Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

21820726 .. 21826349

Gene Structure 5624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G171100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTTAAGACTTAAAAGTTATTCTGAAGTCACACTGGTGCCAACCGATTCTCAGATGATGAAGTCTTATATCTGGCTTCAGACTGCTGATGGTTCAATCCAACAAGTGGAACAAGAGGTTGCCATGTTTTGCCCCATGATATGTCAAGAGAATATACAAAAAGGGATGGGATCTTCCAAGAACCATGCAATATCTCTTCCAGAAAGAGTCAATACTGCCATGTTGAGCCTAATTATTGATTACTGCAGGTTTCATCAAGTACCAGGTCGCTCGAACAAGGAATGCAAGGCTTTTGATGAAAAATACATCCGAATGGACACAAAAAAGCTCTGTGAGCTGACTTCAGCTGCTGACAGCCTCCAATTAAAGCCGTTGGTTGATCTTACCAGTCGTGCTCTTGCACGAATAATTGAAGGGAAAACACCTGAGGAGATACGTGAGATATTTCATCTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTTTGAAAAATTCAACTGACGATCCACGTATCCGGCTTTTGAATCGACTATATGCACGAAAGAGGAGAGAACTTCAGGAAAGAGAGAAATTGAAGAATGCTGAGCTTGAAGAAGAGCGAAGCGATGACCGTTCAGTTGATGATCTCTTGTCCTTCATTAATGGAGAAATTGGAGATTCCAAGGGGATTAAAACTTCCAAGAACAAAAAGAAGAATCGCAGAAGAAAAGATCAACAAAAAAACACTTGTCTATATGAAGCTAATGAAATCCATGAGGAGTCGAGCAATCTTAAGTTTGCTTGCCCCGGCGATGAAGTCAACAAATTTAGAGCCAGTCCTAGTTTGACTTTAAAGCTACAAGATCTAAACGATGACGGCCTGGAGGATATGGTTGAGTTTGATGATGGTGATATTGATGATGAGATTGACCCTGCGTTAAAGGAAAAAATTGATAGGGAGGTTGAAGATTTTGCTAGGAGATTGAATTCAGACTGGCCTCAAAGGATACAAGAGATTCTTGCTTTGGGTCAGGAAAGGAGGCGGGTACCAGTTTCCATTAACGGAAGGGATTCTATGAGAAGATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

359

Amino Acids

41.49

Weight (kDa)

