Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Forward (+)

20429662 .. 20431261

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G191900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCCACACAAGCTCTGGTATCATCTTCATCCTTAACAGCCTCAAAGGAGGCTGCAAGGCATTTACTAGGAGGAAAGGCAGTCCAATCTCCATTTGGGTCAAGAAAATCTGCTTCCTTTGTAGTCAGGGCAGCCTCTACACCCCCTGTTAAGCAAGGAGCAGACAGACAATTGTGGTTTGCATCCAAGCAGAGCCTTACTTACTTGGATGGCAGCCTTCCTGGTGACTTTGGATTTGATCCGTTGGGGCTGTCTGACCCGGAAGGCACAGGAGGGTTCATTGAGCCGAGATGGCTAGCGTATGGAGAGGTCATCAATGGACGTTATGCCATGCTGGGTGCAGTTGGTGCCATAGCACCAGAGATTCTTGGAAAGCTTGGCCTAATCCCACCAGAGACAGCCCTCCCCTGGTTCCAAACAGGGGTGATCCCTCCAGCTGGAACCTACAACTACTGGGCTGACCCCTATACACTCTTTGTCTTTGAGCTAGCCCTCATGGGCTTTGCAGAGCACAGGAGGTTCCAGGACTGGTACAATCCAGGGTCCATGGGCAAGCAGTACTTTTTGGGCTTGGAGAAGTACTTGGGTGGCTCAGGGGACCCAGCTTACCCGGGTGGGCCCCTCTTCAACCCTCTGGGATTTGGCAAAGATGAGAAGTCTTTGAAGGACTTGAAGCTCAAGGAGGTGAAGAATGGGAGGCTGGCTATGTTGGCAATTTTGGGTTACTTCATACAAGGCCTTGTGACTGGTGTGGGGCCCTTCCAGAACCTTCTGGATCATTTGGCTGACCCTGTGAACAACAACGTCTTGACCAGCCTCAAGTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

277

Amino Acids

29.75

Weight (kDa)

