Prupe.3G198800_v2.0.a1
MYB Family

Transcriptional adapter

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
20834624 .. 20839119
4496 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G198800.3

Sequence Viewer

Length: 1680 bp
ATGGGTCGGTCCCGAGCAGCTTCGCATCCCGCTGTAGACAATCACAACCAGAGTAGGGGCAAAAGAAAGAGAACAGCTTCAGGTGCAGAGCCAGCAGAGAACAGTAGCACAGCTCAGAGAGCTGTAGCCCAAGAAACTAGCGAACCCAAAGGGGCTTTCTACCACTGCAATTATTGCAACAAAGATATATCTGGGAAAACTCGCATAAAGTGTGTGGTGTGCCCAGATTTTGACCTTTGCATTGAGTGCTTCTCCGTTGGAGCTGAACTTACACCTCACAAATGCAATCATCCGTACAGGGTTATGGACAATTTGTCTTTTCCACTTTTATGTCCAGACTGGAATGCAGATGAAGAGATGCTATTGCTTGAGGGTATTGAAATGTATGGATTTGGGAACTGGACCGAAGTTTCTGAACATGTTGGAACAAAAAGCAGACAACATTGTATTGACCATTTTAAAGCTATATATATGAACTCTCCGCGCTTTCCTCTACCAGACATGTCTCATGTTATGGGAAAGAGCAGAGAGGAGCTTCTTGCCTTGGCTAAGGGCTCGGGTGAAATCAAGAAAGAAGTTCCCATGCTTGTGGAGATTACGTTGAAAGAGGTGTCCCCCTTTTCCACAGGAGTCAAGTGTGAAGAATTGAAAAAGAATCCAGCTTGTCAATCTTCATCCCACTCAACTGCTGATGATGCCTCAGGTCTGGTCCTAGGTGCTGTGAAGAAGGCATCCAACAAAGCGCAGATTAAGGATGAGACTAAAGTCTATAAAGTGGAAGAATCTCAAGTTGATCGGAGCGTTGGAGGGAAAAAACTAAGGAGTTTAGGGGATGAGGGACCTTCTATAACAGAATTTAGTGGCTATAATTTCAAGAGACAAGAGTTTGAAATTGAATATGATAACGATGCTGAGCAGATACTGGCAGATATGGAATTTAAAGATTCTGACACTAATGCTGACCGGGAATTGAAACTACGAGTTCTACACGTCTACTCAAAGAGGCTTGATGAGAGGAAACGTAGGAAGGATTTCATACTTGAAAGAAATCTGCTGTACCCTGACCCTTTTGAGAAGAACCTCTCACCCGAAGAGAGAGAAATATATCAACGCTTCAAGGTTTTCATGCGGTTCCACTCAAATGAAGAGCACAAGGAATTGCTCAAGAGTATCATTGAGGAACAACAGATTGTCAAAAGAATACTAGATCTTCAGGAGGCTAGAACAGCTGGCTGTAGGACAGCTGCTGAAGCAAGCAGATACCTTGAGGAGAAGAGAAAGAAGGAAAATGAAGAAAGTAACCTGAGGATCAAAGAAAGCTCCCAGGCTGGTAAAGGCTTGCAGATCAGTCCTCGGGGAGCTTTTAAGGGATCCACAGGTCTGCATCCTGTTAGCAAGGACTCATTTTCAACTACACAAGCCATTTCCAGCTCCTTGGACTATTGGGACATAACTGGCCTAGTCGGGGCCGATTTACTCTCCGAAACCGAACAAAGACTTTGCAGTGAGATGAGAATCCTACCATCACATTATCTAAACATGCTGCAGATCATCTCCACTGAGATTGAGAATGGCAATGTTAAGAAGAAATCTGATGCCCATAGTCTGTTCAAGGTTGAACCATCCAAAGTTGATAGGGTTTACGATATGCTTGTGAAAAAGGGAATGGCGCGAGAATAG

Protein Analysis

560

Amino Acids

63.32

Weight (kDa)

