Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Forward (+)

76234714 .. 76236131

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG532300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAGCACAAGCCCTAGTGTCGTCGTCGTCGTTAACCGCCTCGAAGGAGGTTGCGAGGAACCTGCTAGGAGGAAGATCAGCTCAGTCTCCATTTGGGGTGAGGAAATCAGCTTCCTTTGTTGTAAAGGCAGCCTCTACTCCCCCTGTTAAGCAAGGAGCAGACAGACAGTTGTGGTTTGCATCAAAGCAGAGCCTTTCTTACTTGGATGGCAGTCTTCCAGGTGACTATGGATTCGACCCATTGGGCCTCTCAGACCCAGAAGGCACCGGAGGGTTCATCGAACCAAGATGGTTAGCTTATGGTGAGGTCATCAATGGACGTTATGCCATGTTGGGTGCAATCGGTGCCATTGCACCCGAGATCTTGGGGAAACTTGGCCTGATTCCAGCTGAAACAGCTCTCCCTTGGTTCCAAACCGGTGTGATTCCCCCGGCCGGAACCTACAACTATTGGGCCGACCCTTACACCCTATTCGTCTTCGAGCTTGCCTTAATGGGCTTTGCCGAGCACAGACGTTTCCAGGATTGGTACAACCCCGGATCCATGAGCAAGCAATACTTCTTGGGCCTTGAGAAGTACTTGGGAGGATCCGATAACCCAGCCTACCCTGGTGGGCCGTTATTTAACCCATTGGGCTTTGGAAAAGATGAGAAGTCACTGAACGAGTTGAAGCTCAAGGAGGTGAAGAACGGGAGGTTGGCTATGTTGGCAATCTTGGGCTACTTTATCCAAGCCCTTGTGACTGGAGTTGGGCCGTACCAAAACCTGTTGGACCATTTGGCTGACCCAGTGAACAACAACATCTTGACCAGCCTCAAGTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

276

Amino Acids

29.84

Weight (kDa)

