Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Reverse (-)

10760912 .. 10762734

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1123800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAGCACAAGCTCTGGTTTCATCATCTTCTTTAACAGCCTCAAAGGAGGTTGCTAGGCAGATATTTGGAGGAACAAAGGCTGTCCAATCTCCATTTGGATCGAGAAAATCTGCTTCCTTTGTAGTAAGGGCGGCATCTACTCCTCCCGTTAAGCAAGGAGCAGACAGACAGTTGTGGTTTGCTTCCAAGCAGAGCCTTTCTTACTTGGATGGCAGCCTTCCTGGCGACTTCGGATTCGATCCATTGGGCCTCTCTGACCCAGAAGGCACAGGTGGGTTCATCGAGCCCAGATGGCTAGCCTACGGTGAAGTCATCAACGGACGTTACGCCATGCTGGGTGCAGTTGGTGCAATTGCCCCAGAAATCCTGGGCAAGCTCGGCCTTATCCCGGCCGAGACTGCCCTTCCTTGGTTCCAAACCGGAGTTATCCCGCCAGCCGGGACCTACAACTACTGGGCCGACCCCTACACACTCTTTGTCTTCGAGCTCGCCCTAATGGGCTTCGCCGAGCACCGGAGGTTCCAGGACTGGTACAACCCCGGGTCCATGAGCAAGCAATACTTTTTGGGCCTTGAGAAGTACTTGGGCGGGTCGGGTAACCCAGCTTACCCCGGTGGGCCTTTGTTCAACCCGCTAGGGTTTGGGAAAGACGAGAAGTCGATGAATGAGTTGAAGCTCAAGGAAGTGAAGAATGGGAGGCTTGCCATGCTGGCAATTTTGGGTTATTTTATTCAGGGTCTTGTGACTGGTGTGGGGCCCTACCAGAACCTTCTGGATCACTTGGCTGACCCGGTCAACAACAACATCTTGACCAGCCTCAAGTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

278

Amino Acids

29.91

Weight (kDa)

