Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8361399.1

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 628

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8361399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 628 bp

gtgtaattgtagtcttccaggtgactatggattcgacccattgggcctctcagacccagaaggcaccggagggttcatcgaaccaagatggttagcttatggtgaggtcatcaatggacgttatgccatgttgggtgcaatcggtgccattgcacccgagatcttggggaaacttggcctgattccagctgaaacagctctcccttggttccaaaccggtgtgattcccccggccggaacctacaactattgggccgacccttacaccctattcgtcttcgagcttgccttaatgggctttgccgagcacagacgtttccaggattggtacaaccccggatccatgagcaagcaatacttcttgggccttgagaagtacttgggaggatccgataacccagcctaccctggtgggccgttatttaacccattgggctttggaaaagatgagaagtcactgaacgagttgaagctcaaggaggtgaagaacgggaggttggctatgttggcaatcttgggctactttatccaagcccttgtgactggagttgggccgtaccaaaacctgttggaccatttggctgacccagtgaacaacaacatcttgaccagcctcaagttccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

208

Amino Acids

22.78

Weight (kDa)

5.01

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	63, 144
AclWI	GGATC	4 cut(s)	334, 347, 382, 395
AcoI	YGGCCR	1 cut(s)	232
AfaI	GTAC	3 cut(s)	330, 378, 558
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	3 cut(s)	17, 319, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	5 cut(s)	96, 189, 198, 284, 473
AluI	AGCT	5 cut(s)	96, 189, 198, 284, 473
Alw21I	GWGCWC	1 cut(s)	310
AlwI	GGATC	4 cut(s)	334, 347, 382, 395
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	7 cut(s)	44, 176, 232, 253, 365, 414, 552
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
AsiGI	ACCGGT	1 cut(s)	216
AspS9I	GGNCC	6 cut(s)	44, 253, 365, 414, 552, 572
AsuC2I	CCSGG	2 cut(s)	231, 337
AsuHPI	GGTGA	3 cut(s)	33, 114, 494
AvaI	CYCGRG	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	572
BamHI	GGATCC	2 cut(s)	339, 387
BanI	GGYRCC	2 cut(s)	63, 144
BbsI	GAAGAC	2 cut(s)	6, 269
Bbv12I	GWGCWC	1 cut(s)	310
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	401, 539
BciT130I	CCWGG	3 cut(s)	19, 321, 409
BcnI	CCSGG	2 cut(s)	231, 337
BglII	AGATCT	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	378
Bme1390I	CCNGG	5 cut(s)	19, 231, 321, 337, 409
Bme18I	GGWCC	1 cut(s)	572
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	6 cut(s)	44, 253, 365, 414, 552, 572
BmiI	GGNNCC	6 cut(s)	65, 146, 210, 239, 341, 389
BmrFI	CCNGG	5 cut(s)	19, 231, 321, 337, 409
BmrI	ACTGGG	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	582
BpiI	GAAGAC	2 cut(s)	6, 269
BpmI	CTGGAG	1 cut(s)	565
BpuEI	CTTGAG	3 cut(s)	390, 459, 600
BpuMI	CCSGG	2 cut(s)	231, 337
BsaJI	CCNNGG	4 cut(s)	204, 229, 335, 407
BsaWI	WCCGGW	2 cut(s)	66, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	548, 588
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	19, 321, 409
BseDI	CCNNGG	4 cut(s)	204, 229, 335, 407
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	2 cut(s)	548, 588
BseX3I	CGGCCG	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	7 cut(s)	46, 178, 234, 255, 367, 416, 554
BshNI	GGYRCC	2 cut(s)	63, 144
BshTI	ACCGGT	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	5 cut(s)	67, 217, 231, 235, 337
BslI	CCNNNNNNNGG	1 cut(s)	234
BsnI	GGCC	7 cut(s)	46, 178, 234, 255, 367, 416, 554
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	160, 339, 387
BspANI	GGCC	7 cut(s)	46, 178, 234, 255, 367, 416, 554
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	6 cut(s)	65, 146, 210, 239, 341, 389
BspPI	GGATC	4 cut(s)	334, 347, 382, 395
BspT107I	GGYRCC	2 cut(s)	63, 144
BsrDI	GCAATG	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	548, 588
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	204, 229, 335, 407
BssMI	GATC	3 cut(s)	160, 339, 387
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	19, 321, 409
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	286, 351
BstDEI	CTNAG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	163, 342, 390
