Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

19492954 .. 19495784

Gene Structure 2831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCAGAAGGTGTCATGGCGGTTGTCAAACCTGAGATGAAATCTTACATCTGGCTTCAAACTGCTGACGGCTCAATCCAACAAGTAGAAGAAGAGGTTGCCATGTTCTGTCCCATGATATGCCGAGAAATATTGCAAACAGGAATGGGATCATCTAAAAACTATGCTATATCACTTCCTCAACGAGTTAATCCTGCCATTTTGGGCTTAATACTCGACTACTGTCGGTTTCATCAAGTACCTGGTCGCTCTAATAAGGAGCGCAAAATTTTTGATGAGAAATTTATTCGAATGGATACAAAAAAGTTATGCGAGTTGACATCCGCTGCTGACAGCCTCCAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCTCGAATTATTGAAGGAAAAACACCCGAGGAGATACGCGAGACATTTCATTTACCTGATGACCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGGAACATAACTGATGATCGATCACGTATCCGGCTTCTTAATCGGTTATATGCTAAAAAGAGGAAAGAATTAAAAGAGAGAGAGAAACTGAAGAATGTTGAGGCTGAGGAGGAGCGTGTTGATGAGCGTTCAGTTGATGATCTCTTGACATTTATAAATGGTGGAAATAGAGAAGCAAAGGGGATTAAGACCAATAAGAATAAAAAGAAAAATCGAAGAAGAAAAGATCATCCAAAAGATTCTTCAACCAATGTAAATGGACATAATAAGGACTTGGATGCACTTTCTTCTGCTTCCCACGATGGTGACATAATCAATGTTGAGTTGTCGTCTCCCAGTTCTTCAAAGTTGCAAGATTCTACGTCTGTTACCTTTTCACCAAAGCTTGACTTTGATGATGGTGATTTGGATGATGATTTAGATCCTGCCATGAAGGAAGAGCTTGACAGGGAAGTGGAGGATTTTGCACGCAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCTTTAGGTCAAGAGAGGAGACTTGCACCAATAAATATCAACGGCAATGGCTCTGCACATGGATATAAAAGTTTGGACAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

357

Amino Acids

40.7

Weight (kDa)

