Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

66350936 .. 66357042

Gene Structure 6107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG396500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATACAAAGAAGTTATGCGAGTTGACATCAGCTGCTGACAGCCTACAATTGAAGCCTTTGGTTGATCTCACCAGCCGAGCACTTGCACGAATTATTGAAGGAAAAACTCCTGAAGAGATACGGGAGACATTTCATTTACCTGATGATCTCACAGAGGAGGAGAAGTTGGAACCTCTGAGAAACATAACCGATGATCCACGTATCCGGCTTCTTAATCGTCTATATGCAAGAAAGAGGAAAGAATTGAAAGAGAGAGAGAAACTGAAGAATGTTGAGGTGGAGGAGGAGCGTGTTGATCAGCGTTCCGTCGATGATCTCTTGACATTTATAAATGGTGGAAATGGAGATTCAAAGGGAGTTAAAACCAATAAGAATAAGAAGAAAAATCGAAGAAGAAAAGATCTGCCAAAAGATTCTTCAAATAATGTCAATGGAAACCATAATAAGGAATCAGAAGCTCTTTCTTCTGCTTTCCACAATGAATCCCGACCTTCTAGCTCTTGCAACTTGCAAGATTGTACAGCTATTGAGTTTGATGATGGTGATGTTGATGTTGATGATGATTTAGATCCTGCCATGAAGGAGCAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAATTCAGATTGGCCAGAAAGGATGCAGGAAATTTTATCCTTAGGCCAAGAAAGGAGACTTACACCAATAAATATTAATGGAAATGGTTCTGCACGTAGATATACAAGTATGTTCCCTCTTCCCCTCCTGTTTTCCCACTGTATGTTACTTCCTCTGTTGCATATTTTTCATTTTCTTTTCAAAGCTTCTGGAAGAATATTTGCATTCCTTGTGTTCGAGGATATTATTGGGGACTTCTTGAGGCATTTCATATCTTCTTTCTTGGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

299

Amino Acids

34.5

Weight (kDa)

