Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Reverse (-)

4157384 .. 4158671

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAGCTCAAGCTCTGGTTTCATCATCTTCTCTAACGGCCTCAAAGGAGGTTGCCAGGCAGATATTTGGAGGAGCAAAGGCCGTCCAATCTCCATTTGGGTCGAGAAAATCTGCTTCCTTTGTCGTAAGGGCGGCCTCTACTCCTCCTGTTAAGCAAGGAGCGGACAGACAGTTGTGGTTTGCTTCCAAGCAGAGCCTTTCTTACTTGGATGGCAGCCTTCCCGGTGACTATGGATTCGACCCATTGGGTCTCTCAGACCCAGACGGCACAGGTGGGTTCATCGAACCCAGATGGCTAGCCTACGGTGAAGTCATCAACGGACGTTACGCCATGCTTGGTGCAGTGGGTGCAATTGCCCCAGAAATCTTGGGCAAGCTCGGCCTAATCCCGCCTGAGACTGCCCTGCCCTGGTTTCAAACAGGGGTCATCCCGCCAGCCGGGACCTACAACTACTGGGCCGACCCTTACACGCTCTTTGTCTTTGAACTTGCCCTAATGGGGTTCGCCGAGCACCGGAGGTTCCAGGACTGGTACAACCCCGGGTCCATGGCCAAGCAATACTTCTTGGGGTTTGAGAAGTACTTGGGTGGGTCCGGGAACCCGGCTTACCCTGGTGGGCCCTTGTTCAACCCGCTAGGGTTTGGGAAAGATGAGAAGTCGATGAACGAGTTGAAGCTCAAGGAAGTGAAGAATGGGAGGCTTGCCATGCTGGCAATATTGGGTTATTTTATTCAGGCTCTTGTGACTGGTGTGGGGCCCTACCAGAACCTTCTGGATCACTTGGCTGACCCAGTTCACAACAACATCTTGACCAGCCTCAAGTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

278

Amino Acids

29.96

Weight (kDa)

