Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G12650 |
| fragaria_vesca | FvH4_6g40160 FvH4_6g40160 FvH4_6g40160 FvH4_6g40160 |
| malus_domestica | MD09G1134700.v1.1 MD17G1123600.v1.1 MD17G1123700.v1.1 |
| prunus_persica | Prupe.3G192000_v2.0.a1 |
| pyrus_communis | pycom09g05580 pycom17g11510 |
| rosa_chinensis | RchiOBHm_Chr2g0155171 |
| rosa_laevigata | RLG00000020823 |
| rosa_multiflora | Rmu_sc0002048.1_g000049 |
| rosa_roxburghii | Rroxscaffold_2G00093900 |
| rosa_rugosa | Rorug02G0445700 Rorug02G0445700 |
| rosa_samantha | Rh2AG511900 Rh2BG522700 Rh2CG496900 Rh2DG532400 |
| rosa_wichuraiana | Rw2G042060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 66 |
| Acc36I | ACCTGC | 1 cut(s) | 1836 |
| AccII | CGCG | 1 cut(s) | 1531 |
| AciI | CCGC | 1 cut(s) | 279 |
| AclWI | GGATC | 1 cut(s) | 394 |
| AcoI | YGGCCR | 1 cut(s) | 827 |
| AcsI | RAATTY | 2 cut(s) | 892, 1521 |
| AcuI | CTGAAG | 6 cut(s) | 163, 234, 542, 872, 1716, 1755 |
| AfaI | GTAC | 7 cut(s) | 325, 479, 710, 1344, 1375, 1407, 1802 |
| AfeI | AGCGCT | 1 cut(s) | 232 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 215, 442, 1278 |
| AgsI | TTSAA | 4 cut(s) | 749, 892, 1071, 1487 |
| AjnI | CCWGG | 2 cut(s) | 1292, 1315 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1086, 1118 |
| Alw21I | GWGCWC | 4 cut(s) | 348, 876, 1020, 1384 |
| Alw26I | GTCTC | 3 cut(s) | 158, 197, 759 |
| Alw44I | GTGCAC | 1 cut(s) | 872 |
| AlwI | GGATC | 1 cut(s) | 394 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1778 |
| Ama87I | CYCGRG | 1 cut(s) | 242 |
| Aor51HI | AGCGCT | 1 cut(s) | 232 |
| AoxI | GGCC | 2 cut(s) | 827, 1844 |
| ApaLI | GTGCAC | 1 cut(s) | 872 |
| ApeKI | GCWGC | 4 cut(s) | 172, 358, 1142, 1365 |
| ApoI | RAATTY | 2 cut(s) | 892, 1521 |
| AseI | ATTAAT | 1 cut(s) | 899 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1760 |
| AspLEI | GCGC | 5 cut(s) | 67, 124, 233, 1531, 1533 |
| AspS9I | GGNCC | 2 cut(s) | 590, 1844 |
| AsuC2I | CCSGG | 2 cut(s) | 93, 594 |
| AsuHPI | GGTGA | 3 cut(s) | 509, 916, 1705 |
| AvaI | CYCGRG | 1 cut(s) | 242 |
| AvaII | GGWCC | 1 cut(s) | 590 |
| AxyI | CCTNAGG | 1 cut(s) | 944 |
| BaeGI | GKGCMC | 1 cut(s) | 876 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 307, 340, 700, 733 |
| BalI | TGGCCA | 1 cut(s) | 829 |
| BanII | GRGCYC | 2 cut(s) | 868, 1020 |
| BauI | CACGAG | 4 cut(s) | 542, 867, 1170, 1470 |
