Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

51108218 .. 51111882

Gene Structure 3665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTCAGAAGCTGTCATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATCTGGCTACAAACTGCTGATGGGTCAATCCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGTCCCATGATATGTCGAGAAATACTTCAGACAGGCATGGGATCGTCCAAAAACTATGCTATATCACTTCCTCAACGAGTTAACCCTGCCGTTTTGGGGTTAATACTTGACTACTGCCGGTTTCATCAAGTACCAGGTCGCTCTAATAAGGAACGCAAAACTTTTGATGAGAAATTTATTCGGATGGATACAAAGAAGTTATGCGAGTTGACATCAGCTGCTGACAGCCTACAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCACGAATTATTGAAGGAAAAACTCCTGAAGAGATACGGGAGACATTTCATTTACCTGATGATCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACCGATGATCCACGTATCCGGCTTCTTAATCGTCTATATGCAAGAAAGAGGAAAGAATTGAAAGAGAGAGAGAAACTGAAGAATGTTGAGGTGGAGGAGGAGCGTGTTGATCAGCGTTCCGTCGATGATCTCTTGACATTTATAAATGGTGGAAATGGAGATTCAAAGGGAGTTAAAACCAATAAGAATAAGAAGAAAAATCGAAGAAGAAAAGATCTGCCAAAAGATTCTTCAAATAATGTCAATGGAAACCATAATAAGGAATCAGAAGCTCTTTCTTCTGCTTTCCACAATGAATCCCGACCTTCTAGCTCTTGCAACTTGCAAGATTGTACAGCTATTGAGTTTGATGATGGTGATGTTGATGTTGATGATGATTTAGATCCTGCCATGAAGGAGCAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCCTTAGGCCAAGAAAGGAGACTTACACCAATAAATATTAATGGAAATGGTTCTGCACGTAGATATACAAGTATGTTCCCTCTTCCCCTCCTGTTTTCCCACTGTATGTTACTTCCTCTGTTGCATATTTTTCATTTTCTTTTCAAAGCTTCTGGAAGAATATTTGCATTCCTTGTGTTCGAGGATATTATTGGGGACTTCTTGAGGCATTTCATATCTTCTTTCTTGGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

396

Amino Acids

45.56

Weight (kDa)