7.83

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	68 - 247	6.6e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	134, 434, 591, 635
AclWI	GGATC	3 cut(s)	109, 236, 786
AcoI	YGGCCR	1 cut(s)	393
AfaI	GTAC	2 cut(s)	536, 584
AfiI	CCNNNNNNNGG	4 cut(s)	391, 411, 440, 516
AgsI	TTSAA	2 cut(s)	631, 676
AhdI	GACNNNNNGTC	1 cut(s)	658
AjnI	CCWGG	3 cut(s)	223, 369, 525
AluBI	AGCT	5 cut(s)	14, 379, 490, 608, 679
AluI	AGCT	5 cut(s)	14, 379, 490, 608, 679
Alw21I	GWGCWC	2 cut(s)	492, 516
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	3 cut(s)	109, 236, 786
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	7 cut(s)	250, 382, 393, 459, 571, 620, 758
ApaI	GGGCCC	1 cut(s)	762
ApeKI	GCWGC	2 cut(s)	5, 216
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	8 cut(s)	250, 444, 459, 546, 571, 620, 758, 759
AsuC2I	CCSGG	6 cut(s)	392, 442, 543, 544, 615, 794
AsuHPI	GGTGA	1 cut(s)	320
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	444, 546
BaeGI	GKGCMC	1 cut(s)	762
BanII	GRGCYC	3 cut(s)	291, 492, 762
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	2 cut(s)	492, 516
BbvI	GCAGC	2 cut(s)	17, 228
BccI	CCATC	2 cut(s)	206, 288
BciT130I	CCWGG	3 cut(s)	225, 371, 527
BcnI	CCSGG	6 cut(s)	392, 442, 543, 544, 615, 794
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	3 cut(s)	57, 299, 638
BglI	GCCNNNNNGGC	3 cut(s)	225, 295, 713
BisI	GCNGC	3 cut(s)	6, 135, 217
BlsI	GCNGC	3 cut(s)	7, 136, 218
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	9 cut(s)	225, 371, 392, 442, 527, 543, 544, 615, 794
Bme18I	GGWCC	2 cut(s)	444, 546
BmeRI	GACNNNNNGTC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	8 cut(s)	250, 444, 459, 546, 571, 620, 758, 759
BmiI	GGNNCC	6 cut(s)	416, 445, 524, 547, 759, 760
BmrFI	CCNGG	9 cut(s)	225, 371, 392, 442, 527, 543, 544, 615, 794
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	146
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	475
BpuEI	CTTGAG	3 cut(s)	596, 665, 806
BpuMI	CCSGG	6 cut(s)	392, 442, 543, 544, 615, 794
BsaJI	CCNNGG	5 cut(s)	370, 410, 541, 542, 613
BsaWI	WCCGGW	2 cut(s)	422, 516
Bsc4I	CCNNNNNNNGG	4 cut(s)	391, 411, 440, 516
Bse1I	ACTGG	3 cut(s)	461, 536, 754
BseBI	CCWGG	3 cut(s)	225, 371, 527
BseDI	CCNNGG	5 cut(s)	370, 410, 541, 542, 613
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	4 cut(s)	391, 411, 440, 516
BseNI	ACTGG	3 cut(s)	461, 536, 754
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	762
BseX3I	CGGCCG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	17, 228
BseYI	CCCAGC	2 cut(s)	337, 604
BsgI	GTGCAG	1 cut(s)	363
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	7 cut(s)	252, 384, 395, 461, 573, 622, 760
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	492, 516
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	7 cut(s)	392, 423, 441, 517, 543, 615, 794
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	391, 411, 440, 516
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	7 cut(s)	252, 384, 395, 461, 573, 622, 760
BsoBI	CYCGRG	1 cut(s)	542
Bsp120I	GGGCCC	1 cut(s)	758
Bsp1286I	GDGCHC	4 cut(s)	291, 492, 516, 762
Bsp143I	GATC	3 cut(s)	101, 241, 778
BspACI	CCGC	4 cut(s)	134, 434, 591, 635
BspANI	GGCC	7 cut(s)	252, 384, 395, 461, 573, 622, 760
BspLI	GGNNCC	6 cut(s)	416, 445, 524, 547, 759, 760
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	109, 236, 786
BsrI	ACTGG	3 cut(s)	461, 536, 754
BssECI	CCNNGG	5 cut(s)	370, 410, 541, 542, 613
BssMI	GATC	3 cut(s)	101, 241, 778
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	3 cut(s)	225, 371, 527
Bst4CI	ACNGT	2 cut(s)	174, 308
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	7 cut(s)	300, 377, 438, 492, 557, 705, 714
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	3 cut(s)	104, 244, 781
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	3 cut(s)	101, 241, 778
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 225, 295, 350, 381, 401, 709, 713
BstNI	CCWGG	3 cut(s)	225, 371, 527
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	9 cut(s)	223, 369, 390, 440, 525, 541, 542, 613, 792
BstSLI	GKGCMC	1 cut(s)	762
BstV1I	GCAGC	2 cut(s)	17, 228
BstV2I	GAAGAC	1 cut(s)	475
BstZI	CGGCCG	1 cut(s)	393
BsuRI	GGCC	7 cut(s)	252, 384, 395, 461, 573, 622, 760
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	7 cut(s)	300, 377, 438, 492, 557, 705, 714
Cfr13I	GGNCC	8 cut(s)	250, 444, 459, 546, 571, 620, 758, 759
Cfr9I	CCCGGG	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	535, 583
CviAII	CATG	3 cut(s)	334, 550, 709
CviQI	GTAC	2 cut(s)	535, 583
DpnI	GATC	3 cut(s)	103, 243, 780
DpnII	GATC	3 cut(s)	101, 241, 778
DriI	GACNNNNNGTC	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	393
EagI	CGGCCG	1 cut(s)	393
