Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Forward (+)

31710859 .. 31712711

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAGCACAAGCCCTGGTGTCGTCGTCGTCGTTAACCGCCTCGAAAGAGGTTGCGAGGAACTTGCTAGGAGGAAGATCAGCTCAGTCTCCATTTGGGGTGAGGAAATCAGCTTCCTTTGTTGTAAAGGCAGCCACTACTCCCCCTGTTAAGCAAGGAGCAGACAGGCAGTTGTGGTTTGCATCAAAGCAGAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTTTGGATTCGACCCATTGGGCCTCTCAGACCCAGAAGGCACCGGAGGGTTTATCGAACCAAGATGGTTAGCCTATGGTGAGATCATCAATGGACGTTTTGCCATGTTGGGTGCAGCCGGTGCCATTGCACCTGAGATTTTTGGGAAGCTCGGACTTATTCCACCTGAAACAGCTCTCCCTTGGTTCCAAACCGGTGTGATTCCCCCGGCCGGAACCTATAACTACTGGGCTGACAATTACACCCTATTCGTTTTGGAGATGGCCCTAATGGGCTTTGCCGAGCACCGACGTTTCCAGGATTGGTACAACCCCGGATCCATGAGCAAGCAATACTTCTTGGGCTTTGAGAAGTACTTGGGAGGATCCGGAAACCCAGCCTACCCTGGTGGGCCGTTATTTAACCCGTTGGGTTTTGGAAAGGATGAGAAGTCAATGAACGAGTTGAAGCTCAAGGAAGTGAAAAATGGGAGATTGGCTATGTTAGCCATATTGGGCTACTTTATCCAAGCCCTTGTGACTGGAGTTGGGCCATACCAAAACCTGTTGGACCATTTGGCTGACCCAGTGAACAACAACATCTTGACCAGCCTAAAGTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

277

Amino Acids

29.85

Weight (kDa)

