Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

12775678 .. 12780211

Gene Structure 4534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14420.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCGGAAGGCGACATGGCGGTTATTAAACCAAAGATGTTGAAGTCATATATATGGCTTCAGACTACAGATGGTTCAATCCAGCAAGTGGAGCAAGAAGTTGCCATGTTTTGCCCATTGATATGTCGAGAGGTTATACAAAAGGGGATGGGGTCGTCCAAAACACATGCAATATCTCTTCCAGAGAGAGTAAATACTGCGATGTTGAGCCTAATTCTTGATTACTGTAGGTTTCATCAAGTACTGGGTCGCTCTAATAAGGAATGCAAGTCGTTTGATGAAAAATTTATTCGAATGGACACACAGAGGCTCTGTGAGTTGACATCAGCTGCTGACAGCCTCCAGTTAAAGCCATTGGTCGATCTGACCAGTCGTGCCCTTGCGCGAATAATTGAAGGGAAAACGCCGGAGGAGATACGTGAGATATTTCATCTTCCTGATGATCTTACTGAGGAAGAGAAGTTGGAGCCATTGAAAAATGTGACTGATGATCCGCGGATACGGCTTTTGAATCGACTGTATGCAAGAAAGAGGAAAGAACTTAAGGAAAGAGAGAAATTGAAGAATACTGAGAATGGAGAGCAAAATGATGACCGTTCAGTAGACGATCTCCTGTCATTCATTAACGGAGAAATTGGAGATTCCAAAGAGATCAAATCATCCAAGAATAAAAAGAAGAATCGTAGAAGAAAAGATCAGCAGAAAAATACTTGCCTATATGAGGCCAATGGCAGCCATGAGGAGAAAAGTTTAAACTTTGTTTGCCCCAGTGACGATGTCAACAAATTTAGGCCCAGTCCCAGTTTGACGTTAACGTTACAAGATCTGGAACATGACAGTCTGAATGATCAGCTTGAGCTTGATGATGGTGATATCGATGATGAGATTGATCCAGCTTTAAAAGCACAAATTGATAGGGAGGTTGAAGATTTTGCTCGGAGGTTGAACTCTGACTGGCCTCAAAGGATGCAAGAAATTCTATCTTTGGGTCAAGAAAGGAGGCGGGCACAATTTTCTGTTAACGGAAATGATTCTTTAAGAAGATATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

351

Amino Acids

40.47

Weight (kDa)