Eam1105I	GACNNNNNGTC	1 cut(s)	658
Ecl136II	GAGCTC	1 cut(s)	490
EclXI	CGGCCG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	3 cut(s)	291, 492, 762
Eco47I	GGWCC	2 cut(s)	444, 546
Eco52I	CGGCCG	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	490
EcoO109I	RGGNCCY	3 cut(s)	444, 758, 759
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	223, 369, 525
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	3 cut(s)	291, 492, 762
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	337, 553, 712
FaiI	YATR	3 cut(s)	335, 551, 710
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	3 cut(s)	333, 549, 708
FauI	CCCGC	3 cut(s)	441, 584, 642
Fnu4HI	GCNGC	3 cut(s)	6, 135, 217
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	3 cut(s)	291, 492, 762
Fsp4HI	GCNGC	3 cut(s)	6, 135, 217
FspBI	CTAG	3 cut(s)	57, 299, 638
GluI	GCNGC	3 cut(s)	6, 135, 217
GsaI	CCCAGC	2 cut(s)	341, 608
HaeIII	GGCC	7 cut(s)	252, 384, 395, 461, 573, 622, 760
HapII	CCGG	7 cut(s)	392, 423, 441, 517, 543, 615, 794
Hin1II	CATG	3 cut(s)	337, 553, 712
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	7 cut(s)	392, 423, 441, 517, 543, 615, 794
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	2 cut(s)	236, 259
Hpy188III	TCNNGA	3 cut(s)	105, 776, 811
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	4 cut(s)	230, 260, 416, 782
HpyCH4III	ACNGT	2 cut(s)	174, 308
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	344, 353
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 225, 295, 350, 381, 401, 709, 713
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	337, 553, 712
Kzo9I	GATC	3 cut(s)	101, 241, 778
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	2 cut(s)	17, 228
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	3 cut(s)	57, 299, 638
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	3 cut(s)	326, 599, 745
MalI	GATC	3 cut(s)	103, 243, 780
MboI	GATC	3 cut(s)	101, 241, 778
MboII	GAAGA	3 cut(s)	21, 475, 703
MfeI	CAATTG	1 cut(s)	354
MhlI	GDGCHC	4 cut(s)	291, 492, 516, 762
MluCI	AATT	2 cut(s)	354, 717
MnlI	CCTC	8 cut(s)	43, 52, 65, 156, 263, 513, 693, 830
MseI	TTAA	3 cut(s)	35, 153, 832
MspI	CCGG	7 cut(s)	392, 423, 441, 517, 543, 615, 794
MspR9I	CCNGG	9 cut(s)	225, 371, 392, 442, 527, 543, 544, 615, 794
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	3 cut(s)	225, 371, 527
MwoI	GCNNNNNNNGC	8 cut(s)	11, 225, 295, 350, 381, 401, 709, 713
NciI	CCSGG	6 cut(s)	392, 442, 543, 544, 615, 794
NdeII	GATC	3 cut(s)	101, 241, 778
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	337, 553, 712
NlaIV	GGNNCC	6 cut(s)	416, 445, 524, 547, 759, 760
NmeAIII	GCCGAG	3 cut(s)	360, 421, 535
NmuCI	GTSAC	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	794
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	3 cut(s)	7, 136, 218
PpuMI	RGGWCCY	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	3 cut(s)	223, 369, 525
PspEI	GGTNACC	1 cut(s)	599
PspFI	CCCAGC	2 cut(s)	337, 604
PspGI	CCWGG	3 cut(s)	223, 369, 525
PspN4I	GGNNCC	6 cut(s)	416, 445, 524, 547, 759, 760
PspOMI	GGGCCC	1 cut(s)	758
PspPI	GGNCC	8 cut(s)	250, 444, 459, 546, 571, 620, 758, 759
PspPPI	RGGWCCY	1 cut(s)	444
PsyI	GACNNNGTC	1 cut(s)	794
RsaI	GTAC	2 cut(s)	536, 584
RsaNI	GTAC	2 cut(s)	535, 583
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	35, 153, 832
SatI	GCNGC	3 cut(s)	6, 135, 217
Sau3AI	GATC	3 cut(s)	101, 241, 778
Sau96I	GGNCC	8 cut(s)	250, 444, 459, 546, 571, 620, 758, 759
ScaI	AGTACT	1 cut(s)	584
ScrFI	CCNGG	9 cut(s)	225, 371, 392, 442, 527, 543, 544, 615, 794
SduI	GDGCHC	4 cut(s)	291, 492, 516, 762
SfaNI	GCATC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	444, 546
SmaI	CCCGGG	1 cut(s)	544
SmlI	CTYRAG	3 cut(s)	575, 680, 821
SmoI	CTYRAG	3 cut(s)	575, 680, 821
Sse9I	AATT	2 cut(s)	354, 717
SsiI	CCGC	4 cut(s)	134, 434, 591, 635
SspMI	CTAG	3 cut(s)	57, 299, 638
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	9 cut(s)	223, 369, 390, 440, 525, 541, 542, 613, 792
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	174, 308
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	5 cut(s)	104, 240, 285, 486, 662
TasI	AATT	2 cut(s)	354, 717
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	3 cut(s)	35, 153, 832
Tru9I	TTAA	3 cut(s)	35, 153, 832
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	2 cut(s)	5, 216
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	3 cut(s)	12, 271, 680
TspGWI	ACGGA	1 cut(s)	336
TspMI	CCCGGG	1 cut(s)	542
Tth111I	GACNNNGTC	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	444, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmaI	CCCGGG	1 cut(s)	542
XspI	CTAG	3 cut(s)	57, 299, 638
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.