7.84

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	67 - 246	6.2e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	266, 347
AccIII	TCCGGA	1 cut(s)	593
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	4 cut(s)	537, 550, 585, 598
AcoI	YGGCCR	1 cut(s)	435
AfaI	GTAC	2 cut(s)	533, 581
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	673
AjnI	CCWGG	4 cut(s)	15, 220, 522, 610
AluBI	AGCT	5 cut(s)	83, 113, 376, 401, 676
AluI	AGCT	5 cut(s)	83, 113, 376, 401, 676
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	93
AlwI	GGATC	4 cut(s)	537, 550, 585, 598
Aor13HI	TCCGGA	1 cut(s)	593
AoxI	GGCC	5 cut(s)	247, 435, 489, 617, 755
ApeKI	GCWGC	4 cut(s)	5, 131, 213, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AsiGI	ACCGGT	1 cut(s)	419
AspS9I	GGNCC	5 cut(s)	247, 490, 617, 755, 775
AsuC2I	CCSGG	2 cut(s)	434, 540
AsuHPI	GGTGA	3 cut(s)	112, 236, 317
AvaII	GGWCC	1 cut(s)	775
BamHI	GGATCC	2 cut(s)	542, 590
BanI	GGYRCC	2 cut(s)	266, 347
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	17, 143, 225, 353
BccI	CCATC	3 cut(s)	203, 285, 481
BceAI	ACGGC	1 cut(s)	604
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	4 cut(s)	17, 222, 524, 612
BcnI	CCSGG	2 cut(s)	434, 540
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	4 cut(s)	6, 132, 214, 342
BlsI	GCNGC	4 cut(s)	7, 133, 215, 343
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	6 cut(s)	17, 222, 434, 524, 540, 612
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	5 cut(s)	247, 490, 617, 755, 775
BmiI	GGNNCC	6 cut(s)	268, 349, 413, 442, 544, 592
BmrFI	CCNGG	6 cut(s)	17, 222, 434, 524, 540, 612
BmrI	ACTGGG	2 cut(s)	463, 785
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	2 cut(s)	463, 785
BpmI	CTGGAG	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	2 cut(s)	434, 540
BsaJI	CCNNGG	5 cut(s)	15, 407, 432, 538, 610
BsaWI	WCCGGW	3 cut(s)	269, 419, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	2 cut(s)	344, 419
Bse1I	ACTGG	3 cut(s)	458, 751, 791
Bse3DI	GCAATG	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	593
BseBI	CCWGG	4 cut(s)	17, 222, 524, 612
BseDI	CCNNGG	5 cut(s)	15, 407, 432, 538, 610
BseGI	GGATG	2 cut(s)	214, 655
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	98, 267, 351
BseNI	ACTGG	3 cut(s)	458, 751, 791
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	4 cut(s)	17, 143, 225, 353
BseYI	CCCAGC	1 cut(s)	601
BsgI	GTGCAG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	5 cut(s)	249, 437, 491, 619, 757
BshNI	GGYRCC	2 cut(s)	266, 347
BshTI	ACCGGT	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	7 cut(s)	270, 345, 420, 434, 438, 540, 594
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	5 cut(s)	249, 437, 491, 619, 757
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp13I	TCCGGA	1 cut(s)	593
Bsp143I	GATC	4 cut(s)	77, 309, 542, 590
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	5 cut(s)	249, 437, 491, 619, 757
BspCNI	CTCAG	3 cut(s)	97, 266, 352
BspEI	TCCGGA	1 cut(s)	593
BspLI	GGNNCC	6 cut(s)	268, 349, 413, 442, 544, 592
BspPI	GGATC	4 cut(s)	537, 550, 585, 598
BspT107I	GGYRCC	2 cut(s)	266, 347
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	2 cut(s)	344, 419
BsrI	ACTGG	3 cut(s)	458, 751, 791
BssAI	RCCGGY	2 cut(s)	344, 419
BssECI	CCNNGG	5 cut(s)	15, 407, 432, 538, 610
BssMI	GATC	4 cut(s)	77, 309, 542, 590
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	4 cut(s)	17, 222, 524, 612
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	3 cut(s)	84, 253, 360
BstF5I	GGATG	2 cut(s)	214, 655
BstKTI	GATC	4 cut(s)	80, 312, 545, 593
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	4 cut(s)	77, 309, 542, 590
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 347, 710
BstNI	CCWGG	4 cut(s)	17, 222, 524, 612
BstSCI	CCNGG	6 cut(s)	15, 220, 432, 522, 538, 610
BstV1I	GCAGC	4 cut(s)	17, 143, 225, 353
BstX2I	RGATCY	2 cut(s)	542, 590
BstYI	RGATCY	2 cut(s)	542, 590
BstZI	CGGCCG	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	249, 437, 491, 619, 757
BtsCI	GGATG	2 cut(s)	214, 655
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	1 cut(s)	554
