Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005178

Physical Location & Seq

Genomic Coordinates Reverse (-)

173926 .. 177333

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G002300.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCGGAGAAAGGAGGAAAAGGGTTTTCTTTGCCTACTGGCAAAGCAGTAAAATCTTCACTGAAATCTACCCCTTCTACAAAGGATGGTCTGCTTTTTCTTCGCTCTTTACTTTTCTTAACTTCTTCCTTGAAAGGGAAGGATGATAGCTCAACAAAGTCCAAGAAGGGGAGAAAAGTCCAGTTCGATTCTGAAGGTTTGCATGAACCCAAATCCAACTTCTCGTCAAAATTTGATAACCCAGCTGCTGCCTCAGGGAAAGATTGGGGCAAAGGGGGAAAAGGAGACAAGGTTGGAAATGGCAGAAAGAAAGAACCACAGCCACTGGAGCTCAAAATTGAGCAGGAACTGCCACAGAGTGCCAAATGTCTGATGGATTGTGAGGCTGCGGATATATTACAAGGAATCCAGGAGCAAATGATCCTGTTGTCTAAAGATCCTACTATTAAAATCCCTGTATCATTCGACAAAGGACTGCAGTACGCCAAAAGAACCAGCCACTATACTAATCCCCAATCTGTCAGAAAAGTTCTTGAGACTCTCACAAAATATGGTGTCTCAGATGGCGAGATAAGTGTGATTGCCAATGTTTGTCCCGAAACCACTGATGAAGTTTTTGCTCTAGTACCATCCTTGAAGACTACGAGAAGCGTGCTCAGCCAACCGCTCAAAGAAGTCTTAAGTGAGCTAACTAAGCTTAAACAGTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

238

Amino Acids

25.75

Weight (kDa)