7.84

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	68 - 247	2.4e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	5 cut(s)	134, 164, 392, 434, 635
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	1 cut(s)	552
AfaI	GTAC	2 cut(s)	536, 584
AfiI	CCNNNNNNNGG	4 cut(s)	411, 440, 501, 516
AgsI	TTSAA	4 cut(s)	419, 488, 631, 676
AjnI	CCWGG	4 cut(s)	56, 410, 525, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	4 cut(s)	8, 14, 379, 679
AluI	AGCT	4 cut(s)	8, 14, 379, 679
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	257, 392
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	8 cut(s)	39, 81, 135, 382, 459, 552, 620, 758
ApaI	GGGCCC	2 cut(s)	624, 762
ApeKI	GCWGC	2 cut(s)	5, 216
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	8 cut(s)	444, 459, 546, 594, 620, 621, 758, 759
AsuC2I	CCSGG	6 cut(s)	225, 442, 543, 544, 598, 605
AsuHPI	GGTGA	2 cut(s)	239, 320
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	3 cut(s)	444, 546, 594
BaeGI	GKGCMC	2 cut(s)	624, 762
BalI	TGGCCA	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	624, 762
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	17, 228
BccI	CCATC	2 cut(s)	206, 288
BceAI	ACGGC	3 cut(s)	54, 68, 283
BciT130I	CCWGG	4 cut(s)	58, 412, 527, 615
BcnI	CCSGG	6 cut(s)	225, 442, 543, 544, 598, 605
BcoDI	GTCTC	2 cut(s)	257, 392
BfaI	CTAG	2 cut(s)	299, 638
BglI	GCCNNNNNGGC	1 cut(s)	713
BisI	GCNGC	3 cut(s)	6, 135, 217
BlsI	GCNGC	3 cut(s)	7, 136, 218
BmcAI	AGTACT	1 cut(s)	584
Bme18I	GGWCC	3 cut(s)	444, 546, 594
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	8 cut(s)	444, 459, 546, 594, 620, 621, 758, 759
BmiI	GGNNCC	8 cut(s)	445, 524, 547, 595, 602, 622, 759, 760
BmrI	ACTGGG	2 cut(s)	466, 788
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	2 cut(s)	466, 788
BpuEI	CTTGAG	2 cut(s)	665, 806
BpuMI	CCSGG	6 cut(s)	225, 442, 543, 544, 598, 605
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	5 cut(s)	410, 541, 542, 549, 613
BsaWI	WCCGGW	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	4 cut(s)	411, 440, 501, 516
Bse1I	ACTGG	4 cut(s)	461, 536, 754, 794
BseBI	CCWGG	4 cut(s)	58, 412, 527, 615
BseDI	CCNNGG	5 cut(s)	410, 541, 542, 549, 613
BseGI	GGATG	2 cut(s)	217, 429
BseLI	CCNNNNNNNGG	4 cut(s)	411, 440, 501, 516
BseMII	CTCAG	2 cut(s)	270, 387
BseNI	ACTGG	4 cut(s)	461, 536, 754, 794
BseRI	GAGGAG	2 cut(s)	87, 135
BseSI	GKGCMC	2 cut(s)	624, 762
BseXI	GCAGC	2 cut(s)	17, 228
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	8 cut(s)	41, 83, 137, 384, 461, 554, 622, 760
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	6 cut(s)	225, 441, 517, 543, 597, 605
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	411, 440, 501, 516
BsmAI	GTCTC	2 cut(s)	257, 392
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	8 cut(s)	41, 83, 137, 384, 461, 554, 622, 760
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	542
Bsp120I	GGGCCC	2 cut(s)	620, 758
Bsp1286I	GDGCHC	3 cut(s)	516, 624, 762
Bsp143I	GATC	1 cut(s)	778
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	5 cut(s)	134, 164, 392, 434, 635
BspANI	GGCC	8 cut(s)	41, 83, 137, 384, 461, 554, 622, 760
BspCNI	CTCAG	2 cut(s)	269, 388
BspLI	GGNNCC	8 cut(s)	445, 524, 547, 595, 602, 622, 759, 760
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	786
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	4 cut(s)	461, 536, 754, 794
BssECI	CCNNGG	5 cut(s)	410, 541, 542, 549, 613
BssMI	GATC	1 cut(s)	778
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	4 cut(s)	58, 412, 527, 615
Bst4CI	ACNGT	2 cut(s)	174, 308
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	5 cut(s)	300, 377, 438, 705, 714
BstDEI	CTNAG	2 cut(s)	256, 396
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	217, 429
BstKTI	GATC	1 cut(s)	781
BstMAI	GTCTC	2 cut(s)	257, 392
BstMBI	GATC	1 cut(s)	778
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 350, 381, 709, 713
BstNI	CCWGG	4 cut(s)	58, 412, 527, 615
BstSLI	GKGCMC	2 cut(s)	624, 762
BstV1I	GCAGC	2 cut(s)	17, 228
BsuRI	GGCC	8 cut(s)	41, 83, 137, 384, 461, 554, 622, 760
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	217, 429
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	5 cut(s)	300, 377, 438, 705, 714
Cfr13I	GGNCC	8 cut(s)	444, 459, 546, 594, 620, 621, 758, 759
Cfr9I	CCCGGG	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	535, 583