5.89

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	116 - 153	1.9e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	3 cut(s)	157, 482, 857
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	3 cut(s)	281, 919, 948
AcuI	CTGAAG	3 cut(s)	119, 426, 578
AfaI	GTAC	2 cut(s)	240, 814
AfiI	CCNNNNNNNGG	2 cut(s)	204, 739
AgsI	TTSAA	6 cut(s)	346, 392, 541, 645, 714, 1099
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	7 cut(s)	11, 326, 752, 792, 818, 883, 1103
AluI	AGCT	7 cut(s)	11, 326, 752, 792, 818, 883, 1103
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	413, 967
AlwI	GGATC	3 cut(s)	157, 482, 857
AlwNI	CAGNNNCTG	2 cut(s)	11, 329
AoxI	GGCC	2 cut(s)	929, 961
ApeKI	GCWGC	2 cut(s)	326, 880
ApoI	RAATTY	3 cut(s)	281, 919, 948
AseI	ATTAAT	1 cut(s)	993
Asp700I	GAANNNNTTC	2 cut(s)	132, 1003
AsuHPI	GGTGA	2 cut(s)	355, 848
AxyI	CCTNAGG	1 cut(s)	958
BalI	TGGCCA	1 cut(s)	931
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	313, 892
BccI	CCATC	3 cut(s)	62, 286, 827
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	289, 506
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	413, 967
BfaI	CTAG	1 cut(s)	789
BfuI	GTATCC	2 cut(s)	289, 506
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	2 cut(s)	327, 881
BlsI	GCNGC	2 cut(s)	328, 882
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	1177
BsaAI	YACGTR	2 cut(s)	494, 1013
BsaBI	GATNNNNATC	1 cut(s)	861
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 739
Bse118I	RCCGGY	1 cut(s)	225
Bse21I	CCTNAGG	1 cut(s)	958
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	297, 945
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	2 cut(s)	204, 739
BseMII	CTCAG	2 cut(s)	24, 461
BseRI	GAGGAG	4 cut(s)	464, 467, 590, 593
BseXI	GCAGC	2 cut(s)	313, 892
BsgI	GTGCAG	1 cut(s)	993
BshFI	GGCC	2 cut(s)	931, 963
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	226, 499
BslFI	GGGAC	2 cut(s)	96, 1163
BslI	CCNNNNNNNGG	2 cut(s)	204, 739
BsmAI	GTCTC	2 cut(s)	413, 967
BsmFI	GGGAC	2 cut(s)	96, 1163
BsmI	GAATGC	1 cut(s)	1121
BsnI	GGCC	2 cut(s)	931, 963
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	812
Bsp143I	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	931, 963
BspCNI	CTCAG	2 cut(s)	25, 462
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	3 cut(s)	157, 482, 857
BsrFI	RCCGGY	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	812
BssAI	RCCGGY	1 cut(s)	225
BssMI	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	1058
Bst6I	CTCTTC	3 cut(s)	87, 402, 1041
BstAUI	TGTACA	1 cut(s)	812
BstBAI	YACGTR	2 cut(s)	494, 1013
BstDEI	CTNAG	3 cut(s)	33, 470, 958
BstF5I	GGATG	2 cut(s)	297, 945
BstKTI	GATC	8 cut(s)	152, 361, 442, 490, 592, 610, 697, 865
BstMAI	GTCTC	2 cut(s)	413, 967
BstMBI	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	313, 892
BstX2I	RGATCY	2 cut(s)	694, 862
BstYI	RGATCY	2 cut(s)	694, 862
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	289, 506
BsuRI	GGCC	2 cut(s)	931, 963
BtsCI	GGATG	2 cut(s)	297, 945
BtsIMutI	CAGTG	1 cut(s)	1054
CaiI	CAGNNNCTG	2 cut(s)	11, 329
Cfr10I	RCCGGY	1 cut(s)	225
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	239, 813
CviAII	CATG	4 cut(s)	16, 115, 145, 871
CviQI	GTAC	2 cut(s)	239, 813
DdeI	CTNAG	3 cut(s)	33, 470, 958
DpnI	GATC	8 cut(s)	151, 360, 441, 489, 591, 609, 696, 864
DpnII	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
EaeI	YGGCCR	1 cut(s)	929
Eam1104I	CTCTTC	3 cut(s)	87, 402, 1041
EarI	CTCTTC	3 cut(s)	87, 402, 1041
Eco57I	CTGAAG	3 cut(s)	119, 426, 578
Eco81I	CCTNAGG	1 cut(s)	958
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	19, 118, 148, 874
FaqI	GGGAC	2 cut(s)	96, 1163
FatI	CATG	4 cut(s)	15, 114, 144, 870
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	327, 881
FokI	GGATG	2 cut(s)	304, 952
Fsp4HI	GCNGC	2 cut(s)	327, 881
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	2 cut(s)	327, 881
HaeIII	GGCC	2 cut(s)	931, 963
HapII	CCGG	2 cut(s)	226, 499
Hin1II	CATG	4 cut(s)	19, 118, 148, 874
HincII	GTYRAC	2 cut(s)	190, 318
HindII	GTYRAC	2 cut(s)	190, 318
HindIII	AAGCTT	1 cut(s)	1101
HinfI	GANTC	4 cut(s)	641, 707, 743, 776
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	226, 499
HphI	GGTGA	2 cut(s)	355, 848
Hpy166II	GTNNAC	2 cut(s)	190, 318
Hpy188I	TCNGA	6 cut(s)	7, 138, 291, 471, 748, 925
Hpy188III	TCNNGA	6 cut(s)	125, 404, 613, 780, 1107, 1156
Hpy8I	GTNNAC	2 cut(s)	190, 318
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	386, 795, 868
HpyCH4III	ACNGT	1 cut(s)	1058
HpyCH4IV	ACGT	2 cut(s)	493, 1012
HpyCH4V	TGCA	9 cut(s)	380, 521, 798, 805, 908, 943, 1010, 1078, 1121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	3 cut(s)	33, 470, 958
HpySE526I	ACGT	2 cut(s)	493, 1012
Hsp92II	CATG	4 cut(s)	19, 118, 148, 874
Ksp22I	TGATCA	1 cut(s)	589
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
LmnI	GCTCC	2 cut(s)	580, 877
Lsp1109I	GCAGC	2 cut(s)	313, 892
LweI	GCATC	1 cut(s)	930
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	493, 1012
MaeIII	GTNAC	1 cut(s)	1062
MalI	GATC	8 cut(s)	151, 360, 441, 489, 591, 609, 696, 864
MboI	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	2 cut(s)	694, 862
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	931
MluCI	AATT	6 cut(s)	281, 341, 384, 536, 919, 948
MluNI	TGGCCA	1 cut(s)	931
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	931
MroXI	GAANNNNTTC	2 cut(s)	132, 1003
MscI	TGGCCA	1 cut(s)	931
MseI	TTAA	7 cut(s)	189, 209, 507, 654, 917, 993, 1189
Msp20I	TGGCCA	1 cut(s)	931
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	226, 499
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	1121
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
NlaIII	CATG	4 cut(s)	19, 118, 148, 874
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	395
PctI	GAATGC	1 cut(s)	1121
PdmI	GAANNNNTTC	2 cut(s)	132, 1003
PfeI	GAWTC	4 cut(s)	641, 707, 743, 776
PkrI	GCNGC	2 cut(s)	328, 882
Ppu21I	YACGTR	2 cut(s)	494, 1013
PshBI	ATTAAT	1 cut(s)	993
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	11, 329
PsuI	RGATCY	2 cut(s)	694, 862
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	2 cut(s)	240, 814
RsaNI	GTAC	2 cut(s)	239, 813
SaqAI	TTAA	7 cut(s)	189, 209, 507, 654, 917, 993, 1189
SatI	GCNGC	2 cut(s)	327, 881
Sau3AI	GATC	8 cut(s)	149, 358, 439, 487, 589, 607, 694, 862
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	376
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	930
SmlI	CTYRAG	1 cut(s)	1156
SmoI	CTYRAG	1 cut(s)	1156
Sse9I	AATT	6 cut(s)	281, 341, 384, 536, 919, 948
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	2 cut(s)	991, 1116
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	1058
TaiI	ACGT	2 cut(s)	496, 1015
TaqI	TCGA	4 cut(s)	124, 603, 682, 1134
TasI	AATT	6 cut(s)	281, 341, 384, 536, 919, 948
TatI	WGTACW	1 cut(s)	812
TfiI	GAWTC	4 cut(s)	641, 707, 743, 776
Tru1I	TTAA	7 cut(s)	189, 209, 507, 654, 917, 993, 1189
Tru9I	TTAA	7 cut(s)	189, 209, 507, 654, 917, 993, 1189
TscAI	CASTG	1 cut(s)	1061
TseI	GCWGC	2 cut(s)	326, 880
TspDTI	ATGAA	7 cut(s)	53, 221, 416, 789, 887, 1076, 1156
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	1 cut(s)	1061
VspI	ATTAAT	1 cut(s)	993
XapI	RAATTY	3 cut(s)	281, 919, 948
XmnI	GAANNNNTTC	2 cut(s)	132, 1003
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.