Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Reverse (-)

28765920 .. 28771097

Gene Structure 5178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G297900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCAGAAGGTGTCATGGCGGTAGTCAAACCTGAGATGAAGTCTTACATCTGGCTTCAAACCGCTGATGGCTCAATCCAACAAGTAGAAGAAGAGGTTGCCATGTTTTGTCCCATGATCTGCCGAGAAATACTGCAGACAGGAATGGGATCTTCCAAAAATTATGCTATATCACTTCCTCAACGAGTTAACCCTGCCATTTTGGGCTTAATACTTGACTATTGCCGGTTTCATCAAGTACCAGGTCGCTCTAATAAGGAACGCAAAACTTTTGACGAGAAATTTATTCGAATGGATACAAAAAAGTTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAATTGAAGCCTTTGGTTGATCTCACTAGCCGAGCACTTGCTCGAATTATTGAAGGAAAAACACCTGAGGAGATACGTGAGACATTCCATTTACCTGATGATCTCACAGAGGAGGAGAAGTTGGAACCTTTGAGAAACATAACTGATGATCCACGTATCCGGCTTCTTAATCGGTTATATGCTAGAAAGAGGAAAGAATTAAAAGAGAGAGAGAAACTGAAGAATGTTGAGGTTGAGGAAGAGCGTGTCGATGAACGTTCAGTCGATGACCTCTTGACTTTTATAAATGGTGGAAGTGGAGAGTCAAAGGGGGTTAAGACCAATAAGAATAAAAAGAAAAATCGGAGAAGAAAAGATCATCCAAAAGACTCTTCAACCAGTGTAAATGGAAGCCATAATAAGGACTTGGATGCTCTTTCTTCTGATTACCATGATGGTGACATTATAAATGTTGAGTCGCCATCGCCCAGTTCTTCAAAGTTGCTAGATTCTACATCAGTTACCTTTTCACCAAAGCTTGAGTTTGATGATTGTGATATTGATGATGATTTAGATCCTGCCATGAAGGAGGAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTAAACTCAGATTGGCCAGAAAGAATGCAGGAAATTTTATCATTGGGCCAAGAAAGGAAGCTTGCACCTATAAATATAAATGGCAATGGCTCTGCGCATAGATATACAAGTTTGGACAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

357

Amino Acids

40.72

Weight (kDa)

