Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

30055605 .. 30060680

Gene Structure 5076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1205300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCAGAAGGTGTCATGGCGGTTGTCAAACCTGAGATGAAATCTTACATCTGGCTTCAAACTGCCGACGGCTCAATCCAACAAGTAGAAGAAGAGGTTGCCATGTTCTGTCCGATGATATGCCGGGAAATATTGCAAACAGGAATGGGATCTTCCAAAAACTATGCTATATCACTTCCTCAACGAGTTAATCCTGCCATTTTGGGCTTAATACTTGACTACTGTCGGTTTCATCAAGTACCCGGTCGCTCTAATAAGGAGCGCAAAACTTTTGATGAGAAATTTATTCGAATGGATACAAAAAAGTTATGCGAGTTGACATCTGCTGCTGACAGCCTCCAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCTCGAATTATTGAAGGAAAAACACCCGAGGAGATACGTGAGACATTTCATTTACCTGATGACCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACTGATGATCCACGTATCCGGCTTCTCAATCGGTTATATGCTAGAAAGAGGAAAGAATTAAAAGAGAGAGAGAAACTGAAGAATGTTGAGGCTGAGGAGGAGCGTGTCGATGAGCGTTCAGTTGACGATCTCTTGACATTTATAAATGGTGGAAATAGACAAGCAAAGGGGATTAAGACCAATAAGAATAAAAAGAAGAATCGAAGAAGAAAAGATCATCCAAAAGATTCTTCAACCAATGTAAATGGACATAATAAGGACTTGGATACACTTTCTTCTGCTTCCCACGATGGTGACACAATCAATGTTGAGTTGTTGTCTCCCAGTTCTTCAAAGTTGCAAGATTCTACATCTGTTACCTTTTCACCAAAGCTTGACTTTGATGATGGTGATTTGGATGATGATTTAGATCCTGCCATGAAGGAAGAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAATTCGGATTGGCCAGAAAGGATGCAGGAAATTTTATCTTTAGGTCAAGAGAGGAGACTTGCACCAATAAATATAAACGGCAATGGCTCTGCACGTGGATGTACAAGTTTGGACAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

356

Amino Acids

40.54

Weight (kDa)

