Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008524

Physical Location & Seq

Genomic Coordinates Forward (+)

22699715 .. 22701412

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCAGCACAAGCACTTGTGTCTTCTTCACTTACCTCCTCTGTTCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCGTCTGCCTCACAGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGCTTACCTGGTGACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGCCAAGATGGCTAGCATACGGAGAGATCATCAACGGACGGTTCGCCATGTTGGGTGCAGCTGGAGCTATTGCTCCTGAGATTTTAGGAAAGGCTGGTCTGATTCCAGCAGAGACTGCTCTTCCTTGGTTCCAAACCGGTGTGATTCCACCAGCAGGGACATACACTTACTGGGCAGACAATTACACACTCTTTGTTCTCGAGATGGCTCTGATGGGATTCGCTGAGCACCGGAGGTTACAGGACTGGTACAACCCAGGATCTATGGGAAAACAGTACTTCTTGGGGTTAGAGAAGGGTTTGGCCGGTTCAGGTAACCCGGCTTACCCCGGTGGACCTTTCTTCAACCCTCTTGGGTTTGGGAAAGATGAGAAGTCACTGAAGGAGTTGAAACTCAAGGAGGTCAAGAACGGTAGACTGGCTATGCTCGCCATCCTCGGTTACTTTATCCAAGGACTAGTGACCGGTGTGGGACCTTATCAGAACCTGCTTGATCACTTGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

273

Amino Acids

29.18

Weight (kDa)