5.45

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	623, 785
Acc16I	TGCGCA	1 cut(s)	1041
AciI	CCGC	2 cut(s)	20, 63
AclI	AACGTT	1 cut(s)	595
AclWI	GGATC	3 cut(s)	157, 482, 887
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	2 cut(s)	281, 978
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	739
AgsI	TTSAA	5 cut(s)	59, 346, 392, 714, 816
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	3 cut(s)	856, 913, 1006
AluI	AGCT	3 cut(s)	856, 913, 1006
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	3 cut(s)	157, 482, 887
AoxI	GGCC	2 cut(s)	959, 991
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	2 cut(s)	281, 978
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	991
AsuHPI	GGTGA	2 cut(s)	788, 840
AsuII	TTCGAA	1 cut(s)	289
AxyI	CCTNAGG	1 cut(s)	405
BalI	TGGCCA	1 cut(s)	961
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	3 cut(s)	62, 767, 808
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	2 cut(s)	289, 506
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	3 cut(s)	366, 522, 824
BfmI	CTRYAG	1 cut(s)	134
BfuI	GTATCC	2 cut(s)	289, 506
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	991
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	1 cut(s)	739
BmuI	ACTGGG	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	878
BsaAI	YACGTR	2 cut(s)	416, 494
BsaBI	GATNNNNATC	1 cut(s)	891
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	717, 807
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	1036
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	697, 754
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	1 cut(s)	1036
BseMII	CTCAG	3 cut(s)	24, 396, 966
BseNI	ACTGG	2 cut(s)	717, 807
BseRI	GAGGAG	4 cut(s)	422, 464, 467, 923
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	2 cut(s)	961, 993
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	226, 499
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	975
BsnI	GGCC	2 cut(s)	961, 993
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
BspACI	CCGC	2 cut(s)	20, 63
BspANI	GGCC	2 cut(s)	961, 993
BspCNI	CTCAG	3 cut(s)	25, 397, 965
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	3 cut(s)	157, 482, 887
BspQI	GCTCTTC	1 cut(s)	573
BspT104I	TTCGAA	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	1036
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	717, 807
BssAI	RCCGGY	1 cut(s)	225
BssMI	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	3 cut(s)	87, 573, 715
BstBAI	YACGTR	2 cut(s)	416, 494
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	1008
BstDEI	CTNAG	3 cut(s)	33, 405, 952
BstF5I	GGATG	2 cut(s)	697, 754
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	7 cut(s)	120, 152, 361, 442, 490, 697, 895
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	149, 892
BstYI	RGATCY	2 cut(s)	149, 892
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	2 cut(s)	289, 506
BsuRI	GGCC	2 cut(s)	961, 993
BtgZI	GCGATG	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	697, 754
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	1008
CfoI	GCGC	1 cut(s)	1042
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	991
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	5 cut(s)	16, 103, 115, 770, 901
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	3 cut(s)	33, 405, 952
DpnI	GATC	7 cut(s)	119, 151, 360, 441, 489, 696, 894
DpnII	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
EaeI	YGGCCR	1 cut(s)	959
Eam1104I	CTCTTC	3 cut(s)	87, 573, 715
EarI	CTCTTC	3 cut(s)	87, 573, 715
Eco57I	CTGAAG	1 cut(s)	578
Eco81I	CCTNAGG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	5 cut(s)	19, 106, 118, 773, 904
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	15, 102, 114, 769, 900
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	684, 761
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	366, 522, 824
FspI	TGCGCA	1 cut(s)	1041
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	961, 993
HapII	CCGG	2 cut(s)	226, 499
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	5 cut(s)	19, 106, 118, 773, 904
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HincII	GTYRAC	2 cut(s)	190, 318
HindII	GTYRAC	2 cut(s)	190, 318
HindIII	AAGCTT	2 cut(s)	854, 1004
HinfI	GANTC	4 cut(s)	641, 707, 794, 827
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	226, 499
HphI	GGTGA	2 cut(s)	788, 840
Hpy166II	GTNNAC	2 cut(s)	190, 318
Hpy188I	TCNGA	4 cut(s)	7, 684, 763, 955
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	2 cut(s)	190, 318
HpyAV	CCTTC	2 cut(s)	386, 898
HpyCH4IV	ACGT	3 cut(s)	415, 493, 595
HpyCH4V	TGCA	4 cut(s)	136, 938, 973, 1010
HpyF3I	CTNAG	3 cut(s)	33, 405, 952
HpySE526I	ACGT	3 cut(s)	415, 493, 595
Hsp92II	CATG	5 cut(s)	19, 106, 118, 773, 904
HspAI	GCGC	1 cut(s)	1040
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	739
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	3 cut(s)	366, 522, 824
MaeII	ACGT	3 cut(s)	415, 493, 595
MaeIII	GTNAC	2 cut(s)	776, 838
MalI	GATC	7 cut(s)	119, 151, 360, 441, 489, 696, 894
MboI	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	2 cut(s)	149, 892
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	961
MluCI	AATT	6 cut(s)	160, 281, 341, 384, 536, 978
MluNI	TGGCCA	1 cut(s)	961
MlyI	GAGTC	3 cut(s)	650, 701, 803
MmeI	TCCRAC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	961
MscI	TGGCCA	1 cut(s)	961
MseI	TTAA	6 cut(s)	189, 209, 507, 539, 654, 947
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	961
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	226, 499
MspR9I	CCNGG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	975
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
NlaIII	CATG	5 cut(s)	19, 106, 118, 773, 904
NlaIV	GGNNCC	1 cut(s)	465
NmeAIII	GCCGAG	2 cut(s)	149, 395
NmuCI	GTSAC	1 cut(s)	776
NsbI	TGCGCA	1 cut(s)	1041
NspV	TTCGAA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	573
PctI	GAATGC	1 cut(s)	975
PfeI	GAWTC	1 cut(s)	827
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	3 cut(s)	649, 701, 802
PpsI	GAGTC	3 cut(s)	649, 701, 802
Ppu21I	YACGTR	2 cut(s)	416, 494
PsiI	TTATAA	2 cut(s)	623, 785
Psp1406I	AACGTT	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	991
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	149, 892
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	6 cut(s)	189, 209, 507, 539, 654, 947
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	7 cut(s)	117, 149, 358, 439, 487, 694, 892
Sau96I	GGNCC	1 cut(s)	991
SchI	GAGTC	3 cut(s)	650, 701, 803
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	376
SexAI	ACCWGGT	1 cut(s)	241
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	6 cut(s)	160, 281, 341, 384, 536, 978
SsiI	CCGC	2 cut(s)	20, 63
SspMI	CTAG	3 cut(s)	366, 522, 824
StyD4I	CCNGG	1 cut(s)	241
TaiI	ACGT	3 cut(s)	418, 496, 598
TaqI	TCGA	4 cut(s)	289, 382, 588, 603
TasI	AATT	6 cut(s)	160, 281, 341, 384, 536, 978
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	6 cut(s)	189, 209, 507, 539, 654, 947
Tru9I	TTAA	6 cut(s)	189, 209, 507, 539, 654, 947
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	4 cut(s)	53, 221, 606, 917
TspRI	CASTG	1 cut(s)	724
XapI	RAATTY	2 cut(s)	281, 978
XspI	CTAG	3 cut(s)	366, 522, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.