| Bbv12I | GWGCWC | 4 cut(s) | 348, 876, 1020, 1384 |
| BbvCI | CCTCAGC | 1 cut(s) | 1476 |
| BbvI | GCAGC | 4 cut(s) | 159, 345, 1154, 1377 |
| BccI | CCATC | 7 cut(s) | 819, 838, 850, 1091, 1111, 1549, 1814 |
| BciT130I | CCWGG | 2 cut(s) | 1294, 1317 |
| BciVI | GTATCC | 1 cut(s) | 728 |
| BclI | TGATCA | 2 cut(s) | 1194, 1881 |
| BcnI | CCSGG | 2 cut(s) | 93, 594 |
| BcoDI | GTCTC | 3 cut(s) | 158, 197, 759 |
| BfaI | CTAG | 1 cut(s) | 1617 |
| BfmI | CTRYAG | 3 cut(s) | 159, 187, 1829 |
| BfoI | RGCGCY | 1 cut(s) | 234 |
| BfuAI | ACCTGC | 1 cut(s) | 1836 |
| BfuI | GTATCC | 1 cut(s) | 728 |
| BisI | GCNGC | 4 cut(s) | 173, 359, 1143, 1366 |
| BlsI | GCNGC | 4 cut(s) | 174, 360, 1144, 1367 |
| BmcAI | AGTACT | 1 cut(s) | 1375 |
| Bme1390I | CCNGG | 4 cut(s) | 93, 594, 1294, 1317 |
| Bme18I | GGWCC | 1 cut(s) | 590 |
| BmeT110I | CYCGRG | 1 cut(s) | 242 |
| BmgT120I | GGNCC | 2 cut(s) | 590, 1844 |
| BmiI | GGNNCC | 1 cut(s) | 1585 |
| BmrFI | CCNGG | 4 cut(s) | 93, 594, 1294, 1317 |
| BmrI | ACTGGG | 2 cut(s) | 471, 588 |
| BmsI | GCATC | 4 cut(s) | 635, 832, 1629, 1732 |
| BmuI | ACTGGG | 2 cut(s) | 471, 588 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1004, 1036 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1476 |
| BpuEI | CTTGAG | 1 cut(s) | 981 |
| BpuMI | CCSGG | 2 cut(s) | 93, 594 |
| Bsa29I | ATCGAT | 1 cut(s) | 1974 |
| BsaBI | GATNNNNATC | 3 cut(s) | 384, 829, 846 |
| BsaJI | CCNNGG | 3 cut(s) | 1213, 1514, 1867 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1086, 1116 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 215, 442, 1278 |
| Bse118I | RCCGGY | 2 cut(s) | 415, 1226 |
| Bse1I | ACTGG | 6 cut(s) | 466, 583, 881, 987, 1381, 1915 |
| Bse21I | CCTNAGG | 1 cut(s) | 944 |
| Bse8I | GATNNNNATC | 3 cut(s) | 384, 829, 846 |
| BseBI | CCWGG | 2 cut(s) | 1294, 1317 |
| BseCI | ATCGAT | 1 cut(s) | 1974 |
| BseDI | CCNNGG | 3 cut(s) | 1213, 1514, 1867 |
| BseGI | GGATG | 4 cut(s) | 847, 1122, 1608, 1961 |
| BseJI | GATNNNNATC | 3 cut(s) | 384, 829, 846 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 215, 442, 1278 |
| BseMII | CTCAG | 6 cut(s) | 159, 225, 333, 753, 1016, 1467 |
| BseNI | ACTGG | 6 cut(s) | 466, 583, 881, 987, 1381, 1915 |
| BsePI | GCGCGC | 1 cut(s) | 1529 |
| BseRI | GAGGAG | 3 cut(s) | 242, 970, 1028 |
| BseSI | GKGCMC | 1 cut(s) | 876 |
