Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Forward (+)

3424082 .. 3429790

Gene Structure 5709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCAGAAGCTGTCATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATCTGGCTACAAACTGCTGATGGGTCAATCCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGTCCCATGATATGTAGAGAAATACTTCAGACAGGCATGGGATCGTCCAAAAACTATGCTATATCACTTCCTCAACGAGTTAACCCTGCCGTTTTGGGGTTAATACTTGACTACTGCCGGTTTCATCAAGTACCAGGTCGCTCTAATAAGGAACGCAAAACTTTTGATGAGAAATTTATTCGGATGGATACAAAGAAGTTATGCGAGTTGACATCAGCTGCTGACAGCCTACAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCACGAATTATTGAAGGAAAAACTCCTGAAGAGATACGGGAGACATTTCATTTACCTGATGATCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACCGATGATCCACGTATCCGGCTTCTTAATCGTCTATATGCAAGAAAGAGGAAAGAATTGAAAGAGAGAGAGAAACTGAAGAATGTTGAGGTGGAGGAGGAGCGTGTTGATCAGCGTTCCGTCGATGATCTCTTGACATTTATAAATGGTGGAAATGGAGATTCAAAGGGAGTTAAAACCAATAAGAATAAGAAGAAGAATCGAAGAAGAAAAGATCCGCCAAAAGATTCTTCAAATAATGTCAATGGAAACCTTAATAAGGAATCAGAAGCTCTTTCTTCTGCTTTCCACAATGAATCCCGACCTTCTAGCTCTTGCAACGTGCAAGATTGTACAGCTATTGAGTTTGATGATGGTGATGTTGATGATGATTTAGATCCTGCCATGAAGGAGCAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCCTTAGGCCAAGAAAGGAGACTTGCACCAATAAATATTAATGGAAATGGTTCTGCACGTAGATATACAAGTTTGGATCAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

344

Amino Acids

39.43

Weight (kDa)