6.63

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 36, 993
AccII CGCG 2 cut(s) 484, 1672
AciI CCGC 3 cut(s) 30, 482, 1129
AclWI GGATC 3 cut(s) 1316, 1365, 1378
AcsI RAATTY 2 cut(s) 854, 935
AcuI CTGAAG 3 cut(s) 63, 1196, 1269
AfaI GTAC 2 cut(s) 296, 1058
AfiI CCNNNNNNNGG 2 cut(s) 55, 1465
AflIII ACRYGT 3 cut(s) 418, 501, 988
AhdI GACNNNNNGTC 1 cut(s) 313
AjiI CACGTC 1 cut(s) 991
AjnI CCWGG 1 cut(s) 1323
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
Alw21I GWGCWC 1 cut(s) 1152
Alw26I GTCTC 3 cut(s) 510, 752, 871
AlwI GGATC 3 cut(s) 1316, 1365, 1378
AlwNI CAGNNNCTG 2 cut(s) 922, 1247
Ama87I CYCGRG 3 cut(s) 12, 556, 1353
AoxI GGCC 2 cut(s) 1456, 1467
ApeKI GCWGC 3 cut(s) 17, 1244, 1543
ApoI RAATTY 2 cut(s) 854, 935
Asp700I GAANNNNTTC 2 cut(s) 76, 1031
AspA2I CCTAGG 1 cut(s) 712
AspLEI GCGC 3 cut(s) 486, 745, 1672
AspS9I GGNCC 5 cut(s) 9, 402, 709, 839, 1467
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 2 cut(s) 572, 1077
AvaI CYCGRG 3 cut(s) 12, 556, 1353
AvaII GGWCC 4 cut(s) 9, 402, 709, 839
AvrII CCTAGG 1 cut(s) 712
AxyI CCTNAGG 2 cut(s) 700, 1304
BaeGI GKGCMC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 1370
BanII GRGCYC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 1152
BbvI GCAGC 3 cut(s) 29, 1231, 1530
BccI CCATC 2 cut(s) 1531, 1630
BciT130I CCWGG 1 cut(s) 1325
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 3 cut(s) 510, 752, 871
BfaI CTAG 5 cut(s) 138, 713, 1205, 1221, 1460
BfmI CTRYAG 4 cut(s) 33, 123, 1234, 1544
BglII AGATCT 1 cut(s) 1207
BisI GCNGC 3 cut(s) 18, 1245, 1544
BlnI CCTAGG 1 cut(s) 712
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 3 cut(s) 19, 1246, 1545
Bme1390I CCNGG 2 cut(s) 965, 1325
Bme18I GGWCC 4 cut(s) 9, 402, 709, 839
BmeRI GACNNNNNGTC 1 cut(s) 313
BmeT110I CYCGRG 3 cut(s) 12, 556, 1353
BmgBI CACGTC 1 cut(s) 991
BmgT120I GGNCC 5 cut(s) 9, 402, 709, 839, 1467
BmiI GGNNCC 5 cut(s) 11, 840, 1133, 1372, 1468
BmrFI CCNGG 2 cut(s) 965, 1325
BmsI GCATC 7 cut(s) 34, 348, 685, 740, 898, 1393, 1585
BoxI GACNNNNGTC 1 cut(s) 764
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu10I CCTNAGC 1 cut(s) 549
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 4 cut(s) 389, 771, 1148, 1286
BpuMI CCSGG 1 cut(s) 965
BsaBI GATNNNNATC 1 cut(s) 1514
BsaJI CCNNGG 5 cut(s) 543, 712, 1323, 1352, 1434
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 1465
Bse1I ACTGG 4 cut(s) 344, 404, 927, 1459
Bse21I CCTNAGG 2 cut(s) 700, 1304
Bse3DI GCAATG 1 cut(s) 1582
Bse8I GATNNNNATC 1 cut(s) 1514
BseBI CCWGG 1 cut(s) 1325
BseDI CCNNGG 5 cut(s) 543, 712, 1323, 1352, 1434
BseGI GGATG 8 cut(s) 25, 289, 674, 731, 760, 838, 1384, 1622
BseJI GATNNNNATC 1 cut(s) 1514
BseLI CCNNNNNNNGG 2 cut(s) 55, 1465
BseMI GCAATG 1 cut(s) 1582
BseMII CTCAG 5 cut(s) 128, 714, 903, 1295, 1551
BseNI ACTGG 4 cut(s) 344, 404, 927, 1459
