Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005178

Physical Location & Seq

Genomic Coordinates Forward (+)

838724 .. 840355

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATAGCTCAACAAAGTCCAAGAAGGGGAGAAAAGTCCAGTTCGATTCTGAAGCTGATTGGGGCAAAGGGGGAAAAGGAGACAAGAAAGAAAGAACCACAGCCACTGGAGCTCAAAATTGAGCAGGAACTGCCACAGAGTGCCAAATGTCTGATGGATTGTGAGGCTGCGGATATATTACAAGGAATCCAGGAGCAAATTATCCTGTTGTCTAAAGATCCTACTATTAAAATCCCTGTATCATTCGACAAGGGACTGCAGTACGCCAAAAGAACCAGCCACTATACCAATCCCCAATCTGTCAGAAAAGTTCTTGAGACTCTCACAAAATATGGTGTCTCAGATGGCGAGATAAGTGTGATTGCCAATGTTTGTCCCGAAACCACTGATGAAGTTTTTGCTCTAGTACCATCCTTGAAGGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

143

Amino Acids

15.75

Weight (kDa)

6.62

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005178)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201
malus_domestica	MD05G1363300.v1.1 MD10G1340900.v1.1
prunus_persica	Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G017900_v2.0.a1 Prupe.4G017900_v2.0.a1
pyrus_communis	pycom05g32960 pycom10g29050
rosa_chinensis	RchiOBHm_Chr5g0000271
rosa_laevigata	RLG00000030855
rosa_rugosa	Rorug04G0382900 Rorug04G0383000
rosa_samantha	Rh5AG002000 Rh5BG003400 Rh5CG002300 Rh5DG002300
rosa_wichuraiana	Rw5G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	71
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	263, 408
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	8, 55, 112
AluI	AGCT	3 cut(s)	8, 55, 112
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	3 cut(s)	74, 311, 343
AlwI	GGATC	1 cut(s)	212
AlwNI	CAGNNNCTG	2 cut(s)	106, 130
ApeKI	GCWGC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	3 cut(s)	148, 338, 418
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	74, 311, 343
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	257
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	39, 111
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	39, 111
BseXI	GCAGC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	267, 360
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	3 cut(s)	74, 311, 343
BsmFI	GGGAC	2 cut(s)	267, 360
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	261
BspPI	GGATC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	39, 111
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	410
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	3 cut(s)	74, 311, 343
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 130
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	104, 384
CaiI	CAGNNNCTG	2 cut(s)	106, 130
Csp6I	GTAC	2 cut(s)	262, 407
CviJI	RGCY	6 cut(s)	8, 55, 103, 112, 167, 279
CviKI_1	RGCY	6 cut(s)	8, 55, 103, 112, 167, 279
CviQI	GTAC	2 cut(s)	262, 407
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	114
FaiI	YATR	3 cut(s)	176, 285, 333
FaqI	GGGAC	2 cut(s)	267, 360
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	128
HinfI	GANTC	3 cut(s)	46, 186, 319
Hpy188I	TCNGA	4 cut(s)	51, 153, 305, 343
Hpy188III	TCNNGA	2 cut(s)	314, 377
HpyAV	CCTTC	2 cut(s)	18, 412
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 130
HpyF3I	CTNAG	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	109, 193
LpnPI	CCDG	8 cut(s)	52, 92, 110, 176, 203, 218, 249, 289
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	404
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	117, 198
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	1 cut(s)	157
MseI	TTAA	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	109, 130
NdeII	GATC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	46, 186
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	261
PstNI	CAGNNNCTG	2 cut(s)	106, 130
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	263, 408
RsaNI	GTAC	2 cut(s)	262, 407
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	10, 57, 114, 423
SfcI	CTRYAG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	117, 198
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	189
TaqI	TCGA	2 cut(s)	44, 246
TasI	AATT	2 cut(s)	117, 198
TfiI	GAWTC	2 cut(s)	46, 186
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	111, 391
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	2 cut(s)	111, 391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.