| BseXI | GCAGC | 4 cut(s) | 159, 345, 1154, 1377 |
| BsgI | GTGCAG | 1 cut(s) | 584 |
| Bsh1236I | CGCG | 1 cut(s) | 1531 |
| BshFI | GGCC | 2 cut(s) | 829, 1846 |
| BshVI | ATCGAT | 1 cut(s) | 1974 |
| BsiHKAI | GWGCWC | 4 cut(s) | 348, 876, 1020, 1384 |
| BsiHKCI | CYCGRG | 1 cut(s) | 242 |
| BsiSI | CCGG | 4 cut(s) | 92, 416, 593, 1227 |
| BslFI | GGGAC | 3 cut(s) | 589, 1399, 1582 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 215, 442, 1278 |
| BsmAI | GTCTC | 3 cut(s) | 158, 197, 759 |
| BsmFI | GGGAC | 3 cut(s) | 589, 1399, 1582 |
| BsmI | GAATGC | 1 cut(s) | 1182 |
| BsnI | GGCC | 2 cut(s) | 829, 1846 |
| BsoBI | CYCGRG | 1 cut(s) | 242 |
| Bsp1286I | GDGCHC | 5 cut(s) | 348, 868, 876, 1020, 1384 |
| Bsp143I | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| BspACI | CCGC | 1 cut(s) | 279 |
| BspANI | GGCC | 2 cut(s) | 829, 1846 |
| BspCNI | CTCAG | 6 cut(s) | 160, 226, 334, 752, 1015, 1468 |
| BspDI | ATCGAT | 1 cut(s) | 1974 |
| BspFNI | CGCG | 1 cut(s) | 1531 |
| BspLI | GGNNCC | 1 cut(s) | 1585 |
| BspMAI | CTGCAG | 1 cut(s) | 1833 |
| BspMI | ACCTGC | 1 cut(s) | 1836 |
| BspPI | GGATC | 1 cut(s) | 394 |
| BspQI | GCTCTTC | 1 cut(s) | 1389 |
| BsrFI | RCCGGY | 2 cut(s) | 415, 1226 |
| BsrI | ACTGG | 6 cut(s) | 466, 583, 881, 987, 1381, 1915 |
| BssAI | RCCGGY | 2 cut(s) | 415, 1226 |
| BssECI | CCNNGG | 3 cut(s) | 1213, 1514, 1867 |
| BssHII | GCGCGC | 1 cut(s) | 1529 |
| BssMI | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| BssSI | CACGAG | 4 cut(s) | 542, 867, 1170, 1470 |
| BssT1I | CCWWGG | 3 cut(s) | 1213, 1514, 1867 |
| Bst2BI | CACGAG | 4 cut(s) | 542, 867, 1170, 1470 |
| Bst2UI | CCWGG | 2 cut(s) | 1294, 1317 |
| Bst4CI | ACNGT | 4 cut(s) | 191, 494, 952, 1342 |
| Bst6I | CTCTTC | 4 cut(s) | 1389, 1452, 1595, 1961 |
| BstC8I | GCNNGC | 4 cut(s) | 417, 1164, 1306, 1531 |
| BstDEI | CTNAG | 8 cut(s) | 168, 234, 342, 739, 944, 1002, 1462, 1476 |
| BstF5I | GGATG | 4 cut(s) | 847, 1122, 1608, 1961 |
| BstFNI | CGCG | 1 cut(s) | 1531 |
| BstH2I | RGCGCY | 1 cut(s) | 234 |
| BstHHI | GCGC | 5 cut(s) | 67, 124, 233, 1531, 1533 |
| BstKTI | GATC | 8 cut(s) | 270, 382, 402, 909, 1197, 1286, 1884, 1974 |
| BstMAI | GTCTC | 3 cut(s) | 158, 197, 759 |
| BstMBI | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 1666, 1766, 1920 |
| BstNI | CCWGG | 2 cut(s) | 1294, 1317 |
| BstNSI | RCATGY | 3 cut(s) | 106, 1308, 1723 |