Cfr10I	RCCGGY	2 cut(s)	344, 419
Cfr13I	GGNCC	5 cut(s)	247, 490, 617, 755, 775
Csp6I	GTAC	2 cut(s)	532, 580
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	2 cut(s)	331, 547
CviQI	GTAC	2 cut(s)	532, 580
DdeI	CTNAG	3 cut(s)	84, 253, 360
DpnI	GATC	4 cut(s)	79, 311, 544, 592
DpnII	GATC	4 cut(s)	77, 309, 542, 590
EaeI	YGGCCR	1 cut(s)	435
EagI	CGGCCG	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	775
Eco52I	CGGCCG	1 cut(s)	435
EcoRII	CCWGG	4 cut(s)	15, 220, 522, 610
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	2 cut(s)	334, 550
FaiI	YATR	7 cut(s)	303, 332, 447, 548, 707, 716, 760
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	2 cut(s)	330, 546
Fnu4HI	GCNGC	4 cut(s)	6, 132, 214, 342
FokI	GGATG	2 cut(s)	221, 662
Fsp4HI	GCNGC	4 cut(s)	6, 132, 214, 342
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	4 cut(s)	6, 132, 214, 342
GsaI	CCCAGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	5 cut(s)	249, 437, 491, 619, 757
HapII	CCGG	7 cut(s)	270, 345, 420, 434, 438, 540, 594
Hin1II	CATG	2 cut(s)	334, 550
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	3 cut(s)	193, 234, 427
HpaI	GTTAAC	1 cut(s)	36
HpaII	CCGG	7 cut(s)	270, 345, 420, 434, 438, 540, 594
HphI	GGTGA	3 cut(s)	112, 236, 317
Hpy166II	GTNNAC	2 cut(s)	36, 796
Hpy188I	TCNGA	2 cut(s)	256, 380
Hpy188III	TCNNGA	2 cut(s)	594, 808
Hpy8I	GTNNAC	2 cut(s)	36, 796
Hpy99I	CGWCG	4 cut(s)	28, 31, 34, 519
HpyAV	CCTTC	2 cut(s)	227, 257
HpyCH4IV	ACGT	2 cut(s)	322, 517
HpyCH4V	TGCA	3 cut(s)	182, 341, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 347, 710
HpyF3I	CTNAG	3 cut(s)	84, 253, 360
HpySE526I	ACGT	2 cut(s)	322, 517
Hsp92II	CATG	2 cut(s)	334, 550
Kpn2I	TCCGGA	1 cut(s)	593
KspAI	GTTAAC	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	77, 309, 542, 590
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	4 cut(s)	17, 143, 225, 353
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	2 cut(s)	322, 517
MaeIII	GTNAC	2 cut(s)	224, 742
MalI	GATC	4 cut(s)	79, 311, 544, 592
MboI	GATC	4 cut(s)	77, 309, 542, 590
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	2 cut(s)	542, 590
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	753
MnlI	CCTC	8 cut(s)	43, 51, 52, 65, 96, 260, 266, 581
MroI	TCCGGA	1 cut(s)	593
MseI	TTAA	3 cut(s)	35, 150, 627
MspI	CCGG	7 cut(s)	270, 345, 420, 434, 438, 540, 594
MspR9I	CCNGG	6 cut(s)	17, 222, 434, 524, 540, 612
MvaI	CCWGG	4 cut(s)	17, 222, 524, 612
MwoI	GCNNNNNNNGC	3 cut(s)	11, 347, 710
NciI	CCSGG	2 cut(s)	434, 540
NdeII	GATC	4 cut(s)	77, 309, 542, 590
NlaIII	CATG	2 cut(s)	334, 550
NlaIV	GGNNCC	6 cut(s)	268, 349, 413, 442, 544, 592
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	2 cut(s)	224, 742
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	234, 427
PfoI	TCCNGGA	1 cut(s)	522
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	7, 133, 215, 343
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp6I	CCWGG	4 cut(s)	15, 220, 522, 610
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	4 cut(s)	15, 220, 522, 610
PspN4I	GGNNCC	6 cut(s)	268, 349, 413, 442, 544, 592
PspPI	GGNCC	5 cut(s)	247, 490, 617, 755, 775
PsuI	RGATCY	2 cut(s)	542, 590
RsaI	GTAC	2 cut(s)	533, 581
RsaNI	GTAC	2 cut(s)	532, 580
SaqAI	TTAA	3 cut(s)	35, 150, 627
SatI	GCNGC	4 cut(s)	6, 132, 214, 342
Sau3AI	GATC	4 cut(s)	77, 309, 542, 590
Sau96I	GGNCC	5 cut(s)	247, 490, 617, 755, 775
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	6 cut(s)	17, 222, 434, 524, 540, 612
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	6 cut(s)	15, 220, 432, 522, 538, 610
StyI	CCWWGG	1 cut(s)	407
TaiI	ACGT	2 cut(s)	325, 520
TaqI	TCGA	3 cut(s)	44, 237, 282
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	234, 427
Tru1I	TTAA	3 cut(s)	35, 150, 627
Tru9I	TTAA	3 cut(s)	35, 150, 627
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	2 cut(s)	224, 742
TseI	GCWGC	4 cut(s)	5, 131, 213, 341
Tsp45I	GTSAC	2 cut(s)	224, 742
TspDTI	ATGAA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	798
VpaK11BI	GGWCC	1 cut(s)	775
XspI	CTAG	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.