5.61

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	116 - 153	1.5e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AciI	CCGC	2 cut(s)	20, 698
AclWI	GGATC	5 cut(s)	157, 482, 689, 851, 1032
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	3 cut(s)	281, 913, 942
AcuI	CTGAAG	3 cut(s)	119, 426, 578
AfaI	GTAC	2 cut(s)	240, 814
AfiI	CCNNNNNNNGG	2 cut(s)	204, 739
AgsI	TTSAA	5 cut(s)	346, 392, 541, 645, 714
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	6 cut(s)	11, 326, 752, 792, 818, 877
AluI	AGCT	6 cut(s)	11, 326, 752, 792, 818, 877
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	413, 961
AlwI	GGATC	5 cut(s)	157, 482, 689, 851, 1032
AlwNI	CAGNNNCTG	2 cut(s)	11, 329
AoxI	GGCC	2 cut(s)	923, 955
ApeKI	GCWGC	2 cut(s)	326, 874
ApoI	RAATTY	3 cut(s)	281, 913, 942
AseI	ATTAAT	1 cut(s)	987
Asp700I	GAANNNNTTC	2 cut(s)	132, 997
AsuHPI	GGTGA	2 cut(s)	355, 848
AxyI	CCTNAGG	1 cut(s)	952
BalI	TGGCCA	1 cut(s)	925
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	313, 886
BccI	CCATC	3 cut(s)	62, 286, 827
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	289, 506
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	413, 961
BfaI	CTAG	1 cut(s)	789
BfuI	GTATCC	2 cut(s)	289, 506
BisI	GCNGC	2 cut(s)	327, 875
BlsI	GCNGC	2 cut(s)	328, 876
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	924
BsaAI	YACGTR	2 cut(s)	494, 1007
BsaBI	GATNNNNATC	1 cut(s)	855
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 739
Bse118I	RCCGGY	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	952
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	297, 939
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	204, 739
BseMII	CTCAG	2 cut(s)	24, 461
BseRI	GAGGAG	4 cut(s)	464, 467, 590, 593
BseXI	GCAGC	2 cut(s)	313, 886
BsgI	GTGCAG	1 cut(s)	987
BshFI	GGCC	2 cut(s)	925, 957
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	226, 499
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	204, 739
BsmAI	GTCTC	2 cut(s)	413, 961
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	925, 957
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	812
Bsp143I	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
BspACI	CCGC	2 cut(s)	20, 698
BspANI	GGCC	2 cut(s)	925, 957
BspCNI	CTCAG	2 cut(s)	25, 462
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	5 cut(s)	157, 482, 689, 851, 1032
BsrFI	RCCGGY	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	812
BssAI	RCCGGY	1 cut(s)	225
BssMI	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	87, 402
BstAUI	TGTACA	1 cut(s)	812
BstBAI	YACGTR	2 cut(s)	494, 1007
BstDEI	CTNAG	3 cut(s)	33, 470, 952
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	2 cut(s)	297, 939
BstKTI	GATC	9 cut(s)	152, 361, 442, 490, 592, 610, 697, 859, 1027
BstMAI	GTCTC	2 cut(s)	413, 961
BstMBI	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	313, 886
BstX2I	RGATCY	2 cut(s)	694, 856
BstYI	RGATCY	2 cut(s)	694, 856
Bsu36I	CCTNAGG	1 cut(s)	952
BsuI	GTATCC	2 cut(s)	289, 506
BsuRI	GGCC	2 cut(s)	925, 957
BtsCI	GGATG	2 cut(s)	297, 939
CaiI	CAGNNNCTG	2 cut(s)	11, 329
Cfr10I	RCCGGY	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	239, 813
CviAII	CATG	4 cut(s)	16, 115, 145, 865
CviQI	GTAC	2 cut(s)	239, 813
DdeI	CTNAG	3 cut(s)	33, 470, 952
DpnI	GATC	9 cut(s)	151, 360, 441, 489, 591, 609, 696, 858, 1026
DpnII	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	2 cut(s)	87, 402
EarI	CTCTTC	2 cut(s)	87, 402
EciI	GGCGGA	1 cut(s)	687
Eco57I	CTGAAG	3 cut(s)	119, 426, 578
Eco81I	CCTNAGG	1 cut(s)	952
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	19, 118, 148, 868
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	15, 114, 144, 864
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	327, 875
FokI	GGATG	2 cut(s)	304, 946
Fsp4HI	GCNGC	2 cut(s)	327, 875
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	2 cut(s)	327, 875
HaeIII	GGCC	2 cut(s)	925, 957
HapII	CCGG	2 cut(s)	226, 499
Hin1II	CATG	4 cut(s)	19, 118, 148, 868
HincII	GTYRAC	2 cut(s)	190, 318
HindII	GTYRAC	2 cut(s)	190, 318
HinfI	GANTC	5 cut(s)	641, 679, 707, 743, 776
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	226, 499
HphI	GGTGA	2 cut(s)	355, 848
Hpy166II	GTNNAC	2 cut(s)	190, 318
Hpy188I	TCNGA	7 cut(s)	7, 138, 291, 471, 748, 919, 1029
Hpy188III	TCNNGA	3 cut(s)	404, 613, 780
Hpy8I	GTNNAC	2 cut(s)	190, 318
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	386, 795, 862
HpyCH4IV	ACGT	3 cut(s)	493, 801, 1006
HpyCH4V	TGCA	8 cut(s)	380, 521, 798, 805, 902, 937, 974, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	3 cut(s)	33, 470, 952
HpySE526I	ACGT	3 cut(s)	493, 801, 1006
Hsp92II	CATG	4 cut(s)	19, 118, 148, 868
Ksp22I	TGATCA	1 cut(s)	589
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
LmnI	GCTCC	2 cut(s)	580, 871
Lsp1109I	GCAGC	2 cut(s)	313, 886
LweI	GCATC	1 cut(s)	924
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	3 cut(s)	493, 801, 1006
MalI	GATC	9 cut(s)	151, 360, 441, 489, 591, 609, 696, 858, 1026
MboI	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	2 cut(s)	694, 856
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	925
MluCI	AATT	6 cut(s)	281, 341, 384, 536, 913, 942
MluNI	TGGCCA	1 cut(s)	925
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	925
MroXI	GAANNNNTTC	2 cut(s)	132, 997
MscI	TGGCCA	1 cut(s)	925
MseI	TTAA	7 cut(s)	189, 209, 507, 654, 735, 911, 987
Msp20I	TGGCCA	1 cut(s)	925
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	226, 499
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
NlaIII	CATG	4 cut(s)	19, 118, 148, 868
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	132, 997
PfeI	GAWTC	5 cut(s)	641, 679, 707, 743, 776
PkrI	GCNGC	2 cut(s)	328, 876
Ppu21I	YACGTR	2 cut(s)	494, 1007
PshBI	ATTAAT	1 cut(s)	987
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	11, 329
PsuI	RGATCY	2 cut(s)	694, 856
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	240, 814
RsaNI	GTAC	2 cut(s)	239, 813
SaqAI	TTAA	7 cut(s)	189, 209, 507, 654, 735, 911, 987
SatI	GCNGC	2 cut(s)	327, 875
Sau3AI	GATC	9 cut(s)	149, 358, 439, 487, 589, 607, 694, 856, 1024
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	376
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	924
Sse9I	AATT	6 cut(s)	281, 341, 384, 536, 913, 942
SsiI	CCGC	2 cut(s)	20, 698
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	241
TaiI	ACGT	3 cut(s)	496, 804, 1009
TaqI	TCGA	2 cut(s)	603, 682
TasI	AATT	6 cut(s)	281, 341, 384, 536, 913, 942
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	5 cut(s)	641, 679, 707, 743, 776
Tru1I	TTAA	7 cut(s)	189, 209, 507, 654, 735, 911, 987
Tru9I	TTAA	7 cut(s)	189, 209, 507, 654, 735, 911, 987
TseI	GCWGC	2 cut(s)	326, 874
TspDTI	ATGAA	5 cut(s)	53, 221, 416, 789, 881
TspGWI	ACGGA	1 cut(s)	589
VspI	ATTAAT	1 cut(s)	987
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	281, 913, 942
XmnI	GAANNNNTTC	2 cut(s)	132, 997
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.