BseRI GAGGAG 2 cut(s) 545, 1283
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 3 cut(s) 29, 1231, 1530
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 484, 1672
BshFI GGCC 2 cut(s) 1458, 1469
BsiHKAI GWGCWC 1 cut(s) 1152
BsiHKCI CYCGRG 3 cut(s) 12, 556, 1353
BsiSI CCGG 1 cut(s) 964
BslFI GGGAC 3 cut(s) 598, 852, 1460
BslI CCNNNNNNNGG 2 cut(s) 55, 1465
BsmAI GTCTC 3 cut(s) 510, 752, 871
BsmFI GGGAC 3 cut(s) 598, 852, 1460
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 1458, 1469
BsoBI CYCGRG 3 cut(s) 12, 556, 1353
Bsp1286I GDGCHC 3 cut(s) 224, 557, 1152
Bsp143I GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
Bsp1720I GCTNAGC 1 cut(s) 912
BspACI CCGC 3 cut(s) 30, 482, 1129
BspANI GGCC 2 cut(s) 1458, 1469
BspCNI CTCAG 5 cut(s) 127, 713, 904, 1296, 1552
BspFNI CGCG 2 cut(s) 484, 1672
BspLI GGNNCC 5 cut(s) 11, 840, 1133, 1372, 1468
BspMAI CTGCAG 1 cut(s) 1548
BspPI GGATC 3 cut(s) 1316, 1365, 1378
BspQI GCTCTTC 1 cut(s) 1140
BsrDI GCAATG 1 cut(s) 1582
BsrI ACTGG 4 cut(s) 344, 404, 927, 1459
BssECI CCNNGG 5 cut(s) 543, 712, 1323, 1352, 1434
BssMI GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
BssT1I CCWWGG 3 cut(s) 543, 712, 1434
Bst2UI CCWGG 1 cut(s) 1325
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 4 cut(s) 348, 1086, 1140, 1268
BstAPI GCANNNNNTGC 2 cut(s) 174, 246
BstC8I GCNNGC 4 cut(s) 93, 1231, 1255, 1340
BstDEI CTNAG 7 cut(s) 114, 549, 700, 818, 912, 1304, 1560
BstF5I GGATG 8 cut(s) 25, 289, 674, 731, 760, 838, 1384, 1622
BstFNI CGCG 2 cut(s) 484, 1672
BstHHI GCGC 3 cut(s) 486, 745, 1672
BstKTI GATC 6 cut(s) 796, 1210, 1311, 1347, 1373, 1551
BstMAI GTCTC 3 cut(s) 510, 752, 871
BstMBI GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
BstMWI GCNNNNNNNGC 8 cut(s) 83, 92, 119, 174, 246, 695, 1226, 1250
BstNI CCWGG 1 cut(s) 1325
BstNSI RCATGY 3 cut(s) 422, 505, 1543
BstPAI GACNNNNGTC 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 963, 1323
BstSFI CTRYAG 4 cut(s) 33, 123, 1234, 1544
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 2 cut(s) 484, 1672
BstV1I GCAGC 3 cut(s) 29, 1231, 1530
BstX2I RGATCY 2 cut(s) 1207, 1370
BstXI CCANNNNNNTGG 2 cut(s) 589, 1435
BstYI RGATCY 2 cut(s) 1207, 1370
Bsu36I CCTNAGG 2 cut(s) 700, 1304
BsuRI GGCC 2 cut(s) 1458, 1469
BtrI CACGTC 1 cut(s) 991
BtsCI GGATG 8 cut(s) 25, 289, 674, 731, 760, 838, 1384, 1622
BtsI GCAGTG 2 cut(s) 163, 1510
BtsIMutI CAGTG 3 cut(s) 163, 1510, 1557
Cac8I GCNNGC 4 cut(s) 93, 1231, 1255, 1340
CaiI CAGNNNCTG 2 cut(s) 922, 1247
CfoI GCGC 3 cut(s) 486, 745, 1672
Cfr13I GGNCC 5 cut(s) 9, 402, 709, 839, 1467
Csp6I GTAC 2 cut(s) 295, 1057
CspCI CAANNNNNGTGG 2 cut(s) 1546, 1581
CviAII CATG 6 cut(s) 419, 502, 509, 583, 1126, 1540
CviQI GTAC 2 cut(s) 295, 1057
DdeI CTNAG 7 cut(s) 114, 549, 700, 818, 912, 1304, 1560
DpnI GATC 6 cut(s) 795, 1209, 1310, 1346, 1372, 1550