8.61

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	14 - 188	2.8e-44	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61520 AT1G61520 AT1G61520
fragaria_vesca	FvH4_6g40150 FvH4_6g40150
malus_domestica	MD09G1134800.v1.1 MD17G1123800.v1.1
prunus_persica	Prupe.3G191900_v2.0.a1 Prupe.3G191900_v2.0.a1
pyrus_communis	pycom09g05590 pycom17g11520
rosa_chinensis	RchiOBHm_Chr2g0155141
rosa_laevigata	RLG00000020822
rosa_multiflora	Rmu_co8361399.1_g000001 Rmu_sc0002048.1_g000048 Rmu_sc0004976.1_g000033
rosa_roxburghii	Rroxscaffold_2G00093910
rosa_rugosa	Rorug02G0445700
rosa_samantha	Rh2AG511800 Rh2BG522600 Rh2CG496800 Rh2DG532300
rosa_wichuraiana	Rw2G042050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	688
AclWI	GGATC	2 cut(s)	541, 773
AcoI	YGGCCR	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	3 cut(s)	259, 524, 551
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgeI	ACCGGT	2 cut(s)	410, 737
AgsI	TTSAA	2 cut(s)	619, 664
AhlI	ACTAGT	1 cut(s)	730
AjnI	CCWGG	2 cut(s)	211, 529
AluBI	AGCT	5 cut(s)	53, 122, 207, 335, 341
AluI	AGCT	5 cut(s)	53, 122, 207, 335, 341
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	191, 380
AlwI	GGATC	2 cut(s)	541, 773
AlwNI	CAGNNNCTG	2 cut(s)	389, 760
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	5 cut(s)	5, 122, 125, 204, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AsiGI	ACCGGT	2 cut(s)	410, 737
AspS9I	GGNCC	2 cut(s)	608, 746
AsuC2I	CCSGG	2 cut(s)	593, 603
AsuHPI	GGTGA	1 cut(s)	227
AsuNHI	GCTAGC	1 cut(s)	286
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	608, 746
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	5 cut(s)	17, 109, 112, 216, 344
BccI	CCATC	5 cut(s)	194, 276, 472, 481, 713
BciT130I	CCWGG	2 cut(s)	213, 531
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	593, 603
BcoDI	GTCTC	2 cut(s)	191, 380
BcuI	ACTAGT	1 cut(s)	730
BfaI	CTAG	3 cut(s)	54, 287, 731
BfuAI	ACCTGC	1 cut(s)	768
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	5 cut(s)	6, 123, 126, 205, 333
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	5 cut(s)	7, 124, 127, 206, 334
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	4 cut(s)	213, 531, 593, 603
Bme18I	GGWCC	2 cut(s)	608, 746
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	608, 746
BmiI	GGNNCC	3 cut(s)	151, 404, 747
BmrFI	CCNGG	4 cut(s)	213, 531, 593, 603
BmrI	ACTGGG	1 cut(s)	454
BmtI	GCTAGC	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	2 cut(s)	282, 357
Bpu1102I	GCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	2 cut(s)	653, 794
BpuMI	CCSGG	2 cut(s)	593, 603
BsaJI	CCNNGG	5 cut(s)	398, 529, 601, 709, 724
BsaWI	WCCGGW	3 cut(s)	410, 504, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	3 cut(s)	410, 578, 737
Bse1I	ACTGG	5 cut(s)	77, 265, 449, 524, 696
BseBI	CCWGG	2 cut(s)	213, 531
BseDI	CCNNGG	5 cut(s)	398, 529, 601, 709, 724
BseGI	GGATG	2 cut(s)	205, 705
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	342, 489
BseNI	ACTGG	5 cut(s)	77, 265, 449, 524, 696
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	5 cut(s)	17, 109, 112, 216, 344
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	578
BshTI	ACCGGT	2 cut(s)	410, 737
BsiHKAI	GWGCWC	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	6 cut(s)	411, 505, 579, 593, 603, 738
BslFI	GGGAC	2 cut(s)	445, 759
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	191, 380
BsmFI	GGGAC	2 cut(s)	445, 759
BsnI	GGCC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	300, 533, 766, 778
Bsp1720I	GCTNAGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	343, 490
BspLI	GGNNCC	3 cut(s)	151, 404, 747
BspMI	ACCTGC	1 cut(s)	768
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	541, 773
BspQI	GCTCTTC	1 cut(s)	399
BsrFI	RCCGGY	3 cut(s)	410, 578, 737
BsrI	ACTGG	5 cut(s)	77, 265, 449, 524, 696
BssAI	RCCGGY	3 cut(s)	410, 578, 737
BssECI	CCNNGG	5 cut(s)	398, 529, 601, 709, 724
BssMI	GATC	4 cut(s)	300, 533, 766, 778
BssT1I	CCWWGG	2 cut(s)	398, 724
Bst2UI	CCWGG	2 cut(s)	213, 531
Bst4CI	ACNGT	3 cut(s)	315, 549, 686
Bst6I	CTCTTC	2 cut(s)	95, 399
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	288, 702
BstDEI	CTNAG	2 cut(s)	351, 498
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	205, 705
BstKTI	GATC	4 cut(s)	303, 536, 769, 781
BstMAI	GTCTC	2 cut(s)	191, 380
BstMBI	GATC	4 cut(s)	300, 533, 766, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 283, 338, 389, 701
BstNI	CCWGG	2 cut(s)	213, 531
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	4 cut(s)	211, 529, 591, 601
BstV1I	GCAGC	5 cut(s)	17, 109, 112, 216, 344
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	205, 705
BtsIMutI	CAGTG	2 cut(s)	650, 817
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	2 cut(s)	288, 702