5.65

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1	PF01466	19 - 56	1.2e-12	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AclWI	GGATC	2 cut(s)	191, 566
AcoI	YGGCCR	1 cut(s)	638
AcsI	RAATTY	2 cut(s)	628, 657
AcuI	CTGAAG	2 cut(s)	135, 287
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	6 cut(s)	55, 101, 250, 354, 423, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	403, 435
AluBI	AGCT	6 cut(s)	35, 461, 501, 527, 592, 812
AluI	AGCT	6 cut(s)	35, 461, 501, 527, 592, 812
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	122, 676
AlwI	GGATC	2 cut(s)	191, 566
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	638, 670
ApeKI	GCWGC	2 cut(s)	35, 589
ApoI	RAATTY	2 cut(s)	628, 657
AseI	ATTAAT	1 cut(s)	702
Asp700I	GAANNNNTTC	1 cut(s)	712
AsuHPI	GGTGA	2 cut(s)	64, 557
AxyI	CCTNAGG	1 cut(s)	667
BalI	TGGCCA	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	22, 601
BccI	CCATC	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	122, 676
BfaI	CTAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	36, 590
BlsI	GCNGC	2 cut(s)	37, 591
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	886
BsaAI	YACGTR	2 cut(s)	203, 722
BsaBI	GATNNNNATC	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse21I	CCTNAGG	1 cut(s)	667
Bse8I	GATNNNNATC	1 cut(s)	570
BseGI	GGATG	1 cut(s)	654
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	4 cut(s)	173, 176, 299, 302
BseXI	GCAGC	2 cut(s)	22, 601
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	640, 672
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	122, 676
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	2 cut(s)	640, 672
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
BspANI	GGCC	2 cut(s)	640, 672
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	191, 566
BsrGI	TGTACA	1 cut(s)	521
BssMI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
Bst4CI	ACNGT	1 cut(s)	767
Bst6I	CTCTTC	2 cut(s)	111, 750
BstAUI	TGTACA	1 cut(s)	521
BstBAI	YACGTR	2 cut(s)	203, 722
BstDEI	CTNAG	2 cut(s)	179, 667
BstF5I	GGATG	1 cut(s)	654
BstKTI	GATC	7 cut(s)	70, 151, 199, 301, 319, 406, 574
BstMAI	GTCTC	2 cut(s)	122, 676
BstMBI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
BstV1I	GCAGC	2 cut(s)	22, 601
BstX2I	RGATCY	2 cut(s)	403, 571
BstYI	RGATCY	2 cut(s)	403, 571
Bsu36I	CCTNAGG	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	640, 672
BtsCI	GGATG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	763
CaiI	CAGNNNCTG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	2 cut(s)	179, 667
DpnI	GATC	7 cut(s)	69, 150, 198, 300, 318, 405, 573
DpnII	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
EaeI	YGGCCR	1 cut(s)	638
Eam1104I	CTCTTC	2 cut(s)	111, 750
EarI	CTCTTC	2 cut(s)	111, 750
Eco57I	CTGAAG	2 cut(s)	135, 287
Eco81I	CCTNAGG	1 cut(s)	667
FaeI	CATG	1 cut(s)	583
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	36, 590
FokI	GGATG	1 cut(s)	661
Fsp4HI	GCNGC	2 cut(s)	36, 590
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	2 cut(s)	36, 590
HaeIII	GGCC	2 cut(s)	640, 672
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	583
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	810
HinfI	GANTC	4 cut(s)	350, 416, 452, 485
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	2 cut(s)	64, 557
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	3 cut(s)	180, 457, 634
Hpy188III	TCNNGA	5 cut(s)	113, 322, 489, 816, 865
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	95, 504, 577
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	2 cut(s)	202, 721
HpyCH4V	TGCA	9 cut(s)	89, 230, 507, 514, 617, 652, 719, 787, 830
HpyF3I	CTNAG	2 cut(s)	179, 667
HpySE526I	ACGT	2 cut(s)	202, 721
Hsp92II	CATG	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
LmnI	GCTCC	2 cut(s)	289, 586
Lsp1109I	GCAGC	2 cut(s)	22, 601
LweI	GCATC	1 cut(s)	639
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	202, 721
MaeIII	GTNAC	1 cut(s)	771
MalI	GATC	7 cut(s)	69, 150, 198, 300, 318, 405, 573
MboI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	2 cut(s)	403, 571
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	5 cut(s)	50, 93, 245, 628, 657
MluNI	TGGCCA	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	150
Mox20I	TGGCCA	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	640
MseI	TTAA	5 cut(s)	216, 363, 626, 702, 898
Msp20I	TGGCCA	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	208
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	830
NdeII	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	712
PfeI	GAWTC	4 cut(s)	350, 416, 452, 485
PkrI	GCNGC	2 cut(s)	37, 591
Ppu21I	YACGTR	2 cut(s)	203, 722
PshBI	ATTAAT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	403, 571
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
SaqAI	TTAA	5 cut(s)	216, 363, 626, 702, 898
SatI	GCNGC	2 cut(s)	36, 590
Sau3AI	GATC	7 cut(s)	67, 148, 196, 298, 316, 403, 571
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	865
SmoI	CTYRAG	1 cut(s)	865
Sse9I	AATT	5 cut(s)	50, 93, 245, 628, 657
SspI	AATATT	2 cut(s)	700, 825
SspMI	CTAG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	2 cut(s)	205, 724
TaqI	TCGA	3 cut(s)	312, 391, 843
TasI	AATT	5 cut(s)	50, 93, 245, 628, 657
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	4 cut(s)	350, 416, 452, 485
Tru1I	TTAA	5 cut(s)	216, 363, 626, 702, 898
Tru9I	TTAA	5 cut(s)	216, 363, 626, 702, 898
TscAI	CASTG	1 cut(s)	770
TseI	GCWGC	2 cut(s)	35, 589
TspDTI	ATGAA	5 cut(s)	125, 498, 596, 785, 865
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	770
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	2 cut(s)	628, 657
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.