6.84

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	67 - 246	5.2e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccB1I	GGYRCC	2 cut(s)	266, 347
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	4 cut(s)	537, 550, 585, 598
AcoI	YGGCCR	1 cut(s)	435
AfaI	GTAC	3 cut(s)	533, 581, 761
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	673
AjnI	CCWGG	3 cut(s)	220, 522, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	7 cut(s)	83, 113, 299, 392, 401, 487, 676
AluI	AGCT	7 cut(s)	83, 113, 299, 392, 401, 487, 676
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	4 cut(s)	537, 550, 585, 598
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	7 cut(s)	247, 379, 435, 456, 568, 617, 755
ApeKI	GCWGC	2 cut(s)	5, 131
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AsiGI	ACCGGT	1 cut(s)	419
AspS9I	GGNCC	6 cut(s)	247, 456, 568, 617, 755, 775
AsuC2I	CCSGG	2 cut(s)	434, 540
AsuHPI	GGTGA	4 cut(s)	112, 236, 317, 697
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	775
BamHI	GGATCC	2 cut(s)	542, 590
BanI	GGYRCC	2 cut(s)	266, 347
BbsI	GAAGAC	2 cut(s)	209, 472
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	17, 143
BccI	CCATC	2 cut(s)	203, 285
BceAI	ACGGC	2 cut(s)	604, 742
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	3 cut(s)	222, 524, 612
BcnI	CCSGG	2 cut(s)	434, 540
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	17, 68
BfuAI	ACCTGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	2 cut(s)	6, 132
BlsI	GCNGC	2 cut(s)	7, 133
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	5 cut(s)	222, 434, 524, 540, 612
Bme18I	GGWCC	1 cut(s)	775
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	6 cut(s)	247, 456, 568, 617, 755, 775
BmiI	GGNNCC	7 cut(s)	62, 268, 349, 413, 442, 544, 592
BmrFI	CCNGG	5 cut(s)	222, 434, 524, 540, 612
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	785
BpiI	GAAGAC	2 cut(s)	209, 472
BpmI	CTGGAG	1 cut(s)	768
BpuEI	CTTGAG	3 cut(s)	593, 662, 803
BpuMI	CCSGG	2 cut(s)	434, 540
BsaJI	CCNNGG	4 cut(s)	407, 432, 538, 610
BsaWI	WCCGGW	2 cut(s)	269, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	751, 791
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	222, 524, 612
BseDI	CCNNGG	4 cut(s)	407, 432, 538, 610
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	98, 267
BseNI	ACTGG	2 cut(s)	751, 791
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	17, 143
BseYI	CCCAGC	1 cut(s)	601
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	7 cut(s)	249, 381, 437, 458, 570, 619, 757
BshNI	GGYRCC	2 cut(s)	266, 347
BshTI	ACCGGT	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	5 cut(s)	270, 420, 434, 438, 540
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	7 cut(s)	249, 381, 437, 458, 570, 619, 757
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	77, 363, 542, 590
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	7 cut(s)	249, 381, 437, 458, 570, 619, 757
BspCNI	CTCAG	2 cut(s)	97, 266
BspLI	GGNNCC	7 cut(s)	62, 268, 349, 413, 442, 544, 592
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	4 cut(s)	537, 550, 585, 598
BspT107I	GGYRCC	2 cut(s)	266, 347
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	751, 791
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	4 cut(s)	407, 432, 538, 610
BssMI	GATC	4 cut(s)	77, 363, 542, 590
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	3 cut(s)	222, 524, 612
Bst4CI	ACNGT	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	489, 554
BstDEI	CTNAG	2 cut(s)	84, 253
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	80, 366, 545, 593
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	77, 363, 542, 590
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 347, 398, 710
BstNI	CCWGG	3 cut(s)	222, 524, 612
BstSCI	CCNGG	5 cut(s)	220, 432, 522, 538, 610
BstV1I	GCAGC	2 cut(s)	17, 143
BstV2I	GAAGAC	2 cut(s)	209, 472
BstX2I	RGATCY	3 cut(s)	363, 542, 590
BstYI	RGATCY	3 cut(s)	363, 542, 590
BstZI	CGGCCG	1 cut(s)	435
BsuRI	GGCC	7 cut(s)	249, 381, 437, 458, 570, 619, 757
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	659, 798
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	489, 554
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	6 cut(s)	247, 456, 568, 617, 755, 775