CviAII	CATG	3 cut(s)	334, 550, 709
CviQI	GTAC	2 cut(s)	535, 583
DdeI	CTNAG	2 cut(s)	256, 396
DpnI	GATC	1 cut(s)	780
DpnII	GATC	1 cut(s)	778
EaeI	YGGCCR	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	2 cut(s)	624, 762
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	3 cut(s)	444, 546, 594
Eco88I	CYCGRG	1 cut(s)	542
EcoO109I	RGGNCCY	4 cut(s)	444, 621, 758, 759
EcoRII	CCWGG	4 cut(s)	56, 410, 525, 613
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	624, 762
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	337, 553, 712
FaiI	YATR	4 cut(s)	234, 335, 551, 710
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	3 cut(s)	333, 549, 708
FauI	CCCGC	3 cut(s)	399, 441, 642
Fnu4HI	GCNGC	3 cut(s)	6, 135, 217
FokI	GGATG	2 cut(s)	224, 416
FriOI	GRGCYC	2 cut(s)	624, 762
Fsp4HI	GCNGC	3 cut(s)	6, 135, 217
FspBI	CTAG	2 cut(s)	299, 638
GluI	GCNGC	3 cut(s)	6, 135, 217
HaeIII	GGCC	8 cut(s)	41, 83, 137, 384, 461, 554, 622, 760
HapII	CCGG	6 cut(s)	225, 441, 517, 543, 597, 605
Hin1II	CATG	3 cut(s)	337, 553, 712
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	6 cut(s)	225, 441, 517, 543, 597, 605
HphI	GGTGA	2 cut(s)	239, 320
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	105, 776, 811
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	2 cut(s)	230, 782
HpyCH4III	ACNGT	2 cut(s)	174, 308
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	344, 353
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 350, 381, 709, 713
HpyF3I	CTNAG	2 cut(s)	256, 396
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	337, 553, 712
Kzo9I	GATC	1 cut(s)	778
LmnI	GCTCC	2 cut(s)	74, 161
Lsp1109I	GCAGC	2 cut(s)	17, 228
MaeI	CTAG	2 cut(s)	299, 638
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	3 cut(s)	227, 326, 745
MalI	GATC	1 cut(s)	780
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	778
MboII	GAAGA	2 cut(s)	21, 703
MfeI	CAATTG	1 cut(s)	354
MhlI	GDGCHC	3 cut(s)	516, 624, 762
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	554
MnlI	CCTC	8 cut(s)	43, 52, 65, 148, 156, 513, 693, 830
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	2 cut(s)	153, 832
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	6 cut(s)	225, 441, 517, 543, 597, 605
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	4 cut(s)	58, 412, 527, 615
MwoI	GCNNNNNNNGC	5 cut(s)	11, 350, 381, 709, 713
NciI	CCSGG	6 cut(s)	225, 442, 543, 544, 598, 605
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	778
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	337, 553, 712
NlaIV	GGNNCC	8 cut(s)	445, 524, 547, 595, 602, 622, 759, 760
NmeAIII	GCCGAG	2 cut(s)	360, 535
NmuCI	GTSAC	2 cut(s)	227, 745
PfeI	GAWTC	1 cut(s)	237
PfoI	TCCNGGA	2 cut(s)	525, 596
PkrI	GCNGC	3 cut(s)	7, 136, 218
PpuMI	RGGWCCY	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	4 cut(s)	56, 410, 525, 613
PspGI	CCWGG	4 cut(s)	56, 410, 525, 613
PspN4I	GGNNCC	8 cut(s)	445, 524, 547, 595, 602, 622, 759, 760
PspOMI	GGGCCC	2 cut(s)	620, 758
PspPI	GGNCC	8 cut(s)	444, 459, 546, 594, 620, 621, 758, 759
PspPPI	RGGWCCY	1 cut(s)	444
PsrI	GAACNNNNNNTAC	2 cut(s)	593, 625
RsaI	GTAC	2 cut(s)	536, 584
RsaNI	GTAC	2 cut(s)	535, 583
SaqAI	TTAA	2 cut(s)	153, 832
SatI	GCNGC	3 cut(s)	6, 135, 217
Sau3AI	GATC	1 cut(s)	778
Sau96I	GGNCC	8 cut(s)	444, 459, 546, 594, 620, 621, 758, 759
ScaI	AGTACT	1 cut(s)	584
SduI	GDGCHC	3 cut(s)	516, 624, 762
SinI	GGWCC	3 cut(s)	444, 546, 594
SmaI	CCCGGG	1 cut(s)	544
SmlI	CTYRAG	3 cut(s)	9, 680, 821
SmoI	CTYRAG	3 cut(s)	9, 680, 821
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	5 cut(s)	134, 164, 392, 434, 635
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	2 cut(s)	299, 638
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	174, 308
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	4 cut(s)	104, 240, 285, 662
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	153, 832
Tru9I	TTAA	2 cut(s)	153, 832
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	2 cut(s)	227, 745
TseI	GCWGC	2 cut(s)	5, 216
Tsp45I	GTSAC	2 cut(s)	227, 745
TspDTI	ATGAA	3 cut(s)	12, 271, 680
TspGWI	ACGGA	1 cut(s)	336
TspMI	CCCGGG	1 cut(s)	542
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	3 cut(s)	444, 546, 594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmaI	CCCGGG	1 cut(s)	542
XspI	CTAG	2 cut(s)	299, 638
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.