5.34

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	1030
AccB1I	GGYRCC	2 cut(s)	37, 1030
AccB7I	CCANNNNNTGG	1 cut(s)	106
AciI	CCGC	1 cut(s)	1027
AclWI	GGATC	2 cut(s)	178, 503
AcsI	RAATTY	3 cut(s)	496, 809, 970
AcuI	CTGAAG	4 cut(s)	45, 62, 327, 545
AfaI	GTAC	2 cut(s)	261, 1032
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	9 cut(s)	96, 413, 493, 501, 529, 580, 596, 950, 970
AjnI	CCWGG	2 cut(s)	262, 864
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	6 cut(s)	328, 337, 347, 592, 746, 841
AluI	AGCT	6 cut(s)	328, 337, 347, 592, 746, 841
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	178, 503
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	862, 980
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	3 cut(s)	496, 809, 970
AseI	ATTAAT	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	1054
Asp718I	GGTACC	1 cut(s)	1030
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	905
AxyI	CCTNAGG	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	37, 1030
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	3 cut(s)	83, 160, 884
BceAI	ACGGC	2 cut(s)	355, 877
BciT130I	CCWGG	2 cut(s)	264, 866
BciVI	GTATCC	2 cut(s)	527, 984
BcnI	CCSGG	1 cut(s)	792
BfaI	CTAG	2 cut(s)	825, 960
BfmI	CTRYAG	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	776
BfuAI	ACCTGC	1 cut(s)	237
BfuI	GTATCC	2 cut(s)	527, 984
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	1 cut(s)	348
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	3 cut(s)	264, 792, 866
BmiI	GGNNCC	3 cut(s)	39, 486, 1032
BmrFI	CCNGG	3 cut(s)	264, 792, 866
BpmI	CTGGAG	1 cut(s)	887
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuMI	CCSGG	1 cut(s)	792
BsaAI	YACGTR	2 cut(s)	437, 515
BsaJI	CCNNGG	2 cut(s)	666, 790
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	5 cut(s)	39, 387, 819, 983, 1034
Bse21I	CCTNAGG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	264, 866
BseDI	CCNNGG	2 cut(s)	666, 790
BseGI	GGATG	2 cut(s)	171, 306
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	65, 417, 579
BseNI	ACTGG	5 cut(s)	39, 387, 819, 983, 1034
BseRI	GAGGAG	3 cut(s)	443, 565, 776
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	2 cut(s)	864, 982
BshNI	GGYRCC	2 cut(s)	37, 1030
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	520, 792
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmI	GAATGC	2 cut(s)	287, 589
BsnI	GGCC	2 cut(s)	864, 982
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	1 cut(s)	1027
BspANI	GGCC	2 cut(s)	864, 982
BspCNI	CTCAG	3 cut(s)	64, 418, 580
BspLI	GGNNCC	3 cut(s)	39, 486, 1032
BspMAI	CTGCAG	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	178, 503
BspQI	GCTCTTC	1 cut(s)	594
BspT107I	GGYRCC	2 cut(s)	37, 1030
BspTI	CTTAAG	1 cut(s)	776
BsrI	ACTGG	5 cut(s)	39, 387, 819, 983, 1034
BssECI	CCNNGG	2 cut(s)	666, 790
BssMI	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
BssT1I	CCWWGG	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	264, 866
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	3 cut(s)	201, 468, 594
BstAFI	CTTAAG	1 cut(s)	776
BstBAI	YACGTR	2 cut(s)	437, 515
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	3 cut(s)	51, 426, 588
BstF5I	GGATG	2 cut(s)	171, 306
BstKTI	GATC	7 cut(s)	173, 382, 463, 511, 631, 718, 850
BstMBI	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	264, 866
BstSCI	CCNGG	3 cut(s)	262, 790, 864
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	170, 847
BstYI	RGATCY	2 cut(s)	170, 847
Bsu36I	CCTNAGG	1 cut(s)	426
BsuI	GTATCC	2 cut(s)	527, 984
BsuRI	GGCC	2 cut(s)	864, 982
BtgZI	GCGATG	2 cut(s)	624, 810
BtsCI	GGATG	2 cut(s)	171, 306
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	787
CaiI	CAGNNNCTG	1 cut(s)	350
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	260, 1031
CviAII	CATG	5 cut(s)	124, 136, 185, 220, 758
CviQI	GTAC	2 cut(s)	260, 1031
DdeI	CTNAG	3 cut(s)	51, 426, 588
DpnI	GATC	7 cut(s)	172, 381, 462, 510, 630, 717, 849
DpnII	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
DraI	TTTAAA	1 cut(s)	837
Eam1104I	CTCTTC	3 cut(s)	201, 468, 594
EarI	CTCTTC	3 cut(s)	201, 468, 594
Eco130I	CCWWGG	1 cut(s)	666
Eco57I	CTGAAG	4 cut(s)	45, 62, 327, 545
Eco81I	CCTNAGG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	970