DpnII GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
DraI TTTAAA 2 cut(s) 460, 940
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 4 cut(s) 348, 1086, 1140, 1268
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 4 cut(s) 348, 1086, 1140, 1268
Eco130I CCWWGG 3 cut(s) 543, 712, 1434
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 4 cut(s) 9, 402, 709, 839
Eco57I CTGAAG 3 cut(s) 63, 1196, 1269
Eco81I CCTNAGG 2 cut(s) 700, 1304
Eco88I CYCGRG 3 cut(s) 12, 556, 1353
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 1323
EcoT14I CCWWGG 3 cut(s) 543, 712, 1434
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 543, 712, 1434
FaeI CATG 6 cut(s) 422, 505, 512, 586, 1129, 1543
FaqI GGGAC 3 cut(s) 598, 852, 1460
FatI CATG 6 cut(s) 418, 501, 508, 582, 1125, 1539
FauI CCCGC 1 cut(s) 37
FblI GTMKAC 2 cut(s) 36, 993
Fnu4HI GCNGC 3 cut(s) 18, 1245, 1544
FokI GGATG 8 cut(s) 12, 276, 661, 718, 767, 845, 1371, 1609
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 3 cut(s) 18, 1245, 1544
FspBI CTAG 5 cut(s) 138, 713, 1205, 1221, 1460
GlaI GCGC 3 cut(s) 485, 744, 1671
GluI GCNGC 3 cut(s) 18, 1245, 1544
HaeIII GGCC 2 cut(s) 1458, 1469
HapII CCGG 1 cut(s) 964
HhaI GCGC 3 cut(s) 486, 745, 1672
Hin1II CATG 6 cut(s) 422, 505, 512, 586, 1129, 1543
Hin6I GCGC 3 cut(s) 484, 743, 1670
HinP1I GCGC 3 cut(s) 484, 743, 1670
HinfI GANTC 6 cut(s) 630, 655, 782, 944, 1400, 1515
HpaII CCGG 1 cut(s) 964
HphI GGTGA 2 cut(s) 572, 1077
Hpy166II GTNNAC 3 cut(s) 37, 994, 1642
Hpy188I TCNGA 6 cut(s) 117, 415, 798, 949, 1483, 1594
Hpy188III TCNNGA 6 cut(s) 12, 335, 568, 874, 1165, 1214
Hpy8I GTNNAC 3 cut(s) 37, 994, 1642
HpyAV CCTTC 4 cut(s) 721, 852, 1021, 1276
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 3 cut(s) 599, 990, 1021
HpyF10VI GCNNNNNNNGC 8 cut(s) 83, 92, 119, 174, 246, 695, 1226, 1250
HpyF3I CTNAG 7 cut(s) 114, 549, 700, 818, 912, 1304, 1560
HpySE526I ACGT 3 cut(s) 599, 990, 1021
Hsp92II CATG 6 cut(s) 422, 505, 512, 586, 1129, 1543
HspAI GCGC 3 cut(s) 484, 743, 1670
Kzo9I GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
LguI GCTCTTC 1 cut(s) 1140
LmnI GCTCC 6 cut(s) 260, 532, 798, 1325, 1358, 1436
Lsp1109I GCAGC 3 cut(s) 29, 1231, 1530
LweI GCATC 7 cut(s) 34, 348, 685, 740, 898, 1393, 1585
MaeI CTAG 5 cut(s) 138, 713, 1205, 1221, 1460
MaeII ACGT 3 cut(s) 599, 990, 1021
MaeIII GTNAC 1 cut(s) 1298
MalI GATC 6 cut(s) 795, 1209, 1310, 1346, 1372, 1550
MboI GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
MflI RGATCY 2 cut(s) 1207, 1370
MhlI GDGCHC 3 cut(s) 224, 557, 1152
MluCI AATT 9 cut(s) 169, 310, 644, 854, 868, 891, 935, 968, 1157
MlyI GAGTC 2 cut(s) 639, 1394
MmeI TCCRAC 4 cut(s) 238, 403, 759, 784
MroXI GAANNNNTTC 2 cut(s) 76, 1031
MseI TTAA 5 cut(s) 459, 750, 939, 1365, 1581
MslI CAYNNNNRTG 3 cut(s) 328, 587, 1140