7.85

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AclWI	GGATC	3 cut(s)	233, 421, 783
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	533, 560, 581
AfiI	CCNNNNNNNGG	3 cut(s)	408, 421, 437
AgsI	TTSAA	3 cut(s)	628, 664, 673
AjnI	CCWGG	4 cut(s)	220, 407, 522, 538
AluBI	AGCT	6 cut(s)	14, 376, 437, 487, 605, 676
AluI	AGCT	6 cut(s)	14, 376, 437, 487, 605, 676
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	233, 421, 783
Ama87I	CYCGRG	1 cut(s)	610
AoxI	GGCC	5 cut(s)	3, 379, 617, 736, 755
ApaI	GGGCCC	2 cut(s)	621, 759
ApeKI	GCWGC	3 cut(s)	53, 131, 213
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	6 cut(s)	543, 598, 617, 618, 755, 756
AsuC2I	CCSGG	3 cut(s)	260, 611, 612
AsuHPI	GGTGA	3 cut(s)	236, 436, 697
AsuNHI	GCTAGC	2 cut(s)	295, 487
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	2 cut(s)	543, 598
BaeGI	GKGCMC	2 cut(s)	621, 759
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	621, 759
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	40, 143, 225
BccI	CCATC	2 cut(s)	203, 285
BciT130I	CCWGG	4 cut(s)	222, 409, 524, 540
BcnI	CCSGG	3 cut(s)	260, 611, 612
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	68, 296, 488
BglI	GCCNNNNNGGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	54, 132, 214
BlsI	GCNGC	3 cut(s)	55, 133, 215
BmcAI	AGTACT	2 cut(s)	560, 581
Bme1390I	CCNGG	7 cut(s)	222, 260, 409, 524, 540, 611, 612
Bme18I	GGWCC	2 cut(s)	543, 598
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	6 cut(s)	543, 598, 617, 618, 755, 756
BmrFI	CCNGG	7 cut(s)	222, 260, 409, 524, 540, 611, 612
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	191
BmtI	GCTAGC	2 cut(s)	299, 491
BmuI	ACTGGG	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	592
BpuEI	CTTGAG	2 cut(s)	662, 803
BpuMI	CCSGG	3 cut(s)	260, 611, 612
BsaJI	CCNNGG	4 cut(s)	407, 539, 546, 610
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 421, 437
Bse1I	ACTGG	3 cut(s)	458, 533, 751
BseBI	CCWGG	4 cut(s)	222, 409, 524, 540
BseDI	CCNNGG	4 cut(s)	407, 539, 546, 610
BseGI	GGATG	3 cut(s)	29, 182, 214
BseLI	CCNNNNNNNGG	3 cut(s)	408, 421, 437
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	3 cut(s)	458, 533, 751
BseSI	GKGCMC	2 cut(s)	621, 759
BseXI	GCAGC	3 cut(s)	40, 143, 225
BseYI	CCCAGC	2 cut(s)	334, 601
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	5, 381, 619, 738, 757
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	260, 611
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	408, 421, 437
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	5 cut(s)	5, 381, 619, 738, 757
BsoBI	CYCGRG	1 cut(s)	610
Bsp120I	GGGCCC	2 cut(s)	617, 755
Bsp1286I	GDGCHC	3 cut(s)	513, 621, 759
Bsp143I	GATC	3 cut(s)	238, 426, 775
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	5 cut(s)	5, 381, 619, 738, 757
BspCNI	CTCAG	1 cut(s)	605
BspOI	GCTAGC	2 cut(s)	299, 491
BspPI	GGATC	3 cut(s)	233, 421, 783
BspT107I	GGYRCC	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	458, 533, 751
BssECI	CCNNGG	4 cut(s)	407, 539, 546, 610
BssMI	GATC	3 cut(s)	238, 426, 775
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	4 cut(s)	222, 409, 524, 540
Bst6I	CTCTTC	1 cut(s)	629
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	4 cut(s)	297, 489, 554, 702
BstDEI	CTNAG	1 cut(s)	592
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	29, 182, 214
BstKTI	GATC	3 cut(s)	241, 429, 778
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	238, 426, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 292, 347, 710
BstNI	CCWGG	4 cut(s)	222, 409, 524, 540
BstSCI	CCNGG	7 cut(s)	220, 258, 407, 522, 538, 609, 610
BstSLI	GKGCMC	2 cut(s)	621, 759
BstV1I	GCAGC	3 cut(s)	40, 143, 225
BsuRI	GGCC	5 cut(s)	5, 381, 619, 738, 757
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	29, 182, 214
Cac8I	GCNNGC	4 cut(s)	297, 489, 554, 702
Cfr13I	GGNCC	6 cut(s)	543, 598, 617, 618, 755, 756
Cfr9I	CCCGGG	1 cut(s)	610
Csp6I	GTAC	3 cut(s)	532, 559, 580
CviAII	CATG	3 cut(s)	331, 496, 547
CviQI	GTAC	3 cut(s)	532, 559, 580
DdeI	CTNAG	1 cut(s)	592
DpnI	GATC	3 cut(s)	240, 428, 777
DpnII	GATC	3 cut(s)	238, 426, 775
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	2 cut(s)	621, 759