5.46

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	117 - 155	1.2e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	2 cut(s)	385, 496
AciI	CCGC	4 cut(s)	20, 494, 496, 1003
AclI	AACGTT	1 cut(s)	815
AclWI	GGATC	2 cut(s)	485, 884
AcsI	RAATTY	3 cut(s)	284, 785, 975
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	88, 721
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	8 cut(s)	43, 78, 395, 475, 511, 562, 926, 946
AluBI	AGCT	4 cut(s)	329, 853, 859, 896
AluI	AGCT	4 cut(s)	329, 853, 859, 896
AlwI	GGATC	2 cut(s)	485, 884
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	723, 791, 956
ApeKI	GCWGC	2 cut(s)	329, 732
ApoI	RAATTY	3 cut(s)	284, 785, 975
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	881
AsuII	TTCGAA	1 cut(s)	292
BaeGI	GKGCMC	2 cut(s)	379, 1009
BbvI	GCAGC	2 cut(s)	316, 744
BccI	CCATC	3 cut(s)	65, 142, 860
BceAI	ACGGC	1 cut(s)	518
BciVI	GTATCC	1 cut(s)	492
BclI	TGATCA	1 cut(s)	847
BfmI	CTRYAG	2 cut(s)	66, 226
BfrI	CTTAAG	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	2 cut(s)	330, 733
BlsI	GCNGC	2 cut(s)	331, 734
BmcAI	AGTACT	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	1 cut(s)	468
BmrI	ACTGGG	4 cut(s)	254, 762, 789, 795
BmsI	GCATC	1 cut(s)	957
BmuI	ACTGGG	4 cut(s)	254, 762, 789, 795
BpmI	CTGGAG	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	875
Bsa29I	ATCGAT	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 721
Bse1I	ACTGG	7 cut(s)	249, 343, 369, 768, 795, 801, 959
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	3 cut(s)	153, 659, 972
BseLI	CCNNNNNNNGG	2 cut(s)	88, 721
BseMII	CTCAG	2 cut(s)	441, 561
BseNI	ACTGG	7 cut(s)	249, 343, 369, 768, 795, 801, 959
BseRI	GAGGAG	2 cut(s)	425, 755
BseSI	GKGCMC	2 cut(s)	379, 1009
BseXI	GCAGC	2 cut(s)	316, 744
Bsh1236I	CGCG	2 cut(s)	385, 496
BshFI	GGCC	3 cut(s)	725, 793, 958
BshVI	ATCGAT	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	2 cut(s)	88, 721
BsmFI	GGGAC	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	725, 793, 958
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	379, 1009
Bsp143I	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
BspACI	CCGC	4 cut(s)	20, 494, 496, 1003
BspANI	GGCC	3 cut(s)	725, 793, 958
BspCNI	CTCAG	2 cut(s)	442, 562
BspDI	ATCGAT	1 cut(s)	876
BspFNI	CGCG	2 cut(s)	385, 496
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	485, 884
BspT104I	TTCGAA	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	542
BsrI	ACTGG	7 cut(s)	249, 343, 369, 768, 795, 801, 959
BssECI	CCNNGG	1 cut(s)	494
BssMI	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
Bst4CI	ACNGT	4 cut(s)	227, 519, 596, 839
Bst6I	CTCTTC	2 cut(s)	183, 450
BstAFI	CTTAAG	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	2 cut(s)	450, 570
BstDSI	CCRYGG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	153, 659, 972
BstFNI	CGCG	2 cut(s)	385, 496
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	9 cut(s)	364, 445, 493, 610, 654, 697, 826, 850, 892
BstMBI	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 502, 902
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	2 cut(s)	66, 226
BstSLI	GKGCMC	2 cut(s)	379, 1009
BstUI	CGCG	2 cut(s)	385, 496
BstV1I	GCAGC	2 cut(s)	316, 744
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
Bsu15I	ATCGAT	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	725, 793, 958
BsuTUI	ATCGAT	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	494
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	153, 659, 972
BtsIMutI	CAGTG	1 cut(s)	775
Cac8I	GCNNGC	1 cut(s)	1005
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	792
Cfr42I	CCGCGG	1 cut(s)	497
ClaI	ATCGAT	1 cut(s)	876
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	5 cut(s)	16, 106, 167, 737, 833
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	450, 570
DpnI	GATC	9 cut(s)	363, 444, 492, 609, 653, 696, 825, 849, 891
DpnII	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
DraI	TTTAAA	2 cut(s)	753, 900
Eam1104I	CTCTTC	2 cut(s)	183, 450
EarI	CTCTTC	2 cut(s)	183, 450
Eco32I	GATATC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoRV	GATATC	1 cut(s)	874
FaeI	CATG	5 cut(s)	19, 109, 170, 740, 836
FalI	AAGNNNNNCTT	1 cut(s)	1033
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	5 cut(s)	15, 105, 166, 736, 832
FauI	CCCGC	1 cut(s)	996
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	330, 733
