1 cut(s)	870
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	288, 493, 610
CciI	TCATGA	2 cut(s)	24, 718
CfoI	GCGC	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	774
ClaI	ATCGAT	1 cut(s)	870
Csp6I	GTAC	2 cut(s)	791, 971
CviAII	CATG	9 cut(s)	25, 40, 118, 167, 719, 734, 781, 880, 1026
CviQI	GTAC	2 cut(s)	791, 971
DdeI	CTNAG	3 cut(s)	408, 450, 803
DpnI	GATC	7 cut(s)	154, 363, 492, 636, 690, 738, 873
DpnII	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco147I	AGGCCT	1 cut(s)	967
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	494, 864
Eco72I	CACGTG	1 cut(s)	586
Eco81I	CCTNAGG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	9 cut(s)	28, 43, 121, 170, 722, 737, 784, 883, 1029
FaqI	GGGAC	2 cut(s)	99, 1009
FatI	CATG	9 cut(s)	24, 39, 117, 166, 718, 733, 780, 879, 1025
Fnu4HI	GCNGC	2 cut(s)	330, 344
FokI	GGATG	3 cut(s)	275, 500, 617
Fsp4HI	GCNGC	2 cut(s)	330, 344
FspBI	CTAG	2 cut(s)	369, 950
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	2 cut(s)	330, 344
HaeIII	GGCC	2 cut(s)	20, 967
HapII	CCGG	1 cut(s)	837
HhaI	GCGC	1 cut(s)	377
Hin1II	CATG	9 cut(s)	28, 43, 121, 170, 722, 737, 784, 883, 1029
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	5 cut(s)	214, 285, 387, 499, 728
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	321, 589, 973
Hpy188I	TCNGA	5 cut(s)	7, 293, 474, 693, 844
Hpy188III	TCNNGA	4 cut(s)	25, 128, 218, 719
Hpy8I	GTNNAC	3 cut(s)	321, 589, 973
HpyAV	CCTTC	4 cut(s)	136, 389, 679, 957
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	3 cut(s)	250, 585, 595
HpyCH4V	TGCA	7 cut(s)	104, 170, 228, 343, 383, 524, 809
HpyF3I	CTNAG	3 cut(s)	408, 450, 803
HpySE526I	ACGT	3 cut(s)	250, 585, 595
Hsp92II	CATG	9 cut(s)	28, 43, 121, 170, 722, 737, 784, 883, 1029
HspAI	GCGC	1 cut(s)	375
KpnI	GGTACC	1 cut(s)	794
Kzo9I	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	369, 950
MaeII	ACGT	3 cut(s)	250, 585, 595
MalI	GATC	7 cut(s)	154, 363, 492, 636, 690, 738, 873
MboI	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
MfeI	CAATTG	1 cut(s)	934
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	2 cut(s)	461, 934
MmeI	TCCRAC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	192, 624
MslI	CAYNNNNRTG	1 cut(s)	293
MspA1I	CMGCKG	2 cut(s)	332, 346
MspI	CCGG	1 cut(s)	837
MspR9I	CCNGG	2 cut(s)	246, 838
MunI	CAATTG	1 cut(s)	934
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	375
NciI	CCSGG	1 cut(s)	838
NdeII	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
NlaIII	CATG	9 cut(s)	28, 43, 121, 170, 722, 737, 784, 883, 1029
NlaIV	GGNNCC	3 cut(s)	154, 775, 792
PagI	TCATGA	2 cut(s)	24, 718
PceI	AGGCCT	1 cut(s)	967
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	5 cut(s)	214, 285, 387, 499, 728
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	331, 345
PmaCI	CACGTG	1 cut(s)	586
PmlI	CACGTG	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	586
Psp1406I	AACGTT	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	244
PspCI	CACGTG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	154, 775, 792
PspPI	GGNCC	1 cut(s)	774
PstI	CTGCAG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	792, 972
RsaNI	GTAC	2 cut(s)	791, 971
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	192, 624
SatI	GCNGC	2 cut(s)	330, 344
Sau3AI	GATC	7 cut(s)	152, 361, 490, 634, 688, 736, 871
Sau96I	GGNCC	1 cut(s)	774
ScrFI	CCNGG	2 cut(s)	246, 838
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	2 cut(s)	461, 934
SseBI	AGGCCT	1 cut(s)	967
SsiI	CCGC	1 cut(s)	330
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	2 cut(s)	369, 950
StuI	AGGCCT	1 cut(s)	967
StyD4I	CCNGG	2 cut(s)	244, 836
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	3 cut(s)	253, 588, 598
TaqI	TCGA	2 cut(s)	502, 870
TaqII	GACCGA	1 cut(s)	933
TasI	AATT	2 cut(s)	461, 934
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	5 cut(s)	214, 285, 387, 499, 728
Tru1I	TTAA	2 cut(s)	192, 624
Tru9I	TTAA	2 cut(s)	192, 624
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	9 cut(s)	41, 56, 224, 277, 294, 419, 707, 864, 879
TspGWI	ACGGA	2 cut(s)	511, 731
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	774
XagI	CCTNNNNNAGG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	369, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.