Eco47I	GGWCC	2 cut(s)	543, 598
Eco88I	CYCGRG	1 cut(s)	610
EcoO109I	RGGNCCY	4 cut(s)	598, 618, 755, 756
EcoRII	CCWGG	4 cut(s)	220, 407, 522, 538
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	2 cut(s)	621, 759
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	3 cut(s)	334, 499, 550
FaiI	YATR	9 cut(s)	303, 327, 332, 353, 468, 497, 548, 707, 731
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	3 cut(s)	330, 495, 546
Fnu4HI	GCNGC	3 cut(s)	54, 132, 214
FokI	GGATG	3 cut(s)	16, 169, 221
FriOI	GRGCYC	2 cut(s)	621, 759
Fsp4HI	GCNGC	3 cut(s)	54, 132, 214
FspBI	CTAG	3 cut(s)	68, 296, 488
GluI	GCNGC	3 cut(s)	54, 132, 214
GsaI	CCCAGC	2 cut(s)	338, 605
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	5 cut(s)	5, 381, 619, 738, 757
HapII	CCGG	2 cut(s)	260, 611
Hin1II	CATG	3 cut(s)	334, 499, 550
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	260, 611
HphI	GGTGA	3 cut(s)	236, 436, 697
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	4 cut(s)	102, 763, 773, 808
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	5 cut(s)	227, 257, 658, 769, 779
HpyCH4IV	ACGT	2 cut(s)	322, 804
HpyCH4V	TGCA	4 cut(s)	56, 182, 341, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 292, 347, 710
HpyF3I	CTNAG	1 cut(s)	592
HpySE526I	ACGT	2 cut(s)	322, 804
Hsp92II	CATG	3 cut(s)	334, 499, 550
KflI	GGGWCCC	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	238, 426, 775
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	3 cut(s)	40, 143, 225
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	3 cut(s)	68, 296, 488
MaeII	ACGT	2 cut(s)	322, 804
MaeIII	GTNAC	3 cut(s)	224, 722, 742
MalI	GATC	3 cut(s)	240, 428, 777
MboI	GATC	3 cut(s)	238, 426, 775
MboII	GAAGA	3 cut(s)	18, 616, 700
MfeI	CAATTG	1 cut(s)	170
MhlI	GDGCHC	3 cut(s)	513, 621, 759
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	170, 714
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	35, 150
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	2 cut(s)	260, 611
MspR9I	CCNGG	7 cut(s)	222, 260, 409, 524, 540, 611, 612
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	4 cut(s)	222, 409, 524, 540
MwoI	GCNNNNNNNGC	4 cut(s)	11, 292, 347, 710
NciI	CCSGG	3 cut(s)	260, 611, 612
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	3 cut(s)	238, 426, 775
NheI	GCTAGC	2 cut(s)	295, 487
NlaIII	CATG	3 cut(s)	334, 499, 550
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	224, 742
PceI	AGGCCT	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	3 cut(s)	55, 133, 215
PpuMI	RGGWCCY	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	4 cut(s)	220, 407, 522, 538
PspFI	CCCAGC	2 cut(s)	334, 601
PspGI	CCWGG	4 cut(s)	220, 407, 522, 538
PspOMI	GGGCCC	2 cut(s)	617, 755
PspPI	GGNCC	6 cut(s)	543, 598, 617, 618, 755, 756
PspPPI	RGGWCCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	3 cut(s)	533, 560, 581
RsaNI	GTAC	3 cut(s)	532, 559, 580
SaqAI	TTAA	2 cut(s)	35, 150
SatI	GCNGC	3 cut(s)	54, 132, 214
Sau3AI	GATC	3 cut(s)	238, 426, 775
Sau96I	GGNCC	6 cut(s)	543, 598, 617, 618, 755, 756
ScaI	AGTACT	2 cut(s)	560, 581
ScrFI	CCNGG	7 cut(s)	222, 260, 409, 524, 540, 611, 612
SduI	GDGCHC	3 cut(s)	513, 621, 759
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	2 cut(s)	543, 598
SmaI	CCCGGG	1 cut(s)	612
SmlI	CTYRAG	2 cut(s)	677, 818
SmoI	CTYRAG	2 cut(s)	677, 818
Sse9I	AATT	2 cut(s)	170, 714
SseBI	AGGCCT	1 cut(s)	738
SspMI	CTAG	3 cut(s)	68, 296, 488
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	7 cut(s)	220, 258, 407, 522, 538, 609, 610
StyI	CCWWGG	1 cut(s)	546
TaiI	ACGT	2 cut(s)	325, 807
TasI	AATT	2 cut(s)	170, 714
TatI	WGTACW	2 cut(s)	558, 579
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	35, 150
Tru9I	TTAA	2 cut(s)	35, 150
TseFI	GTSAC	2 cut(s)	224, 742
TseI	GCWGC	3 cut(s)	53, 131, 213
Tsp45I	GTSAC	2 cut(s)	224, 742
TspDTI	ATGAA	3 cut(s)	18, 268, 718
TspGWI	ACGGA	1 cut(s)	231
TspMI	CCCGGG	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	543, 598
XcmI	CCANNNNNNNNNTGG	2 cut(s)	13, 92
XmaI	CCCGGG	1 cut(s)	610
XspI	CTAG	3 cut(s)	68, 296, 488
ZrmI	AGTACT	2 cut(s)	560, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.