9.39

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005178)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201
malus_domestica	MD05G1363300.v1.1 MD10G1340900.v1.1
prunus_persica	Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G017900_v2.0.a1 Prupe.4G017900_v2.0.a1
pyrus_communis	pycom05g32960 pycom10g29050
rosa_chinensis	RchiOBHm_Chr5g0000271
rosa_laevigata	RLG00000030855
rosa_rugosa	Rorug04G0382900 Rorug04G0383000
rosa_samantha	Rh5AG002000 Rh5BG003400 Rh5CG002300 Rh5DG002300
rosa_wichuraiana	Rw5G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	707
AciI	CCGC	2 cut(s)	389, 665
AclWI	GGATC	2 cut(s)	415, 431
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	2 cut(s)	482, 627
AfiI	CCNNNNNNNGG	2 cut(s)	135, 168
AflII	CTTAAG	1 cut(s)	679
AgsI	TTSAA	2 cut(s)	133, 637
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	5 cut(s)	150, 245, 331, 688, 697
AluI	AGCT	5 cut(s)	150, 245, 331, 688, 697
Alw21I	GWGCWC	2 cut(s)	333, 657
Alw26I	GTCTC	3 cut(s)	279, 530, 562
AlwI	GGATC	2 cut(s)	415, 431
AlwNI	CAGNNNCTG	3 cut(s)	248, 325, 349
ApeKI	GCWGC	3 cut(s)	245, 248, 386
ApoI	RAATTY	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	2 cut(s)	333, 657
BbvI	GCAGC	3 cut(s)	232, 235, 373
BccI	CCATC	4 cut(s)	80, 367, 557, 637
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	3 cut(s)	279, 530, 562
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	476
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	3 cut(s)	246, 249, 387
BlpI	GCTNAGC	1 cut(s)	656
BlsI	GCNGC	3 cut(s)	247, 250, 388
Bme1390I	CCNGG	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 168
Bse1I	ACTGG	3 cut(s)	43, 181, 330
Bse21I	CCTNAGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	91, 148, 629
BseLI	CCNNNNNNNGG	2 cut(s)	135, 168
BseMII	CTCAG	3 cut(s)	267, 573, 670
BseNI	ACTGG	3 cut(s)	43, 181, 330
BseXI	GCAGC	3 cut(s)	232, 235, 373
BseYI	CCCAGC	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	333, 657
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	2 cut(s)	135, 168
BsmAI	GTCTC	3 cut(s)	279, 530, 562
BsmFI	GGGAC	1 cut(s)	579
Bsp1286I	GDGCHC	2 cut(s)	333, 657
Bsp143I	GATC	2 cut(s)	420, 436
Bsp1720I	GCTNAGC	1 cut(s)	656
BspACI	CCGC	2 cut(s)	389, 665
BspCNI	CTCAG	3 cut(s)	266, 572, 669
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	2 cut(s)	415, 431
BspTI	CTTAAG	1 cut(s)	679
BsrBI	CCGCTC	1 cut(s)	667
BsrI	ACTGG	3 cut(s)	43, 181, 330
BssMI	GATC	2 cut(s)	420, 436
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	705
BstAFI	CTTAAG	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	653
BstDEI	CTNAG	4 cut(s)	253, 559, 656, 693
BstF5I	GGATG	3 cut(s)	91, 148, 629
BstKTI	GATC	2 cut(s)	423, 439
BstMAI	GTCTC	3 cut(s)	279, 530, 562
BstMBI	GATC	2 cut(s)	420, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 349, 657, 694
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	232, 235, 373
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	91, 148, 629
BtsIMutI	CAGTG	3 cut(s)	59, 323, 603
Cac8I	GCNNGC	1 cut(s)	653
CaiI	CAGNNNCTG	3 cut(s)	248, 325, 349
Csp6I	GTAC	2 cut(s)	481, 626
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	9 cut(s)	150, 245, 322, 331, 386, 498, 660, 688, 697
CviKI_1	RGCY	9 cut(s)	150, 245, 322, 331, 386, 498, 660, 688, 697
CviQI	GTAC	2 cut(s)	481, 626
DdeI	CTNAG	4 cut(s)	253, 559, 656, 693
DpnI	GATC	2 cut(s)	422, 438
DpnII	GATC	2 cut(s)	420, 436
DraIII	CACNNNGTG	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	1 cut(s)	206
FaiI	YATR	5 cut(s)	204, 395, 504, 552, 712
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	3 cut(s)	246, 249, 387
FokI	GGATG	3 cut(s)	98, 155, 616
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	246, 249, 387
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	3 cut(s)	246, 249, 387
GsaI	CCCAGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	347
Hin1II	CATG	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	3 cut(s)	188, 405, 538
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	5 cut(s)	7, 193, 372, 524, 562
Hpy188III	TCNNGA	2 cut(s)	533, 596
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	4 cut(s)	84, 133, 160, 188
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4V	TGCA	2 cut(s)	202, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 349, 657, 694
HpyF3I	CTNAG	4 cut(s)	253, 559, 656, 693
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	420, 436
LmnI	GCTCC	2 cut(s)	328, 412
Lsp1109I	GCAGC	3 cut(s)	232, 235, 373
MaeI	CTAG	1 cut(s)	623
MalI	GATC	2 cut(s)	422, 438
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	2 cut(s)	420, 436
MboII	GAAGA	4 cut(s)	48, 92, 117, 649
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	333, 657
MluCI	AATT	2 cut(s)	230, 336
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	2 cut(s)	240, 274
MnlI	CCTC	3 cut(s)	8, 262, 376
MseI	TTAA	4 cut(s)	119, 447, 680, 699
MspA1I	CMGCKG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	4 cut(s)	328, 349, 657, 694
NdeII	GATC	2 cut(s)	420, 436
NlaIII	CATG	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	188, 405
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	247, 250, 388
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	480
PstNI	CAGNNNCTG	3 cut(s)	248, 325, 349
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	482, 627
RsaNI	GTAC	2 cut(s)	481, 626
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	119, 447, 680, 699
SatI	GCNGC	3 cut(s)	246, 249, 387
Sau3AI	GATC	2 cut(s)	420, 436
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	333, 657
SetI	ASST	7 cut(s)	152, 199, 247, 294, 333, 690, 699
SfcI	CTRYAG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	533, 679
SmoI	CTYRAG	2 cut(s)	533, 679
Sse9I	AATT	2 cut(s)	230, 336
SsiI	CCGC	2 cut(s)	389, 665
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	705
TaqI	TCGA	2 cut(s)	186, 465
TasI	AATT	2 cut(s)	230, 336
TfiI	GAWTC	2 cut(s)	188, 405
Tru1I	TTAA	4 cut(s)	119, 447, 680, 699
Tru9I	TTAA	4 cut(s)	119, 447, 680, 699
TscAI	CASTG	3 cut(s)	66, 330, 610
TseI	GCWGC	3 cut(s)	245, 248, 386
TspDTI	ATGAA	2 cut(s)	219, 624
TspRI	CASTG	3 cut(s)	66, 330, 610
Vha464I	CTTAAG	1 cut(s)	679
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.