5.75

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	116 - 153	1.5e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AccII	CGCG	1 cut(s)	417
AciI	CCGC	2 cut(s)	20, 324
AclWI	GGATC	2 cut(s)	157, 887
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	4 cut(s)	267, 281, 949, 978
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	59, 346, 392, 717, 816
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AleI	CACNNNNGTG	1 cut(s)	774
AluBI	AGCT	2 cut(s)	856, 913
AluI	AGCT	2 cut(s)	856, 913
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	3 cut(s)	413, 807, 997
AlwI	GGATC	2 cut(s)	157, 887
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	959
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	4 cut(s)	267, 281, 949, 978
AspLEI	GCGC	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	355, 788, 840, 884
AsuII	TTCGAA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	961
Bbv12I	GWGCWC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	767, 863
BceAI	ACGGC	2 cut(s)	85, 1042
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	289, 509
BcoDI	GTCTC	3 cut(s)	413, 807, 997
BfuI	GTATCC	2 cut(s)	289, 509
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	739, 960
BmuI	ACTGGG	1 cut(s)	801
BoxI	GACNNNNGTC	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	497
BsaBI	GATNNNNATC	1 cut(s)	891
BsaJI	CCNNGG	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	807
Bse3DI	GCAATG	1 cut(s)	1036
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	5 cut(s)	320, 700, 754, 886, 975
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	1036
BseMII	CTCAG	3 cut(s)	24, 461, 567
BseNI	ACTGG	1 cut(s)	807
BseRI	GAGGAG	6 cut(s)	422, 464, 467, 593, 596, 1015
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	1023
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	961
BshVI	ATCGAT	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	413, 807, 997
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	961
BsoBI	CYCGRG	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
BspACI	CCGC	2 cut(s)	20, 324
BspANI	GGCC	1 cut(s)	961
BspCNI	CTCAG	3 cut(s)	25, 462, 568
BspDI	ATCGAT	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	157, 887
BspQI	GCTCTTC	1 cut(s)	903
BspT104I	TTCGAA	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	1036
BsrI	ACTGG	1 cut(s)	807
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	87, 903
BstBAI	YACGTR	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	3 cut(s)	33, 470, 576
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	5 cut(s)	320, 700, 754, 886, 975
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	7 cut(s)	152, 361, 490, 494, 613, 700, 895
BstMAI	GTCTC	3 cut(s)	413, 807, 997
BstMBI	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
Bsu15I	ATCGAT	1 cut(s)	490
BsuI	GTATCC	2 cut(s)	289, 509
BsuRI	GGCC	1 cut(s)	961
BsuTUI	ATCGAT	1 cut(s)	490
BtsCI	GGATG	5 cut(s)	320, 700, 754, 886, 975
Cac8I	GCNNGC	1 cut(s)	940
CfoI	GCGC	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	490
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	5 cut(s)	16, 103, 115, 901, 1043
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	3 cut(s)	33, 470, 576
DpnI	GATC	7 cut(s)	151, 360, 489, 493, 612, 699, 894
DpnII	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	2 cut(s)	87, 903
EarI	CTCTTC	2 cut(s)	87, 903
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	5 cut(s)	19, 106, 118, 904, 1046
FalI	AAGNNNNNCTT	2 cut(s)	845, 877
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	15, 102, 114, 900, 1042
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	5 cut(s)	307, 687, 761, 893, 982
Fsp4HI	GCNGC	1 cut(s)	327
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	961
HapII	CCGG	1 cut(s)	502
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	19, 106, 118, 904, 1046
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	2 cut(s)	710, 827
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	4 cut(s)	355, 788, 840, 884
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	7, 471, 955
Hpy188III	TCNNGA	2 cut(s)	616, 995
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	2 cut(s)	386, 898
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	496, 833
HpyCH4V	TGCA	7 cut(s)	136, 752, 823, 938, 973, 1010, 1040
HpyF3I	CTNAG	3 cut(s)	33, 470, 576
HpySE526I	ACGT	2 cut(s)	496, 833
Hsp92II	CATG	5 cut(s)	19, 106, 118, 904, 1046
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	2 cut(s)	259, 583
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	2 cut(s)	739, 960
MabI	ACCWGGT	1 cut(s)	241
MaeII	ACGT	2 cut(s)	496, 833
MaeIII	GTNAC	2 cut(s)	776, 838
MalI	GATC	7 cut(s)	151, 360, 489, 493, 612, 699, 894
MboI	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
MboII	GAAGA	9 cut(s)	101, 104, 574, 699, 702, 705, 750, 804, 920
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	961
MluCI	AATT	7 cut(s)	267, 281, 341, 384, 539, 949, 978
MluNI	TGGCCA	1 cut(s)	961
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	961
MscI	TGGCCA	1 cut(s)	961
MseI	TTAA	6 cut(s)	189, 209, 510, 542, 657, 947
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	961
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	417
NdeII	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
NlaIII	CATG	5 cut(s)	19, 106, 118, 904, 1046
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	2 cut(s)	149, 395
NmuCI	GTSAC	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	774
PciSI	GCTCTTC	1 cut(s)	903
PfeI	GAWTC	2 cut(s)	710, 827
PkrI	GCNGC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	497
PshAI	GACNNNNGTC	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	892
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	6 cut(s)	189, 209, 510, 542, 657, 947
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	7 cut(s)	149, 358, 487, 491, 610, 697, 892
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	376
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	739, 960
SfuI	TTCGAA	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	774
Sse9I	AATT	7 cut(s)	267, 281, 341, 384, 539, 949, 978
SsiI	CCGC	2 cut(s)	20, 324
SspI	AATATT	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	2 cut(s)	499, 836
TaqI	TCGA	5 cut(s)	216, 289, 382, 490, 685
TasI	AATT	7 cut(s)	267, 281, 341, 384, 539, 949, 978
TfiI	GAWTC	2 cut(s)	710, 827
Tru1I	TTAA	6 cut(s)	189, 209, 510, 542, 657, 947
Tru9I	TTAA	6 cut(s)	189, 209, 510, 542, 657, 947
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	4 cut(s)	53, 221, 416, 917
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	4 cut(s)	267, 281, 949, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.