CaiI	CAGNNNCTG	2 cut(s)	389, 760
Cfr10I	RCCGGY	3 cut(s)	410, 578, 737
Cfr13I	GGNCC	2 cut(s)	608, 746
CseI	GACGC	1 cut(s)	72
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	3 cut(s)	258, 523, 550
CspAI	ACCGGT	2 cut(s)	410, 737
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	3 cut(s)	258, 523, 550
DdeI	CTNAG	2 cut(s)	351, 498
DpnI	GATC	4 cut(s)	302, 535, 768, 780
DpnII	GATC	4 cut(s)	300, 533, 766, 778
EaeI	YGGCCR	1 cut(s)	576
Eam1104I	CTCTTC	2 cut(s)	95, 399
EarI	CTCTTC	2 cut(s)	95, 399
Eco130I	CCWWGG	2 cut(s)	398, 724
Eco47I	GGWCC	2 cut(s)	608, 746
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	746
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	211, 529
EcoT14I	CCWWGG	2 cut(s)	398, 724
ErhI	CCWWGG	2 cut(s)	398, 724
FaeI	CATG	1 cut(s)	325
FaiI	YATR	6 cut(s)	222, 292, 323, 436, 539, 698
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	445, 759
FatI	CATG	1 cut(s)	321
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	688
Fnu4HI	GCNGC	5 cut(s)	6, 123, 126, 205, 333
FokI	GGATG	2 cut(s)	212, 692
Fsp4HI	GCNGC	5 cut(s)	6, 123, 126, 205, 333
FspBI	CTAG	3 cut(s)	54, 287, 731
GluI	GCNGC	5 cut(s)	6, 123, 126, 205, 333
GsuI	CTGGAG	2 cut(s)	282, 357
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	6 cut(s)	411, 505, 579, 593, 603, 738
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	6 cut(s)	184, 225, 267, 376, 418, 492
HpaII	CCGG	6 cut(s)	411, 505, 579, 593, 603, 738
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	608, 689, 787
Hpy188I	TCNGA	5 cut(s)	48, 247, 375, 486, 756
Hpy188III	TCNNGA	5 cut(s)	350, 473, 475, 679, 799
Hpy8I	GTNNAC	3 cut(s)	608, 689, 787
HpyAV	CCTTC	3 cut(s)	248, 562, 649
HpyCH4III	ACNGT	3 cut(s)	315, 549, 686
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	2 cut(s)	128, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 283, 338, 389, 701
HpyF3I	CTNAG	2 cut(s)	351, 498
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	300, 533, 766, 778
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	149, 338, 352
Lsp1109I	GCAGC	5 cut(s)	17, 109, 112, 216, 344
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	3 cut(s)	54, 287, 731
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	6 cut(s)	215, 510, 587, 648, 713, 733
MalI	GATC	4 cut(s)	302, 535, 768, 780
MboI	GATC	4 cut(s)	300, 533, 766, 778
MboII	GAAGA	6 cut(s)	15, 18, 109, 112, 386, 607
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	193
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	6 cut(s)	411, 505, 579, 593, 603, 738
MspR9I	CCNGG	4 cut(s)	213, 531, 593, 603
MvaI	CCWGG	2 cut(s)	213, 531
MwoI	GCNNNNNNNGC	5 cut(s)	11, 283, 338, 389, 701
NciI	CCSGG	2 cut(s)	593, 603
NdeII	GATC	4 cut(s)	300, 533, 766, 778
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	3 cut(s)	151, 404, 747
NmuCI	GTSAC	3 cut(s)	215, 648, 733
PaeR7I	CTCGAG	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	399
PfeI	GAWTC	5 cut(s)	225, 267, 376, 418, 492
PinAI	ACCGGT	2 cut(s)	410, 737
PkrI	GCNGC	5 cut(s)	7, 124, 127, 206, 334
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	211, 529
PspEI	GGTNACC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	211, 529
PspN4I	GGNNCC	3 cut(s)	151, 404, 747
PspPI	GGNCC	2 cut(s)	608, 746
PspPPI	RGGWCCY	1 cut(s)	746
PstNI	CAGNNNCTG	2 cut(s)	389, 760
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	3 cut(s)	259, 524, 551
RsaNI	GTAC	3 cut(s)	258, 523, 550
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	5 cut(s)	6, 123, 126, 205, 333
Sau3AI	GATC	4 cut(s)	300, 533, 766, 778
Sau96I	GGNCC	2 cut(s)	608, 746
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	4 cut(s)	213, 531, 593, 603
SduI	GDGCHC	1 cut(s)	504
SexAI	ACCWGGT	1 cut(s)	211
Sfr274I	CTCGAG	1 cut(s)	473
SinI	GGWCC	2 cut(s)	608, 746
SlaI	CTCGAG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	473, 668, 809
SmoI	CTYRAG	3 cut(s)	473, 668, 809
SpeI	ACTAGT	1 cut(s)	730
Sse9I	AATT	1 cut(s)	454
SspMI	CTAG	3 cut(s)	54, 287, 731
StyD4I	CCNGG	4 cut(s)	211, 529, 591, 601
StyI	CCWWGG	2 cut(s)	398, 724
TaaI	ACNGT	3 cut(s)	315, 549, 686
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	2 cut(s)	228, 474
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	5 cut(s)	225, 267, 376, 418, 492
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	3 cut(s)	215, 648, 733
TseI	GCWGC	5 cut(s)	5, 122, 125, 204, 332
Tsp45I	GTSAC	3 cut(s)	215, 648, 733
TspDTI	ATGAA	2 cut(s)	165, 259
TspGWI	ACGGA	2 cut(s)	309, 324
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	2 cut(s)	608, 746
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	688
XspI	CTAG	3 cut(s)	54, 287, 731
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.