Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

64867591 .. 64873619

Gene Structure 6029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATACAAAGAAGTTATGCGAGTTGACATCAGCTGCTGACAGCCTACAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCACGAATTATTGAAGGAAAAACTCCTGAAGAGATACGGGAGACGTTTCATTTACCTGATGATCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACCGATGATCCACGTATCCGGCTTCTTAATCGTCTATATGCAAGAAAGAGGAAAGAATTGAAAGAGAGAGAGAAACTGAAGAATGTTGAGGTGGAGGAGGAGCGTGTTGATCAGCGTTCCGTCGATGATCTCTTGACATTTATAAATGGTGGAAATGGAGATTCAAAGGGAGTTAAAACCAATAAGAATAAGAAGAAAAATCGAAGAAGAAAAGATCCGCCAAAAGATTCTTCAAATAATGTCAATGGAAACCATAATAAGGAATCAGAAGCTCTTTCTTCTGCTTTCCACAATGAATCCCGACCTTCTAGCTCTTGCAACTTGCAAGATTGTACAGCCATTGAGTTTGATGATGGTGATGTTGATGATGATTTAGATCCTGCCATGAAGGAGCAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCCTTGGGCCAAGAAAGGAGACTTTCACCAATAAATATTAATGGAAATGGTTCTGCACGTAGATATACAAGTATGTTCCCTCGTCCCCTCCTGTTTTCCCACTGTACGTTACTTCCTCTGTTGCATATTTTTCATTTTCTTTTCAAAGCTTCTGGAAGAATATTTGCATTCCTTGTGTTCGAGGATATTATTGGGGACTTCTTGAGGCATTTCATATCTTCTTTCTTGGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

297

Amino Acids

34.27

Weight (kDa)

5.9

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	19 - 56	1.2e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	3 cut(s)	191, 398, 560
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	622, 651
AcuI	CTGAAG	2 cut(s)	135, 287
AfaI	GTAC	2 cut(s)	523, 763
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	6 cut(s)	55, 101, 250, 354, 423, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	5 cut(s)	35, 461, 501, 586, 806
AluI	AGCT	5 cut(s)	35, 461, 501, 586, 806
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	122, 670
AlwI	GGATC	3 cut(s)	191, 398, 560
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	632, 664
ApeKI	GCWGC	2 cut(s)	35, 583
ApoI	RAATTY	2 cut(s)	622, 651
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	1 cut(s)	706
AspS9I	GGNCC	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	64, 557, 675
BalI	TGGCCA	1 cut(s)	634
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	22, 595
BccI	CCATC	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	122, 670
BfaI	CTAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	36, 584
BlsI	GCNGC	2 cut(s)	37, 585
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	880
BsaAI	YACGTR	2 cut(s)	203, 716
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	1 cut(s)	648
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	4 cut(s)	173, 176, 299, 302
BseXI	GCAGC	2 cut(s)	22, 595
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	634, 666
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	2 cut(s)	726, 866
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	122, 670
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	2 cut(s)	726, 866
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	634, 666
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	2 cut(s)	634, 666
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	3 cut(s)	191, 398, 560
BsrGI	TGTACA	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	761
Bst6I	CTCTTC	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	521
BstBAI	YACGTR	2 cut(s)	203, 716
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	648
BstKTI	GATC	7 cut(s)	70, 151, 199, 301, 319, 406, 568
BstMAI	GTCTC	2 cut(s)	122, 670
BstMBI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
BstV1I	GCAGC	2 cut(s)	22, 595
BstX2I	RGATCY	2 cut(s)	403, 565
BstYI	RGATCY	2 cut(s)	403, 565
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	634, 666
BtsCI	GGATG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	757
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	522, 762
CviAII	CATG	1 cut(s)	574
CviQI	GTAC	2 cut(s)	522, 762
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	7 cut(s)	69, 150, 198, 300, 318, 405, 567
DpnII	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
EaeI	YGGCCR	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	660
Eco57I	CTGAAG	2 cut(s)	135, 287
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	1 cut(s)	577
FaqI	GGGAC	2 cut(s)	726, 866
FatI	CATG	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	36, 584
FokI	GGATG	1 cut(s)	655
Fsp4HI	GCNGC	2 cut(s)	36, 584
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	2 cut(s)	36, 584
HaeIII	GGCC	2 cut(s)	634, 666
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	4 cut(s)	350, 416, 452, 485
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	3 cut(s)	64, 557, 675
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	180, 457, 628
Hpy188III	TCNNGA	5 cut(s)	113, 322, 489, 810, 859
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	95, 504, 571
HpyCH4III	ACNGT	1 cut(s)	761
HpyCH4IV	ACGT	4 cut(s)	131, 202, 715, 764
HpyCH4V	TGCA	9 cut(s)	89, 230, 507, 514, 611, 646, 713, 781, 824
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	4 cut(s)	131, 202, 715, 764
Hsp92II	CATG	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
LmnI	GCTCC	2 cut(s)	289, 580
Lsp1109I	GCAGC	2 cut(s)	22, 595
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	4 cut(s)	131, 202, 715, 764
MaeIII	GTNAC	1 cut(s)	765
MalI	GATC	7 cut(s)	69, 150, 198, 300, 318, 405, 567
MboI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	2 cut(s)	403, 565
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	634
MluCI	AATT	5 cut(s)	50, 93, 245, 622, 651
MluNI	TGGCCA	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	150
Mox20I	TGGCCA	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	634
MseI	TTAA	5 cut(s)	216, 363, 620, 696, 892
Msp20I	TGGCCA	1 cut(s)	634
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	824
NdeII	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
NlaIII	CATG	1 cut(s)	577
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	824
PdmI	GAANNNNTTC	1 cut(s)	706
PfeI	GAWTC	4 cut(s)	350, 416, 452, 485
PkrI	GCNGC	2 cut(s)	37, 585
Ppu21I	YACGTR	2 cut(s)	203, 716
PshBI	ATTAAT	1 cut(s)	696
PsiI	TTATAA	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	403, 565
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	523, 763
RsaNI	GTAC	2 cut(s)	522, 762
SaqAI	TTAA	5 cut(s)	216, 363, 620, 696, 892
SatI	GCNGC	2 cut(s)	36, 584
Sau3AI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 565
Sau96I	GGNCC	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
Sse9I	AATT	5 cut(s)	50, 93, 245, 622, 651
SsiI	CCGC	1 cut(s)	407
SspI	AATATT	2 cut(s)	694, 819
SspMI	CTAG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	1 cut(s)	761
TaiI	ACGT	4 cut(s)	134, 205, 718, 767
TaqI	TCGA	3 cut(s)	312, 391, 837
TasI	AATT	5 cut(s)	50, 93, 245, 622, 651
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	4 cut(s)	350, 416, 452, 485
Tru1I	TTAA	5 cut(s)	216, 363, 620, 696, 892
Tru9I	TTAA	5 cut(s)	216, 363, 620, 696, 892
TscAI	CASTG	1 cut(s)	764
TseI	GCWGC	2 cut(s)	35, 583
TspDTI	ATGAA	5 cut(s)	125, 498, 590, 779, 859
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	764
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	2 cut(s)	622, 651
XmnI	GAANNNNTTC	1 cut(s)	706
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.