FokI	GGATG	3 cut(s)	160, 646, 979
Fsp4HI	GCNGC	2 cut(s)	330, 733
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	330, 733
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	725, 793, 958
HapII	CCGG	1 cut(s)	407
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	19, 109, 170, 740, 836
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	4 cut(s)	321, 781, 813, 1021
HindII	GTYRAC	4 cut(s)	321, 781, 813, 1021
HinfI	GANTC	4 cut(s)	511, 641, 679, 1031
HpaI	GTTAAC	2 cut(s)	813, 1021
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	5 cut(s)	321, 604, 781, 813, 1021
Hpy188I	TCNGA	6 cut(s)	7, 63, 366, 843, 939, 952
Hpy188III	TCNNGA	6 cut(s)	128, 182, 218, 437, 827, 992
Hpy8I	GTNNAC	5 cut(s)	321, 604, 781, 813, 1021
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	4 cut(s)	227, 519, 596, 839
HpyCH4IV	ACGT	3 cut(s)	418, 809, 815
HpyCH4V	TGCA	4 cut(s)	170, 267, 524, 970
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 502, 902
HpyF3I	CTNAG	2 cut(s)	450, 570
HpySE526I	ACGT	3 cut(s)	418, 809, 815
Hsp92II	CATG	5 cut(s)	19, 109, 170, 740, 836
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	847
KspAI	GTTAAC	2 cut(s)	813, 1021
KspI	CCGCGG	1 cut(s)	497
Kzo9I	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
LmnI	GCTCC	2 cut(s)	91, 466
Lsp1109I	GCAGC	2 cut(s)	316, 744
LweI	GCATC	1 cut(s)	957
MaeII	ACGT	3 cut(s)	418, 809, 815
MaeIII	GTNAC	3 cut(s)	481, 770, 816
MalI	GATC	9 cut(s)	363, 444, 492, 609, 653, 696, 825, 849, 891
MboI	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
MboII	GAAGA	8 cut(s)	170, 425, 467, 574, 688, 699, 938, 1053
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	2 cut(s)	379, 1009
MluCI	AATT	9 cut(s)	213, 284, 390, 557, 633, 785, 909, 975, 1010
MmeI	TCCRAC	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	9 cut(s)	27, 347, 543, 624, 752, 812, 899, 1020, 1037
MslI	CAYNNNNRTG	2 cut(s)	52, 121
MspA1I	CMGCKG	2 cut(s)	329, 496
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	407
MssI	GTTTAAAC	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	269
MvnI	CGCG	2 cut(s)	385, 496
MwoI	GCNNNNNNNGC	3 cut(s)	91, 502, 902
NdeII	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
NlaIII	CATG	5 cut(s)	19, 109, 170, 740, 836
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	481, 770
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	292
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	4 cut(s)	511, 641, 679, 1031
PflFI	GACNNNGTC	1 cut(s)	776
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	331, 734
PmeI	GTTTAAAC	1 cut(s)	753
Ppu21I	YACGTR	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	815
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	823
PsyI	GACNNNGTC	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	52, 121
SacII	CCGCGG	1 cut(s)	497
SaqAI	TTAA	9 cut(s)	27, 347, 543, 624, 752, 812, 899, 1020, 1037
SatI	GCNGC	2 cut(s)	330, 733
Sau3AI	GATC	9 cut(s)	361, 442, 490, 607, 651, 694, 823, 847, 889
Sau96I	GGNCC	1 cut(s)	792
ScaI	AGTACT	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	379, 1009
SfaNI	GCATC	1 cut(s)	957
SfcI	CTRYAG	2 cut(s)	66, 226
Sfr303I	CCGCGG	1 cut(s)	497
SfuI	TTCGAA	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	497
SmiMI	CAYNNNNRTG	2 cut(s)	52, 121
SmlI	CTYRAG	2 cut(s)	542, 854
SmoI	CTYRAG	2 cut(s)	542, 854
Sse9I	AATT	9 cut(s)	213, 284, 390, 557, 633, 785, 909, 975, 1010
SsiI	CCGC	4 cut(s)	20, 494, 496, 1003
TaaI	ACNGT	4 cut(s)	227, 519, 596, 839
TaiI	ACGT	3 cut(s)	421, 812, 818
TaqI	TCGA	5 cut(s)	127, 292, 360, 514, 876
TasI	AATT	9 cut(s)	213, 284, 390, 557, 633, 785, 909, 975, 1010
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	511, 641, 679, 1031
Tru1I	TTAA	9 cut(s)	27, 347, 543, 624, 752, 812, 899, 1020, 1037
Tru9I	TTAA	9 cut(s)	27, 347, 543, 624, 752, 812, 899, 1020, 1037
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	2 cut(s)	481, 770
TseI	GCWGC	2 cut(s)	329, 732
Tsp45I	GTSAC	2 cut(s)	481, 770
TspDTI	ATGAA	4 cut(s)	224, 294, 419, 610
TspGWI	ACGGA	2 cut(s)	642, 1038
TspRI	CASTG	1 cut(s)	775
Tth111I	GACNNNGTC	1 cut(s)	776
Van91I	CCANNNNNTGG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	542
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	3 cut(s)	284, 785, 975
XceI	RCATGY	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	603
XmnI	GAANNNNTTC	1 cut(s)	1030
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.