Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Reverse (-)

57216272 .. 57219013

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0445700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTTGTTTCTAGATTTTCGGGCCTCGGCAGGCAGATGATCAAGTATCTCAGAAAAGGTCCATTGACATTTTCACCAAAGGCAGGAAACTTATGTGCAAGTTACAATTATTTTTCCCATACTTTGACGCCTCGTACTTTTTCTACAACAACTGCTCATGAGGAAGGGAACAAACAAATAGAAGAAATATCTGTGATGTTTGTTGATAACGATGGGGAGAAGCATGTTAAAGTTCCTGTTGGAAAGTCTATACTAGAAGCTGCTCATGAAAATGATATTGAACTTGAAGGAGCATGTGAAGGATCCTGTGCTTGTTCTACATGCCATGTGATTGTGAGAGATTTGGAGTACTACAATAAACTGGAAGATCCCACTGATGAGGAAAATGACATGCTGGACCTTGCATTCGGGCTCACAGAGACGTCTCGTCTGGGTTGTCAAGTGATTGCAACACCTGAACTCGATGGAATATGCCTTGAACTGCCCGCGGCCACGCGGAACTTTGCTGTCGACAAGTATGCCAAAGCCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

177

Amino Acids

19.52

Weight (kDa)

4.93

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	69 - 151	9.3e-13	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	2 cut(s)	488, 496
AciI	CCGC	3 cut(s)	486, 488, 496
AclWI	GGATC	3 cut(s)	297, 310, 362
AcoI	YGGCCR	1 cut(s)	489
AcyI	GRCGYC	2 cut(s)	128, 422
AfaI	GTAC	2 cut(s)	136, 350
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	281, 287, 479
AhdI	GACNNNNNGTC	1 cut(s)	426
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	413, 429
AlwI	GGATC	3 cut(s)	297, 310, 362
AoxI	GGCC	2 cut(s)	22, 489
ApeKI	GCWGC	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspS9I	GGNCC	3 cut(s)	22, 59, 397
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	2 cut(s)	59, 397
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	2 cut(s)	206, 458
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	413, 429
BfaI	CTAG	3 cut(s)	12, 254, 532
BisI	GCNGC	2 cut(s)	261, 489
BlsI	GCNGC	2 cut(s)	262, 490
BmcAI	AGTACT	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	59, 397
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	22, 59, 397
BmiI	GGNNCC	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	128, 422
BsaJI	CCNNGG	2 cut(s)	25, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	25, 486
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	247
Bsh1236I	CGCG	2 cut(s)	488, 496
BshFI	GGCC	2 cut(s)	24, 491
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	413, 429
BsmBI	CGTCTC	2 cut(s)	413, 429
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	24, 491
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	39, 302, 367
BspACI	CCGC	3 cut(s)	486, 488, 496
BspANI	GGCC	2 cut(s)	24, 491
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	2 cut(s)	488, 496
BspHI	TCATGA	2 cut(s)	157, 265
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	297, 310, 362
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	25, 486
BssMI	GATC	3 cut(s)	39, 302, 367
BssNI	GRCGYC	2 cut(s)	128, 422
BstACI	GRCGYC	2 cut(s)	128, 422
BstC8I	GCNNGC	2 cut(s)	32, 486
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	2 cut(s)	488, 496
BstKTI	GATC	3 cut(s)	42, 305, 370
BstMAI	GTCTC	2 cut(s)	413, 429
BstMBI	GATC	3 cut(s)	39, 302, 367
BstNSI	RCATGY	4 cut(s)	227, 297, 324, 394
BstUI	CGCG	2 cut(s)	488, 496
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	302, 367
BstYI	RGATCY	2 cut(s)	302, 367
BsuRI	GGCC	2 cut(s)	24, 491
BtgI	CCRYGG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	32, 486
CciI	TCATGA	2 cut(s)	157, 265
Cfr13I	GGNCC	3 cut(s)	22, 59, 397
Cfr42I	CCGCGG	1 cut(s)	489
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	135, 349
CviAII	CATG	7 cut(s)	158, 224, 266, 294, 321, 326, 391
CviJI	RGCY	5 cut(s)	24, 260, 412, 491, 527
CviKI_1	RGCY	5 cut(s)	24, 260, 412, 491, 527
CviQI	GTAC	2 cut(s)	135, 349
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	41, 304, 369
DpnII	GATC	3 cut(s)	39, 302, 367
DriI	GACNNNNNGTC	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	489
Eam1105I	GACNNNNNGTC	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	59, 397
EcoT38I	GRGCYC	1 cut(s)	414
Esp3I	CGTCTC	2 cut(s)	413, 429
FaeI	CATG	7 cut(s)	161, 227, 269, 297, 324, 329, 394
FatI	CATG	7 cut(s)	157, 223, 265, 293, 320, 325, 390
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	261, 489
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	261, 489
FspBI	CTAG	3 cut(s)	12, 254, 532
GluI	GCNGC	2 cut(s)	261, 489
HaeIII	GGCC	2 cut(s)	24, 491
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	2 cut(s)	128, 422
Hin1II	CATG	7 cut(s)	161, 227, 269, 297, 324, 329, 394
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	12, 158, 266
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	3 cut(s)	158, 281, 293
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	3 cut(s)	98, 404, 449
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	422
Hsp92I	GRCGYC	2 cut(s)	128, 422
Hsp92II	CATG	7 cut(s)	161, 227, 269, 297, 324, 329, 394
Ksp22I	TGATCA	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	39, 302, 367
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	8 cut(s)	16, 69, 249, 319, 347, 380, 416, 468
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	3 cut(s)	12, 254, 532
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	41, 304, 369
MboI	GATC	3 cut(s)	39, 302, 367
MboII	GAAGA	2 cut(s)	194, 377
MflI	RGATCY	2 cut(s)	302, 367
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	4 cut(s)	35, 141, 154, 373
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	404
MvnI	CGCG	2 cut(s)	488, 496
NdeII	GATC	3 cut(s)	39, 302, 367
NlaIII	CATG	7 cut(s)	161, 227, 269, 297, 324, 329, 394
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	6
NspI	RCATGY	4 cut(s)	227, 297, 324, 394
PagI	TCATGA	2 cut(s)	157, 265
PctI	GAATGC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	262, 490
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	3 cut(s)	22, 59, 397
PsuI	RGATCY	2 cut(s)	302, 367
RsaI	GTAC	2 cut(s)	136, 350
RsaNI	GTAC	2 cut(s)	135, 349
RseI	CAYNNNNRTG	1 cut(s)	270
SacII	CCGCGG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	261, 489
Sau3AI	GATC	3 cut(s)	39, 302, 367
Sau96I	GGNCC	3 cut(s)	22, 59, 397
ScaI	AGTACT	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	6 cut(s)	61, 262, 402, 425, 457, 533
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	59, 397
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	486, 488, 496
SspMI	CTAG	3 cut(s)	12, 254, 532
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	2 cut(s)	462, 510
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	491
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	59, 397
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	4 cut(s)	227, 297, 324, 394
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	3 cut(s)	12, 254, 532
ZraI	GACGTC	1 cut(s)	423
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.