Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005178

Physical Location & Seq

Genomic Coordinates Forward (+)

29473315 .. 29476059

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g29050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTGGTCAGTGGTGGTGATGTCGGAGAAAGGAGGAAAGGGGTTTTCTTTGCCTAAATCTTCGCTGAAATCTACCCCTCCTACCACAAAGGATGGTAAGGATGATAGCTCAACAAAGTCCAAGAAGGGAAGACGAGTTCAGTTCGATTCTGAAGGTTCCCGGGAACCCAAATCACACTTTTCGTCAAAATTTGATAGCCGATCTGCTGCTTCAGGGAAAGCTGATTGGGGCAAAGGGGGGAAAGGAGACACCATCGGAAATGGTAGAAAGAAAGAACCACAGCCACTGGAGCTCAAAATTGAGCAGGAACTTCCAAAGAGTGCCAAATGTATGATGGATTGTGAGGCTGCCGATATATTACAAGGCATCCAGGAGCAGATGGTCATGTTGTCAAAAGATCCTACTATTAAAATCCCTGTATCATTCGACAAGGGACTGCAGTACGCAAACAGCTCCAGCCGTTATATTCATCCCCAGTCTGCGAGACACATTCTTGAGACACTAAAAAAATATGGTGTCAAAGATGGCGAGATATGTGTGATTGCCAATGTTTGTCCAGAAACCACAGATGAAGTTTTTGCTTTAGTACCATCCTTGAAGGCTAAAAGAAGCACGCTCAGCCAACCACTCAAAGATGTTTTAAGTGAGCTGACGAGGTTTAAAAAGGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

225

Amino Acids

24.55

Weight (kDa)

9.43

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005178)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201
malus_domestica	MD05G1363300.v1.1 MD10G1340900.v1.1
prunus_persica	Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G017900_v2.0.a1 Prupe.4G017900_v2.0.a1
pyrus_communis	pycom05g32960 pycom10g29050
rosa_chinensis	RchiOBHm_Chr5g0000271
rosa_laevigata	RLG00000030855
rosa_rugosa	Rorug04G0382900 Rorug04G0383000
rosa_samantha	Rh5AG002000 Rh5BG003400 Rh5CG002300 Rh5DG002300
rosa_wichuraiana	Rw5G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	171, 195
AfaI	GTAC	2 cut(s)	443, 588
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	369
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	5 cut(s)	108, 221, 292, 453, 649
AluI	AGCT	5 cut(s)	108, 221, 292, 453, 649
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	3 cut(s)	240, 478, 491
AlwI	GGATC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	286
Ama87I	CYCGRG	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	206, 347
ApoI	RAATTY	1 cut(s)	188
AsuC2I	CCSGG	2 cut(s)	160, 161
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	193, 334
BccI	CCATC	6 cut(s)	86, 260, 328, 373, 518, 598
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	371
BcnI	CCSGG	2 cut(s)	160, 161
BcoDI	GTCTC	3 cut(s)	240, 478, 491
BfmI	CTRYAG	1 cut(s)	437
BisI	GCNGC	2 cut(s)	207, 348
BlpI	GCTNAGC	1 cut(s)	617
BlsI	GCNGC	2 cut(s)	208, 349
Bme1390I	CCNGG	3 cut(s)	160, 161, 371
BmeT110I	CYCGRG	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	157, 165
BmrFI	CCNGG	3 cut(s)	160, 161, 371
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	136
BpmI	CTGGAG	2 cut(s)	308, 439
Bpu1102I	GCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	160, 161
BsaJI	CCNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	291, 475
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	5 cut(s)	97, 106, 366, 469, 590
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	2 cut(s)	291, 475
BseXI	GCAGC	2 cut(s)	193, 334
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	447
BsmAI	GTCTC	3 cut(s)	240, 478, 491
BsmFI	GGGAC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	200, 397
Bsp1720I	GCTNAGC	1 cut(s)	617
BspCNI	CTCAG	1 cut(s)	630
BspLI	GGNNCC	2 cut(s)	157, 165
BspMAI	CTGCAG	1 cut(s)	441
BspPI	GGATC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	291, 475
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	200, 397
Bst2UI	CCWGG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	614
BstDEI	CTNAG	1 cut(s)	617
BstF5I	GGATG	5 cut(s)	97, 106, 366, 469, 590
BstKTI	GATC	2 cut(s)	203, 400
BstMAI	GTCTC	3 cut(s)	240, 478, 491
BstMBI	GATC	2 cut(s)	200, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 618
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	158, 159, 369
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	193, 334
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtsCI	GGATG	5 cut(s)	97, 106, 366, 469, 590
BtsIMutI	CAGTG	2 cut(s)	15, 284
Cac8I	GCNNGC	1 cut(s)	614
CaiI	CAGNNNCTG	1 cut(s)	286
Cfr9I	CCCGGG	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	442, 587
CviAII	CATG	1 cut(s)	385
CviQI	GTAC	2 cut(s)	442, 587
DdeI	CTNAG	1 cut(s)	617
DpnI	GATC	2 cut(s)	202, 399
DpnII	GATC	2 cut(s)	200, 397
DraI	TTTAAA	1 cut(s)	661
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	171, 195
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	1 cut(s)	388
FaiI	YATR	7 cut(s)	332, 356, 386, 465, 513, 535, 673
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	207, 348
FokI	GGATG	5 cut(s)	104, 113, 353, 456, 577
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	207, 348
GluI	GCNGC	2 cut(s)	207, 348
GsuI	CTGGAG	2 cut(s)	308, 439
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	25, 151, 257
Hpy188III	TCNNGA	2 cut(s)	494, 557
HpyAV	CCTTC	3 cut(s)	118, 146, 592
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 618
HpyF3I	CTNAG	1 cut(s)	617
Hsp92II	CATG	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	200, 397
LmnI	GCTCC	3 cut(s)	289, 373, 458
Lsp1109I	GCAGC	2 cut(s)	193, 334
LweI	GCATC	1 cut(s)	375
MalI	GATC	2 cut(s)	202, 399
MboI	GATC	2 cut(s)	200, 397
MboII	GAAGA	2 cut(s)	51, 141
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	188, 297
MnlI	CCTC	4 cut(s)	26, 87, 337, 648
MseI	TTAA	3 cut(s)	408, 641, 660
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	3 cut(s)	160, 161, 371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	289, 618
NciI	CCSGG	2 cut(s)	160, 161
NdeII	GATC	2 cut(s)	200, 397
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	157, 165
PfeI	GAWTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	208, 349
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	157, 165
PstI	CTGCAG	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	2 cut(s)	443, 588
RsaNI	GTAC	2 cut(s)	442, 587
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	408, 641, 660
SatI	GCNGC	2 cut(s)	207, 348
Sau3AI	GATC	2 cut(s)	200, 397
ScrFI	CCNGG	3 cut(s)	160, 161, 371
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	7 cut(s)	110, 157, 223, 294, 455, 651, 659
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	437
SmaI	CCCGGG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	188, 297
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	158, 159, 369
TaqI	TCGA	2 cut(s)	144, 426
TasI	AATT	2 cut(s)	188, 297
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	408, 641, 660
Tru9I	TTAA	3 cut(s)	408, 641, 660
TscAI	CASTG	2 cut(s)	15, 291
TseI	GCWGC	2 cut(s)	206, 347
TspDTI	ATGAA	2 cut(s)	458, 585
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	2 cut(s)	15, 291
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmaI	CCCGGG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.