5.66

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	116 - 153	1.5e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	3 cut(s)	157, 482, 884
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	3 cut(s)	281, 946, 975
AcuI	CTGAAG	1 cut(s)	578
AcvI	CACGTG	1 cut(s)	1040
AfaI	GTAC	2 cut(s)	240, 1048
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	5 cut(s)	59, 346, 392, 714, 813
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AleI	CACNNNNGTG	1 cut(s)	771
AluBI	AGCT	2 cut(s)	853, 910
AluI	AGCT	2 cut(s)	853, 910
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	3 cut(s)	413, 804, 994
AlwI	GGATC	3 cut(s)	157, 482, 884
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	281, 946, 975
AspLEI	GCGC	1 cut(s)	264
AsuC2I	CCSGG	2 cut(s)	125, 243
AsuHPI	GGTGA	4 cut(s)	355, 785, 837, 881
AsuII	TTCGAA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	958
BbrPI	CACGTG	1 cut(s)	1040
Bbv12I	GWGCWC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	764, 860
BceAI	ACGGC	2 cut(s)	85, 1039
BciVI	GTATCC	3 cut(s)	289, 506, 739
BcnI	CCSGG	2 cut(s)	125, 243
BcoDI	GTCTC	3 cut(s)	413, 804, 994
BfaI	CTAG	1 cut(s)	522
BfuI	GTATCC	3 cut(s)	289, 506, 739
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	125, 243
BmeT110I	CYCGRG	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	125, 243
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	957
BmuI	ACTGGG	1 cut(s)	798
BoxI	GACNNNNGTC	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	289
BpuMI	CCSGG	2 cut(s)	125, 243
BsaAI	YACGTR	3 cut(s)	416, 494, 1040
BsaBI	GATNNNNATC	1 cut(s)	888
BsaJI	CCNNGG	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	804
Bse3DI	GCAATG	1 cut(s)	1033
Bse8I	GATNNNNATC	1 cut(s)	888
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	4 cut(s)	697, 883, 972, 1049
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	1033
BseMII	CTCAG	3 cut(s)	24, 461, 564
BseNI	ACTGG	1 cut(s)	804
BseRI	GAGGAG	6 cut(s)	422, 464, 467, 590, 593, 1012
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	1020
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	958
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	124, 243, 499
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	3 cut(s)	413, 804, 994
BsnI	GGCC	1 cut(s)	958
BsoBI	CYCGRG	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	1046
Bsp143I	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	3 cut(s)	25, 462, 565
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	3 cut(s)	157, 482, 884
BspQI	GCTCTTC	1 cut(s)	900
BspT104I	TTCGAA	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	1033
BsrGI	TGTACA	1 cut(s)	1046
BsrI	ACTGG	1 cut(s)	804
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	87, 900
BstAUI	TGTACA	1 cut(s)	1046
BstBAI	YACGTR	3 cut(s)	416, 494, 1040
BstBI	TTCGAA	1 cut(s)	289
BstDEI	CTNAG	3 cut(s)	33, 470, 573
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	697, 883, 972, 1049
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	6 cut(s)	152, 361, 490, 610, 697, 892
BstMAI	GTCTC	3 cut(s)	413, 804, 994
BstMBI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
BstMCI	CGRYCG	1 cut(s)	247
BstPAI	GACNNNNGTC	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	123, 241
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	149, 889
BstYI	RGATCY	2 cut(s)	149, 889
BsuI	GTATCC	3 cut(s)	289, 506, 739
BsuRI	GGCC	1 cut(s)	958
BtsCI	GGATG	4 cut(s)	697, 883, 972, 1049
CfoI	GCGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	239, 1047
CviAII	CATG	3 cut(s)	16, 103, 898
CviQI	GTAC	2 cut(s)	239, 1047
DdeI	CTNAG	3 cut(s)	33, 470, 573
DpnI	GATC	6 cut(s)	151, 360, 489, 609, 696, 891
DpnII	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
EaeI	YGGCCR	1 cut(s)	956
Eam1104I	CTCTTC	2 cut(s)	87, 900
EarI	CTCTTC	2 cut(s)	87, 900
Eco57I	CTGAAG	1 cut(s)	578
Eco72I	CACGTG	1 cut(s)	1040
Eco88I	CYCGRG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	446
FaeI	CATG	3 cut(s)	19, 106, 901
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FatI	CATG	3 cut(s)	15, 102, 897
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	4 cut(s)	684, 890, 979, 1056
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	958
HapII	CCGG	3 cut(s)	124, 243, 499
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	19, 106, 901
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	2 cut(s)	318, 604
HindII	GTYRAC	2 cut(s)	318, 604
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	3 cut(s)	679, 707, 824
HpaII	CCGG	3 cut(s)	124, 243, 499
HphI	GGTGA	4 cut(s)	355, 785, 837, 881
Hpy166II	GTNNAC	2 cut(s)	318, 604
Hpy188I	TCNGA	4 cut(s)	7, 114, 471, 952
Hpy188III	TCNNGA	2 cut(s)	613, 992
Hpy8I	GTNNAC	2 cut(s)	318, 604
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	386, 895
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	3 cut(s)	415, 493, 1039
HpyCH4V	TGCA	6 cut(s)	136, 820, 935, 970, 1007, 1037
HpyF3I	CTNAG	3 cut(s)	33, 470, 573
HpySE526I	ACGT	3 cut(s)	415, 493, 1039
Hsp92II	CATG	3 cut(s)	19, 106, 901
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	2 cut(s)	259, 580
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	957
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	3 cut(s)	415, 493, 1039
MaeIII	GTNAC	2 cut(s)	773, 835
MalI	GATC	6 cut(s)	151, 360, 489, 609, 696, 891
MboI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	2 cut(s)	149, 889
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	958
MluCI	AATT	6 cut(s)	281, 341, 384, 536, 946, 975
MluNI	TGGCCA	1 cut(s)	958
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	958
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	5 cut(s)	189, 209, 539, 654, 944
MslI	CAYNNNNRTG	2 cut(s)	771, 1042
Msp20I	TGGCCA	1 cut(s)	958
MspI	CCGG	3 cut(s)	124, 243, 499
MspR9I	CCNGG	2 cut(s)	125, 243
MunI	CAATTG	1 cut(s)	341
NciI	CCSGG	2 cut(s)	125, 243
NdeII	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
NlaIII	CATG	3 cut(s)	19, 106, 901
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	900
PfeI	GAWTC	3 cut(s)	679, 707, 824
PkrI	GCNGC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	1040
PmlI	CACGTG	1 cut(s)	1040
Ppu21I	YACGTR	3 cut(s)	416, 494, 1040
PshAI	GACNNNNGTC	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	623
PspCI	CACGTG	1 cut(s)	1040
PspN4I	GGNNCC	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	149, 889
RsaI	GTAC	2 cut(s)	240, 1048
RsaNI	GTAC	2 cut(s)	239, 1047
RseI	CAYNNNNRTG	2 cut(s)	771, 1042
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	5 cut(s)	189, 209, 539, 654, 944
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	6 cut(s)	149, 358, 487, 607, 694, 889
ScrFI	CCNGG	2 cut(s)	125, 243
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	957
SfuI	TTCGAA	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	771, 1042
Sse9I	AATT	6 cut(s)	281, 341, 384, 536, 946, 975
SsiI	CCGC	1 cut(s)	20
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	123, 241
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	3 cut(s)	418, 496, 1042
TaqI	TCGA	4 cut(s)	289, 382, 588, 682
TasI	AATT	6 cut(s)	281, 341, 384, 536, 946, 975
TatI	WGTACW	1 cut(s)	1046
TfiI	GAWTC	3 cut(s)	679, 707, 824
Tru1I	TTAA	5 cut(s)	189, 209, 539, 654, 944
Tru9I	TTAA	5 cut(s)	189, 209, 539, 654, 944
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	4 cut(s)	53, 221, 416, 914
XagI	CCTNNNNNAGG	1 cut(s)	446
XapI	RAATTY	3 cut(s)	281, 946, 975
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.