MspA1I CMGCKG 3 cut(s) 32, 1229, 1244
MspI CCGG 1 cut(s) 964
MspR9I CCNGG 2 cut(s) 965, 1325
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 1325
MvnI CGCG 2 cut(s) 484, 1672
MwoI GCNNNNNNNGC 8 cut(s) 83, 92, 119, 174, 246, 695, 1226, 1250
NciI CCSGG 1 cut(s) 965
NdeII GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
NlaIII CATG 6 cut(s) 422, 505, 512, 586, 1129, 1543
NlaIV GGNNCC 5 cut(s) 11, 840, 1133, 1372, 1468
NspI RCATGY 3 cut(s) 422, 505, 1543
PciI ACATGT 2 cut(s) 418, 501
PciSI GCTCTTC 1 cut(s) 1140
PctI GAATGC 1 cut(s) 349
PdmI GAANNNNTTC 2 cut(s) 76, 1031
PfeI GAWTC 4 cut(s) 655, 782, 944, 1515
PkrI GCNGC 3 cut(s) 19, 1246, 1545
PleI GAGTC 2 cut(s) 638, 1394
PpsI GAGTC 2 cut(s) 638, 1394
PpuMI RGGWCCY 1 cut(s) 839
PscI ACATGT 2 cut(s) 418, 501
PshAI GACNNNNGTC 1 cut(s) 764
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 1323
PspGI CCWGG 1 cut(s) 1323
PspN4I GGNNCC 5 cut(s) 11, 840, 1133, 1372, 1468
PspPI GGNCC 5 cut(s) 9, 402, 709, 839, 1467
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 1 cut(s) 1548
PstNI CAGNNNCTG 2 cut(s) 922, 1247
PsuI RGATCY 2 cut(s) 1207, 1370
PvuII CAGCTG 2 cut(s) 1229, 1244
RsaI GTAC 2 cut(s) 296, 1058
RsaNI GTAC 2 cut(s) 295, 1057
RseI CAYNNNNRTG 3 cut(s) 328, 587, 1140
SapI GCTCTTC 1 cut(s) 1140
SaqAI TTAA 5 cut(s) 459, 750, 939, 1365, 1581
SatI GCNGC 3 cut(s) 18, 1245, 1544
Sau3AI GATC 6 cut(s) 793, 1207, 1308, 1344, 1370, 1548
Sau96I GGNCC 5 cut(s) 9, 402, 709, 839, 1467
SchI GAGTC 2 cut(s) 639, 1394
ScrFI CCNGG 2 cut(s) 965, 1325
SduI GDGCHC 3 cut(s) 224, 557, 1152
SfaNI GCATC 7 cut(s) 34, 348, 685, 740, 898, 1393, 1585
SfcI CTRYAG 4 cut(s) 33, 123, 1234, 1544
SinI GGWCC 4 cut(s) 9, 402, 709, 839
SmiMI CAYNNNNRTG 3 cut(s) 328, 587, 1140
SmlI CTYRAG 4 cut(s) 368, 786, 1163, 1265
SmoI CTYRAG 4 cut(s) 368, 786, 1163, 1265
Sse9I AATT 9 cut(s) 169, 310, 644, 854, 868, 891, 935, 968, 1157
SsiI CCGC 3 cut(s) 30, 482, 1129
SspMI CTAG 5 cut(s) 138, 713, 1205, 1221, 1460
StyD4I CCNGG 2 cut(s) 963, 1323
StyI CCWWGG 3 cut(s) 543, 712, 1434
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 3 cut(s) 602, 993, 1024
TaqII GACCGA 1 cut(s) 419
TasI AATT 9 cut(s) 169, 310, 644, 854, 868, 891, 935, 968, 1157
TfiI GAWTC 4 cut(s) 655, 782, 944, 1515
Tru1I TTAA 5 cut(s) 459, 750, 939, 1365, 1581
Tru9I TTAA 5 cut(s) 459, 750, 939, 1365, 1581
TscAI CASTG 3 cut(s) 170, 1510, 1564
TseI GCWGC 3 cut(s) 17, 1244, 1543
TspDTI ATGAA 7 cut(s) 366, 488, 663, 1024, 1114, 1158, 1305
TspGWI ACGGA 2 cut(s) 244, 282
TspRI CASTG 3 cut(s) 170, 1510, 1564
VpaK11BI GGWCC 4 cut(s) 9, 402, 709, 839
XapI RAATTY 2 cut(s) 854, 935
XceI RCATGY 3 cut(s) 422, 505, 1543
XmaJI CCTAGG 1 cut(s) 712
XmiI GTMKAC 2 cut(s) 36, 993
XmnI GAANNNNTTC 2 cut(s) 76, 1031
XspI CTAG 5 cut(s) 138, 713, 1205, 1221, 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.