| BstSCI | CCNGG | 4 cut(s) | 91, 592, 1292, 1315 |
| BstSFI | CTRYAG | 3 cut(s) | 159, 187, 1829 |
| BstSLI | GKGCMC | 1 cut(s) | 876 |
| BstUI | CGCG | 1 cut(s) | 1531 |
| BstV1I | GCAGC | 4 cut(s) | 159, 345, 1154, 1377 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 837 |
| Bsu15I | ATCGAT | 1 cut(s) | 1974 |
| Bsu36I | CCTNAGG | 1 cut(s) | 944 |
| BsuI | GTATCC | 1 cut(s) | 728 |
| BsuRI | GGCC | 2 cut(s) | 829, 1846 |
| BsuTUI | ATCGAT | 1 cut(s) | 1974 |
| BtgZI | GCGATG | 1 cut(s) | 434 |
| BtsCI | GGATG | 4 cut(s) | 847, 1122, 1608, 1961 |
| BtsIMutI | CAGTG | 4 cut(s) | 461, 874, 1440, 1710 |
| BveI | ACCTGC | 1 cut(s) | 1836 |
| Cac8I | GCNNGC | 4 cut(s) | 417, 1164, 1306, 1531 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1778 |
| CfoI | GCGC | 5 cut(s) | 67, 124, 233, 1531, 1533 |
| Cfr10I | RCCGGY | 2 cut(s) | 415, 1226 |
| Cfr13I | GGNCC | 2 cut(s) | 590, 1844 |
| ClaI | ATCGAT | 1 cut(s) | 1974 |
| Csp6I | GTAC | 7 cut(s) | 324, 478, 709, 1343, 1374, 1406, 1801 |
| CviQI | GTAC | 7 cut(s) | 324, 478, 709, 1343, 1374, 1406, 1801 |
| DdeI | CTNAG | 8 cut(s) | 168, 234, 342, 739, 944, 1002, 1462, 1476 |
| DpnI | GATC | 8 cut(s) | 269, 381, 401, 908, 1196, 1285, 1883, 1973 |
| DpnII | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| DraI | TTTAAA | 1 cut(s) | 292 |
| EaeI | YGGCCR | 1 cut(s) | 827 |
| Eam1104I | CTCTTC | 4 cut(s) | 1389, 1452, 1595, 1961 |
| EarI | CTCTTC | 4 cut(s) | 1389, 1452, 1595, 1961 |
| Ecl136II | GAGCTC | 1 cut(s) | 1018 |
| Eco130I | CCWWGG | 3 cut(s) | 1213, 1514, 1867 |
| Eco24I | GRGCYC | 2 cut(s) | 868, 1020 |
| Eco32I | GATATC | 1 cut(s) | 9 |
| Eco47I | GGWCC | 1 cut(s) | 590 |
| Eco47III | AGCGCT | 1 cut(s) | 232 |
| Eco53kI | GAGCTC | 1 cut(s) | 1018 |
| Eco57I | CTGAAG | 6 cut(s) | 163, 234, 542, 872, 1716, 1755 |
| Eco81I | CCTNAGG | 1 cut(s) | 944 |
| Eco88I | CYCGRG | 1 cut(s) | 242 |
| EcoICRI | GAGCTC | 1 cut(s) | 1018 |
| EcoRI | GAATTC | 1 cut(s) | 892 |
| EcoRII | CCWGG | 2 cut(s) | 1292, 1315 |
| EcoRV | GATATC | 1 cut(s) | 9 |
| EcoT14I | CCWWGG | 3 cut(s) | 1213, 1514, 1867 |
| EcoT22I | ATGCAT | 2 cut(s) | 108, 1725 |
| EcoT38I | GRGCYC | 2 cut(s) | 868, 1020 |
| ErhI | CCWWGG | 3 cut(s) | 1213, 1514, 1867 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1748, 1780 |
| FaqI | GGGAC | 3 cut(s) | 589, 1399, 1582 |
| FbaI | TGATCA | 2 cut(s) | 1194, 1881 |