Csp6I	GTAC	3 cut(s)	532, 580, 760
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	2 cut(s)	331, 547
CviQI	GTAC	3 cut(s)	532, 580, 760
DdeI	CTNAG	2 cut(s)	84, 253
DpnI	GATC	4 cut(s)	79, 365, 544, 592
DpnII	GATC	4 cut(s)	77, 363, 542, 590
EaeI	YGGCCR	1 cut(s)	435
EagI	CGGCCG	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	775
Eco52I	CGGCCG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	359
EcoRII	CCWGG	3 cut(s)	220, 522, 610
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	2 cut(s)	334, 550
FaiI	YATR	6 cut(s)	231, 303, 327, 332, 548, 707
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	2 cut(s)	330, 546
Fnu4HI	GCNGC	2 cut(s)	6, 132
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	6, 132
FspBI	CTAG	2 cut(s)	17, 68
GluI	GCNGC	2 cut(s)	6, 132
GsaI	CCCAGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	7 cut(s)	249, 381, 437, 458, 570, 619, 757
HapII	CCGG	5 cut(s)	270, 420, 434, 438, 540
Hin1II	CATG	2 cut(s)	334, 550
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	234, 385, 427
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	5 cut(s)	270, 420, 434, 438, 540
HphI	GGTGA	4 cut(s)	112, 236, 317, 697
Hpy166II	GTNNAC	2 cut(s)	36, 796
Hpy188I	TCNGA	2 cut(s)	256, 595
Hpy188III	TCNNGA	1 cut(s)	808
Hpy8I	GTNNAC	2 cut(s)	36, 796
Hpy99I	CGWCG	3 cut(s)	28, 31, 34
HpyAV	CCTTC	2 cut(s)	40, 257
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	2 cut(s)	322, 517
HpyCH4V	TGCA	3 cut(s)	182, 341, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 347, 398, 710
HpyF3I	CTNAG	2 cut(s)	84, 253
HpySE526I	ACGT	2 cut(s)	322, 517
Hsp92II	CATG	2 cut(s)	334, 550
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	77, 363, 542, 590
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	2 cut(s)	17, 143
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	17, 68
MaeII	ACGT	2 cut(s)	322, 517
MaeIII	GTNAC	3 cut(s)	224, 657, 742
MalI	GATC	4 cut(s)	79, 365, 544, 592
MboI	GATC	4 cut(s)	77, 363, 542, 590
MboII	GAAGA	4 cut(s)	87, 209, 472, 700
MflI	RGATCY	3 cut(s)	363, 542, 590
MhlI	GDGCHC	1 cut(s)	513
MmeI	TCCRAC	1 cut(s)	753
MseI	TTAA	5 cut(s)	35, 150, 494, 627, 829
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	5 cut(s)	270, 420, 434, 438, 540
MspR9I	CCNGG	5 cut(s)	222, 434, 524, 540, 612
MvaI	CCWGG	3 cut(s)	222, 524, 612
MwoI	GCNNNNNNNGC	4 cut(s)	11, 347, 398, 710
NciI	CCSGG	2 cut(s)	434, 540
NdeII	GATC	4 cut(s)	77, 363, 542, 590
NlaIII	CATG	2 cut(s)	334, 550
NlaIV	GGNNCC	7 cut(s)	62, 268, 349, 413, 442, 544, 592
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	3 cut(s)	224, 657, 742
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	234, 385, 427
PfoI	TCCNGGA	1 cut(s)	522
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	7, 133
Psp6I	CCWGG	3 cut(s)	220, 522, 610
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	3 cut(s)	220, 522, 610
PspN4I	GGNNCC	7 cut(s)	62, 268, 349, 413, 442, 544, 592
PspPI	GGNCC	6 cut(s)	247, 456, 568, 617, 755, 775
PsuI	RGATCY	3 cut(s)	363, 542, 590
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	533, 581, 761
RsaNI	GTAC	3 cut(s)	532, 580, 760
SaqAI	TTAA	5 cut(s)	35, 150, 494, 627, 829
SatI	GCNGC	2 cut(s)	6, 132
Sau3AI	GATC	4 cut(s)	77, 363, 542, 590
Sau96I	GGNCC	6 cut(s)	247, 456, 568, 617, 755, 775
ScaI	AGTACT	1 cut(s)	581
ScrFI	CCNGG	5 cut(s)	222, 434, 524, 540, 612
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	1 cut(s)	775
SmlI	CTYRAG	3 cut(s)	572, 677, 818
SmoI	CTYRAG	3 cut(s)	572, 677, 818
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	17, 68
StyD4I	CCNGG	5 cut(s)	220, 432, 522, 538, 610
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	2 cut(s)	325, 520
TaqI	TCGA	4 cut(s)	44, 237, 282, 483
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	234, 385, 427
Tru1I	TTAA	5 cut(s)	35, 150, 494, 627, 829
Tru9I	TTAA	5 cut(s)	35, 150, 494, 627, 829
TscAI	CASTG	2 cut(s)	666, 798
TseFI	GTSAC	3 cut(s)	224, 657, 742
TseI	GCWGC	2 cut(s)	5, 131
Tsp45I	GTSAC	3 cut(s)	224, 657, 742
TspDTI	ATGAA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	666, 798
VpaK11BI	GGWCC	1 cut(s)	775
XspI	CTAG	2 cut(s)	17, 68
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.