Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

22722710 .. 22726434

Gene Structure 3725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61415.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCCTATATATGGCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGGTCTTCTAAGAACTACGCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGTTAAGCCTGATTTTTGATTACTGCAGATTTCATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAGTTTATGATGAAAAATTCATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAGTTGAAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGAAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCTAAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCAAAGAAAAGAAAAGAATTGAAAGAAAGAGAGAAACTAAAGAGTGTCGAGGTCGAAGAACATGTCGATGAGCGTTCAGTGGATGACCTGTTATCATTTATTAATGGCAGAGATCCCAAGGTGGTAAAGACTTCCAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAACAGAAGAATGGTTCTTCAAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATAATCTTGATTCCAAATCACAAAGTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAGATGTGTCTAACTTACCTAGTATGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAGATGGTTATATAGATGATGAAATTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGAACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGCCTGTGAACTTTTCCATAAATGGCAACGGAACTTCAAGACGATTGACAGGTCCAGCTGCAGGACACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

351

Amino Acids

40.02

Weight (kDa)

5.56

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	117 - 155	1e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	1 cut(s)	420
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	3 cut(s)	485, 629, 884
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 1043
AflIII	ACRYGT	2 cut(s)	583, 716
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	725, 896, 1040
AluI	AGCT	3 cut(s)	725, 896, 1040
AlwI	GGATC	3 cut(s)	485, 629, 884
AlwNI	CAGNNNCTG	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	982, 1040
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	570, 602
AseI	ATTAAT	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	1034
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	1034
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	994, 1027
BccI	CCATC	4 cut(s)	29, 65, 289, 860
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	292
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	3 cut(s)	369, 822, 951
BfmI	CTRYAG	2 cut(s)	226, 1041
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	330, 983, 1041
BlsI	GCNGC	3 cut(s)	331, 984, 1042
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	1 cut(s)	1034
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu10I	CCTNAGC	1 cut(s)	325
Bsa29I	ATCGAT	1 cut(s)	965
BsaJI	CCNNGG	2 cut(s)	494, 639
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 1043
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	965
BseDI	CCNNGG	2 cut(s)	494, 639
BseGI	GGATG	4 cut(s)	288, 300, 493, 610
BseLI	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 1043
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	5 cut(s)	339, 399, 441, 762, 846
BseRI	GAGGAG	3 cut(s)	425, 467, 470
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	994, 1027
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	965
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	4 cut(s)	54, 88, 451, 1043
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	361, 490, 634, 889
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	5 cut(s)	338, 400, 442, 763, 847
BspDI	ATCGAT	1 cut(s)	965
BspEI	TCCGGA	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	420
BspMAI	CTGCAG	2 cut(s)	230, 1045
BspPI	GGATC	3 cut(s)	485, 629, 884
BsrDI	GCAATG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	494, 639
BssMI	GATC	4 cut(s)	361, 490, 634, 889
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	183
BstDEI	CTNAG	6 cut(s)	159, 325, 408, 450, 771, 855
BstDSI	CCRYGG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	4 cut(s)	288, 300, 493, 610
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	4 cut(s)	364, 493, 637, 892
BstMBI	GATC	4 cut(s)	361, 490, 634, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	2 cut(s)	587, 720
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	226, 1041
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	994, 1027
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu15I	ATCGAT	1 cut(s)	965
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	965
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	4 cut(s)	288, 300, 493, 610
BtsIMutI	CAGTG	1 cut(s)	606
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	1034
ClaI	ATCGAT	1 cut(s)	965
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	4 cut(s)	118, 202, 584, 717
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	6 cut(s)	159, 325, 408, 450, 771, 855
DpnI	GATC	4 cut(s)	363, 492, 636, 891
DpnII	GATC	4 cut(s)	361, 490, 634, 889
DraIII	CACNNNGTG	1 cut(s)	767
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	1034
Eco81I	CCTNAGG	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	4 cut(s)	121, 205, 587, 720
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	4 cut(s)	117, 201, 583, 716
Fnu4HI	GCNGC	3 cut(s)	330, 983, 1041
FokI	GGATG	4 cut(s)	275, 307, 500, 617
Fsp4HI	GCNGC	3 cut(s)	330, 983, 1041
FspBI	CTAG	3 cut(s)	369, 822, 951
GluI	GCNGC	3 cut(s)	330, 983, 1041
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	292
HgaI	GACGC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	121, 205, 587, 720
HincII	GTYRAC	2 cut(s)	321, 781
HindII	GTYRAC	2 cut(s)	321, 781
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	3 cut(s)	189, 499, 752
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	321, 781, 991
Hpy188I	TCNGA	2 cut(s)	7, 939
Hpy188III	TCNNGA	4 cut(s)	128, 292, 749, 1020
Hpy8I	GTNNAC	3 cut(s)	321, 781, 991
HpyAV	CCTTC	3 cut(s)	136, 679, 895
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	250, 265
HpyCH4V	TGCA	6 cut(s)	104, 228, 343, 383, 524, 1043
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	6 cut(s)	159, 325, 408, 450, 771, 855
HpySE526I	ACGT	2 cut(s)	250, 265
Hsp92II	CATG	4 cut(s)	121, 205, 587, 720
Kpn2I	TCCGGA	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	361, 490, 634, 889
Lsp1109I	GCAGC	2 cut(s)	994, 1027
MaeI	CTAG	3 cut(s)	369, 822, 951
MaeII	ACGT	2 cut(s)	250, 265
MalI	GATC	4 cut(s)	363, 492, 636, 891
MboI	GATC	4 cut(s)	361, 490, 634, 889
MboII	GAAGA	8 cut(s)	147, 170, 590, 682, 696, 706, 842, 875
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	5 cut(s)	284, 387, 461, 539, 885
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	3 cut(s)	27, 206, 624
MslI	CAYNNNNRTG	2 cut(s)	293, 588
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	332, 1040
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	4 cut(s)	361, 490, 634, 889
NlaIII	CATG	4 cut(s)	121, 205, 587, 720
NspI	RCATGY	2 cut(s)	587, 720
PciI	ACATGT	2 cut(s)	583, 716
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	499, 752
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	331, 984, 1042
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	2 cut(s)	583, 716
PshBI	ATTAAT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	1034
PstI	CTGCAG	2 cut(s)	230, 1045
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	293, 588
SaqAI	TTAA	3 cut(s)	27, 206, 624
SatI	GCNGC	3 cut(s)	330, 983, 1041
Sau3AI	GATC	4 cut(s)	361, 490, 634, 889
Sau96I	GGNCC	1 cut(s)	1034
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	379
SfcI	CTRYAG	2 cut(s)	226, 1041
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	2 cut(s)	293, 588
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	5 cut(s)	284, 387, 461, 539, 885
SsiI	CCGC	1 cut(s)	330
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	3 cut(s)	369, 822, 951
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	253, 268
TaqI	TCGA	5 cut(s)	502, 570, 576, 588, 965
TasI	AATT	5 cut(s)	284, 387, 461, 539, 885
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	499, 752
Tru1I	TTAA	3 cut(s)	27, 206, 624
Tru9I	TTAA	3 cut(s)	27, 206, 624
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	2 cut(s)	982, 1040
TspDTI	ATGAA	6 cut(s)	56, 224, 277, 294, 419, 897
TspGWI	ACGGA	2 cut(s)	511, 1026
TspRI	CASTG	1 cut(s)	606
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	1034
VspI	ATTAAT	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	2 cut(s)	587, 720
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	3 cut(s)	369, 822, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.