| Fnu4HI | GCNGC | 4 cut(s) | 173, 359, 1143, 1366 |
| FokI | GGATG | 4 cut(s) | 854, 1129, 1595, 1948 |
| FriOI | GRGCYC | 2 cut(s) | 868, 1020 |
| Fsp4HI | GCNGC | 4 cut(s) | 173, 359, 1143, 1366 |
| FspBI | CTAG | 1 cut(s) | 1617 |
| FspI | TGCGCA | 1 cut(s) | 66 |
| GlaI | GCGC | 5 cut(s) | 66, 123, 232, 1530, 1532 |
| GluI | GCNGC | 4 cut(s) | 173, 359, 1143, 1366 |
| HaeII | RGCGCY | 1 cut(s) | 234 |
| HaeIII | GGCC | 2 cut(s) | 829, 1846 |
| HapII | CCGG | 4 cut(s) | 92, 416, 593, 1227 |
| HhaI | GCGC | 5 cut(s) | 67, 124, 233, 1531, 1533 |
| Hin6I | GCGC | 5 cut(s) | 65, 122, 231, 1529, 1531 |
| HinP1I | GCGC | 5 cut(s) | 65, 122, 231, 1529, 1531 |
| HincII | GTYRAC | 3 cut(s) | 145, 394, 1908 |
| HindII | GTYRAC | 3 cut(s) | 145, 394, 1908 |
| HindIII | AAGCTT | 2 cut(s) | 1031, 1073 |
| HinfI | GANTC | 8 cut(s) | 13, 238, 451, 538, 992, 1064, 1320, 1510 |
| HpaI | GTTAAC | 1 cut(s) | 145 |
| HpaII | CCGG | 4 cut(s) | 92, 416, 593, 1227 |
| HphI | GGTGA | 3 cut(s) | 509, 916, 1705 |
| Hpy166II | GTNNAC | 7 cut(s) | 145, 394, 459, 480, 658, 874, 1908 |
| Hpy188I | TCNGA | 9 cut(s) | 18, 607, 742, 852, 1005, 1055, 1107, 1273, 1454 |
| Hpy188III | TCNNGA | 5 cut(s) | 223, 271, 542, 889, 1170 |
| Hpy8I | GTNNAC | 7 cut(s) | 145, 394, 459, 480, 658, 874, 1908 |
| Hpy99I | CGWCG | 1 cut(s) | 353 |
| HpyAV | CCTTC | 6 cut(s) | 187, 209, 545, 581, 1268, 1750 |
| HpyCH4III | ACNGT | 4 cut(s) | 191, 494, 952, 1342 |
| HpyCH4IV | ACGT | 1 cut(s) | 351 |
| HpyCH4V | TGCA | 9 cut(s) | 106, 204, 565, 874, 1142, 1428, 1723, 1831, 1895 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 1666, 1766, 1920 |
| HpyF3I | CTNAG | 8 cut(s) | 168, 234, 342, 739, 944, 1002, 1462, 1476 |
| HpySE526I | ACGT | 1 cut(s) | 351 |
| HspAI | GCGC | 5 cut(s) | 65, 122, 231, 1529, 1531 |
| KroI | GCCGGC | 1 cut(s) | 415 |
| KroNI | GCCGGC | 1 cut(s) | 417 |
| Ksp22I | TGATCA | 2 cut(s) | 1194, 1881 |
| KspAI | GTTAAC | 1 cut(s) | 145 |
| Kzo9I | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| LguI | GCTCTTC | 1 cut(s) | 1389 |
| LmnI | GCTCC | 2 cut(s) | 769, 1015 |
| Lsp1109I | GCAGC | 4 cut(s) | 159, 345, 1154, 1377 |
| LweI | GCATC | 4 cut(s) | 635, 832, 1629, 1732 |
| MaeI | CTAG | 1 cut(s) | 1617 |
| MaeII | ACGT | 1 cut(s) | 351 |
| MaeIII | GTNAC | 3 cut(s) | 22, 133, 1126 |
| MalI | GATC | 8 cut(s) | 269, 381, 401, 908, 1196, 1285, 1883, 1973 |