BstMBI	GATC	3 cut(s)	160, 339, 387
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 195, 507
BstNI	CCWGG	3 cut(s)	19, 321, 409
BstSCI	CCNGG	5 cut(s)	17, 229, 319, 335, 407
BstV2I	GAAGAC	2 cut(s)	6, 269
BstX2I	RGATCY	3 cut(s)	160, 339, 387
BstYI	RGATCY	3 cut(s)	160, 339, 387
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	7 cut(s)	46, 178, 234, 255, 367, 416, 554
BtsIMutI	CAGTG	2 cut(s)	456, 595
Cac8I	GCNNGC	2 cut(s)	286, 351
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	6 cut(s)	44, 253, 365, 414, 552, 572
Csp6I	GTAC	3 cut(s)	329, 377, 557
CspAI	ACCGGT	1 cut(s)	216
CviAII	CATG	2 cut(s)	128, 344
CviQI	GTAC	3 cut(s)	329, 377, 557
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	162, 341, 389
DpnII	GATC	3 cut(s)	160, 339, 387
EaeI	YGGCCR	1 cut(s)	232
EagI	CGGCCG	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	572
Eco52I	CGGCCG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	156
EcoRII	CCWGG	3 cut(s)	17, 319, 407
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	131, 347
FaiI	YATR	6 cut(s)	28, 100, 124, 129, 345, 504
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	2 cut(s)	127, 343
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	565
HaeIII	GGCC	7 cut(s)	46, 178, 234, 255, 367, 416, 554
HapII	CCGG	5 cut(s)	67, 217, 231, 235, 337
Hin1II	CATG	2 cut(s)	131, 347
HinfI	GANTC	3 cut(s)	31, 182, 224
HpaII	CCGG	5 cut(s)	67, 217, 231, 235, 337
HphI	GGTGA	3 cut(s)	33, 114, 494
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	2 cut(s)	53, 392
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	1 cut(s)	54
HpyCH4IV	ACGT	2 cut(s)	119, 314
HpyCH4V	TGCA	2 cut(s)	138, 153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 195, 507
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	119, 314
Hsp92II	CATG	2 cut(s)	131, 347
Kzo9I	GATC	3 cut(s)	160, 339, 387
MaeII	ACGT	2 cut(s)	119, 314
MaeIII	GTNAC	3 cut(s)	21, 454, 539
MalI	GATC	3 cut(s)	162, 341, 389
MboI	GATC	3 cut(s)	160, 339, 387
MboII	GAAGA	3 cut(s)	6, 269, 497
MflI	RGATCY	3 cut(s)	160, 339, 387
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	7 cut(s)	57, 63, 98, 378, 473, 487, 624
MseI	TTAA	3 cut(s)	291, 424, 626
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	5 cut(s)	67, 217, 231, 235, 337
MspR9I	CCNGG	5 cut(s)	19, 231, 321, 337, 409
MvaI	CCWGG	3 cut(s)	19, 321, 409
MwoI	GCNNNNNNNGC	3 cut(s)	144, 195, 507
NciI	CCSGG	2 cut(s)	231, 337
NdeII	GATC	3 cut(s)	160, 339, 387
NlaIII	CATG	2 cut(s)	131, 347
NlaIV	GGNNCC	6 cut(s)	65, 146, 210, 239, 341, 389
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	3 cut(s)	21, 454, 539
PfeI	GAWTC	3 cut(s)	31, 182, 224
PfoI	TCCNGGA	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	216
Psp6I	CCWGG	3 cut(s)	17, 319, 407
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	17, 319, 407
PspN4I	GGNNCC	6 cut(s)	65, 146, 210, 239, 341, 389
PspPI	GGNCC	6 cut(s)	44, 253, 365, 414, 552, 572
PsuI	RGATCY	3 cut(s)	160, 339, 387
PvuII	CAGCTG	1 cut(s)	189
RsaI	GTAC	3 cut(s)	330, 378, 558
RsaNI	GTAC	3 cut(s)	329, 377, 557
SaqAI	TTAA	3 cut(s)	291, 424, 626
Sau3AI	GATC	3 cut(s)	160, 339, 387
Sau96I	GGNCC	6 cut(s)	44, 253, 365, 414, 552, 572
ScaI	AGTACT	1 cut(s)	378
ScrFI	CCNGG	5 cut(s)	19, 231, 321, 337, 409
SduI	GDGCHC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	3 cut(s)	369, 474, 615
SmoI	CTYRAG	3 cut(s)	369, 474, 615
Sse9I	AATT	1 cut(s)	5
StyD4I	CCNGG	5 cut(s)	17, 229, 319, 335, 407
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	2 cut(s)	122, 317
TaqI	TCGA	3 cut(s)	34, 79, 280
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	31, 182, 224
Tru1I	TTAA	3 cut(s)	291, 424, 626
Tru9I	TTAA	3 cut(s)	291, 424, 626
TscAI	CASTG	2 cut(s)	463, 595
TseFI	GTSAC	3 cut(s)	21, 454, 539
Tsp45I	GTSAC	3 cut(s)	21, 454, 539
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	463, 595
VpaK11BI	GGWCC	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.