EcoRII	CCWGG	2 cut(s)	262, 864
EcoT14I	CCWWGG	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	5 cut(s)	127, 139, 188, 223, 761
FalI	AAGNNNNNCTT	3 cut(s)	987, 1019, 1057
FatI	CATG	5 cut(s)	123, 135, 184, 219, 757
FauI	CCCGC	1 cut(s)	1020
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	178, 293
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	825, 960
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	887
HaeIII	GGCC	2 cut(s)	864, 982
HapII	CCGG	2 cut(s)	520, 792
Hin1II	CATG	5 cut(s)	127, 139, 188, 223, 761
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HinfI	GANTC	8 cut(s)	47, 207, 529, 662, 700, 764, 1000, 1055
HpaII	CCGG	2 cut(s)	520, 792
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	5 cut(s)	25, 54, 81, 311, 976
Hpy188III	TCNNGA	4 cut(s)	146, 200, 563, 1016
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	3 cut(s)	407, 649, 1044
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	2 cut(s)	436, 514
HpyCH4V	TGCA	5 cut(s)	188, 246, 285, 401, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	3 cut(s)	51, 426, 588
HpySE526I	ACGT	2 cut(s)	436, 514
Hsp92II	CATG	5 cut(s)	127, 139, 188, 223, 761
KpnI	GGTACC	1 cut(s)	1034
Kzo9I	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	1 cut(s)	334
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	2 cut(s)	825, 960
MaeII	ACGT	2 cut(s)	436, 514
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	7 cut(s)	172, 381, 462, 510, 630, 717, 849
MboI	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
MflI	RGATCY	2 cut(s)	170, 847
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	9 cut(s)	231, 362, 408, 496, 575, 654, 809, 933, 970
MlyI	GAGTC	2 cut(s)	216, 773
MmeI	TCCRAC	2 cut(s)	124, 462
MroXI	GAANNNNTTC	1 cut(s)	1054
MseI	TTAA	9 cut(s)	5, 12, 365, 645, 675, 777, 836, 923, 1044
MslI	CAYNNNNRTG	2 cut(s)	35, 311
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	2 cut(s)	520, 792
MspR9I	CCNGG	3 cut(s)	264, 792, 866
Mva1269I	GAATGC	2 cut(s)	287, 589
MvaI	CCWGG	2 cut(s)	264, 866
MwoI	GCNNNNNNNGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	792
NdeII	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
NlaIII	CATG	5 cut(s)	127, 139, 188, 223, 761
NlaIV	GGNNCC	3 cut(s)	39, 486, 1032
NmuCI	GTSAC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	594
PctI	GAATGC	2 cut(s)	287, 589
PdmI	GAANNNNTTC	1 cut(s)	1054
PfeI	GAWTC	6 cut(s)	47, 529, 662, 700, 1000, 1055
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	215, 772
PpsI	GAGTC	2 cut(s)	215, 772
Ppu21I	YACGTR	2 cut(s)	437, 515
PshBI	ATTAAT	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	262, 864
PspGI	CCWGG	2 cut(s)	262, 864
PspN4I	GGNNCC	3 cut(s)	39, 486, 1032
PstI	CTGCAG	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	170, 847
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	261, 1032
RsaNI	GTAC	2 cut(s)	260, 1031
RseI	CAYNNNNRTG	2 cut(s)	35, 311
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	9 cut(s)	5, 12, 365, 645, 675, 777, 836, 923, 1044
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	7 cut(s)	170, 379, 460, 508, 628, 715, 847
SchI	GAGTC	2 cut(s)	216, 773
ScrFI	CCNGG	3 cut(s)	264, 792, 866
SduI	GDGCHC	1 cut(s)	397
SexAI	ACCWGGT	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	35, 311
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	9 cut(s)	231, 362, 408, 496, 575, 654, 809, 933, 970
SsiI	CCGC	1 cut(s)	1027
SspMI	CTAG	2 cut(s)	825, 960
StyD4I	CCNGG	3 cut(s)	262, 790, 864
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	2 cut(s)	439, 517
TaqI	TCGA	3 cut(s)	272, 532, 767
TasI	AATT	9 cut(s)	231, 362, 408, 496, 575, 654, 809, 933, 970
TfiI	GAWTC	6 cut(s)	47, 529, 662, 700, 1000, 1055
Tru1I	TTAA	9 cut(s)	5, 12, 365, 645, 675, 777, 836, 923, 1044
Tru9I	TTAA	9 cut(s)	5, 12, 365, 645, 675, 777, 836, 923, 1044
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	8 cut(s)	74, 242, 312, 437, 631, 756, 765, 813
TspGWI	ACGGA	1 cut(s)	1062
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	776
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	3 cut(s)	496, 809, 970
XmnI	GAANNNNTTC	1 cut(s)	1054
XspI	CTAG	2 cut(s)	825, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.