| MboI | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| MfeI | CAATTG | 1 cut(s) | 1917 |
| MhlI | GDGCHC | 5 cut(s) | 348, 868, 876, 1020, 1384 |
| MlsI | TGGCCA | 1 cut(s) | 829 |
| MluCI | AATT | 8 cut(s) | 409, 570, 730, 892, 1482, 1521, 1810, 1917 |
| MluNI | TGGCCA | 1 cut(s) | 829 |
| MmeI | TCCRAC | 1 cut(s) | 1072 |
| Mox20I | TGGCCA | 1 cut(s) | 829 |
| Mph1103I | ATGCAT | 2 cut(s) | 108, 1725 |
| MroNI | GCCGGC | 1 cut(s) | 415 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1760 |
| MscI | TGGCCA | 1 cut(s) | 829 |
| MseI | TTAA | 8 cut(s) | 144, 152, 291, 447, 672, 899, 965, 1978 |
| MslI | CAYNNNNRTG | 5 cut(s) | 546, 835, 1433, 1718, 1728 |
| Msp20I | TGGCCA | 1 cut(s) | 829 |
| MspA1I | CMGCKG | 1 cut(s) | 72 |
| MspI | CCGG | 4 cut(s) | 92, 416, 593, 1227 |
| MspR9I | CCNGG | 4 cut(s) | 93, 594, 1294, 1317 |
| MunI | CAATTG | 1 cut(s) | 1917 |
| Mva1269I | GAATGC | 1 cut(s) | 1182 |
| MvaI | CCWGG | 2 cut(s) | 1294, 1317 |
| MvnI | CGCG | 1 cut(s) | 1531 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 1666, 1766, 1920 |
| NaeI | GCCGGC | 1 cut(s) | 417 |
| NciI | CCSGG | 2 cut(s) | 93, 594 |
| NdeII | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| NgoMIV | GCCGGC | 1 cut(s) | 415 |
| NlaIV | GGNNCC | 1 cut(s) | 1585 |
| NmuCI | GTSAC | 2 cut(s) | 22, 1126 |
| NsbI | TGCGCA | 1 cut(s) | 66 |
| NsiI | ATGCAT | 2 cut(s) | 108, 1725 |
| NspI | RCATGY | 3 cut(s) | 106, 1308, 1723 |
| PaeI | GCATGC | 1 cut(s) | 1308 |
| PauI | GCGCGC | 1 cut(s) | 1529 |
| PciSI | GCTCTTC | 1 cut(s) | 1389 |
| PctI | GAATGC | 1 cut(s) | 1182 |
| PdiI | GCCGGC | 1 cut(s) | 417 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1760 |
| PfeI | GAWTC | 8 cut(s) | 13, 238, 451, 538, 992, 1064, 1320, 1510 |
| PfoI | TCCNGGA | 1 cut(s) | 1315 |
| PkrI | GCNGC | 4 cut(s) | 174, 360, 1144, 1367 |
| PshBI | ATTAAT | 1 cut(s) | 899 |
| Psp124BI | GAGCTC | 1 cut(s) | 1020 |
| Psp6I | CCWGG | 2 cut(s) | 1292, 1315 |
| PspGI | CCWGG | 2 cut(s) | 1292, 1315 |
| PspN4I | GGNNCC | 1 cut(s) | 1585 |
| PspPI | GGNCC | 2 cut(s) | 590, 1844 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 266, 298 |
| PstI | CTGCAG | 1 cut(s) | 1833 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1778 |
| PteI | GCGCGC | 1 cut(s) | 1529 |
| PvuII | CAGCTG | 1 cut(s) | 72 |
| RsaI | GTAC | 7 cut(s) | 325, 479, 710, 1344, 1375, 1407, 1802 |
