Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

16664442 .. 16666236

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1062700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCAGAAGGTGACATGACTGTTATTAAACCTGAGATGATGAAGTCTTATATCTGGCTTCAGACTACCGACGGTTCAATCCAACAAGTGGAACAAGAGGTTGCCATGTATTGCCCTATGATATGCAAAGAAAATATACAGAAAGGGATGGGAGCTTCCAAGAACCATGCAATATCTCTTCCTGAAAGAGTCAGTACTGCAATGTTGAGCTTAATTCTTGATTACTGCCGGTTTCATCAAGTACCAGGTCGCTCGAACAAGGAATGCAAGGCTTTTGATGAAAAATACATCCGAATGGACACCAAGTTGCTCTGTGAGTTGACTTCAGCTGCTGACAGCCTCCAATTAAAACCATTGGTGGATCTTACTAGTCATGCTCTTGCACGAATAATTGAAGGGAAAACACCTGAGGAGATACGTGAAATATTTCATCTCCCTGATGATCTTACAGAGGTCTCCGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

5.09

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	18 - 80	9.9e-06	Skp1 family, tetramerisation domain
Skp1	PF01466	117 - 151	8.7e-11	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AclWI	GGATC	1 cut(s)	369
AcuI	CTGAAG	2 cut(s)	44, 309
AfaI	GTAC	2 cut(s)	196, 243
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	78, 395
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	155, 210, 329
AluI	AGCT	3 cut(s)	155, 210, 329
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	460
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	228
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	153, 288
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	24, 399
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	361, 442
BspCNI	CTCAG	2 cut(s)	25, 400
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	2 cut(s)	361, 442
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	22, 74
Bst6I	CTCTTC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	33, 408
BstF5I	GGATG	2 cut(s)	153, 288
BstKTI	GATC	2 cut(s)	364, 445
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	2 cut(s)	361, 442
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	153, 288
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	228
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	195, 242
CviAII	CATG	4 cut(s)	16, 106, 167, 374
CviJI	RGCY	6 cut(s)	58, 155, 210, 272, 329, 339
CviKI_1	RGCY	6 cut(s)	58, 155, 210, 272, 329, 339
CviQI	GTAC	2 cut(s)	195, 242
DdeI	CTNAG	2 cut(s)	33, 408
DpnI	GATC	2 cut(s)	363, 444
DpnII	GATC	2 cut(s)	361, 442
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	460
Eco57I	CTGAAG	2 cut(s)	44, 309
Eco81I	CCTNAGG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	244
FaeI	CATG	4 cut(s)	19, 109, 170, 377
FaiI	YATR	8 cut(s)	17, 51, 107, 119, 124, 137, 168, 375
FatI	CATG	4 cut(s)	15, 105, 166, 373
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	2 cut(s)	160, 275
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	4 cut(s)	19, 109, 170, 377
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	4 cut(s)	7, 63, 293, 460
Hpy188III	TCNNGA	2 cut(s)	182, 218
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	22, 74
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	5 cut(s)	126, 170, 200, 267, 383
HpyF3I	CTNAG	2 cut(s)	33, 408
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	19, 109, 170, 377
Kzo9I	GATC	2 cut(s)	361, 442
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	8 cut(s)	40, 45, 195, 231, 242, 258, 420, 450
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	451
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	363, 444
MboI	GATC	2 cut(s)	361, 442
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	3 cut(s)	213, 344, 390
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	4 cut(s)	91, 350, 403, 445
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	3 cut(s)	27, 212, 347
MslI	CAYNNNNRTG	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	246
NdeII	GATC	2 cut(s)	361, 442
NlaIII	CATG	4 cut(s)	19, 109, 170, 377
NmuCI	GTSAC	1 cut(s)	11
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	196, 243
RsaNI	GTAC	2 cut(s)	195, 242
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	27, 212, 347
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	361, 442
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	246
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	3 cut(s)	213, 344, 390
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	22, 74
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	213, 344, 390
TatI	WGTACW	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	27, 212, 347
Tru9I	TTAA	3 cut(s)	27, 212, 347
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	56, 224, 294, 419
Van91I	CCANNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	369
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.