| RsaNI | GTAC | 7 cut(s) | 324, 478, 709, 1343, 1374, 1406, 1801 |
| RseI | CAYNNNNRTG | 5 cut(s) | 546, 835, 1433, 1718, 1728 |
| SacI | GAGCTC | 1 cut(s) | 1020 |
| SapI | GCTCTTC | 1 cut(s) | 1389 |
| SaqAI | TTAA | 8 cut(s) | 144, 152, 291, 447, 672, 899, 965, 1978 |
| SatI | GCNGC | 4 cut(s) | 173, 359, 1143, 1366 |
| Sau3AI | GATC | 8 cut(s) | 267, 379, 399, 906, 1194, 1283, 1881, 1971 |
| Sau96I | GGNCC | 2 cut(s) | 590, 1844 |
| ScaI | AGTACT | 1 cut(s) | 1375 |
| ScrFI | CCNGG | 4 cut(s) | 93, 594, 1294, 1317 |
| SduI | GDGCHC | 5 cut(s) | 348, 868, 876, 1020, 1384 |
| SfaNI | GCATC | 4 cut(s) | 635, 832, 1629, 1732 |
| SfcI | CTRYAG | 3 cut(s) | 159, 187, 1829 |
| SinI | GGWCC | 1 cut(s) | 590 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 546, 835, 1433, 1718, 1728 |
| SmlI | CTYRAG | 1 cut(s) | 996 |
| SmoI | CTYRAG | 1 cut(s) | 996 |
| SphI | GCATGC | 1 cut(s) | 1308 |
| Sse9I | AATT | 8 cut(s) | 409, 570, 730, 892, 1482, 1521, 1810, 1917 |
| SsiI | CCGC | 1 cut(s) | 279 |
| SspMI | CTAG | 1 cut(s) | 1617 |
| SstI | GAGCTC | 1 cut(s) | 1020 |
| StyD4I | CCNGG | 4 cut(s) | 91, 592, 1292, 1315 |
| StyI | CCWWGG | 3 cut(s) | 1213, 1514, 1867 |
| TaaI | ACNGT | 4 cut(s) | 191, 494, 952, 1342 |
| TaiI | ACGT | 1 cut(s) | 354 |
| TaqI | TCGA | 4 cut(s) | 11, 270, 1596, 1974 |
| TasI | AATT | 8 cut(s) | 409, 570, 730, 892, 1482, 1521, 1810, 1917 |
| TatI | WGTACW | 3 cut(s) | 1373, 1405, 1800 |
| TfiI | GAWTC | 8 cut(s) | 13, 238, 451, 538, 992, 1064, 1320, 1510 |
| Tru1I | TTAA | 8 cut(s) | 144, 152, 291, 447, 672, 899, 965, 1978 |
| Tru9I | TTAA | 8 cut(s) | 144, 152, 291, 447, 672, 899, 965, 1978 |
| TscAI | CASTG | 4 cut(s) | 461, 881, 1440, 1710 |
| TseFI | GTSAC | 2 cut(s) | 22, 1126 |
| TseI | GCWGC | 4 cut(s) | 172, 358, 1142, 1365 |
| Tsp45I | GTSAC | 2 cut(s) | 22, 1126 |
| TspGWI | ACGGA | 2 cut(s) | 1232, 1954 |
| TspRI | CASTG | 4 cut(s) | 461, 881, 1440, 1710 |
| VneI | GTGCAC | 1 cut(s) | 872 |
| VpaK11BI | GGWCC | 1 cut(s) | 590 |
| VspI | ATTAAT | 1 cut(s) | 899 |
| XapI | RAATTY | 2 cut(s) | 892, 1521 |
| XceI | RCATGY | 3 cut(s) | 106, 1308, 1723 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1813 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1760 |
| XspI | CTAG | 1 cut(s) | 1617 |
| ZrmI | AGTACT | 1 cut(s) | 1375 |
| Zsp2I | ATGCAT | 2 cut(s) | 108, 1725 |