Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005178

Physical Location & Seq

Genomic Coordinates Forward (+)

32154540 .. 32157275

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32960.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCGGAGAAAGGAGGAAAGGGGTTTTCTTTGCCTAAACCTTCGCTGAAATCTACCCCTCCCAGCTCAAAAGATGGTAAGGATGATAGCTCGACAAAGTCCAAGAAGGGAAGACGAGTTCAGTTCGATTCTGAAGGTTCCCGGGAACCCAAATCAAACTTTTCGTCAAAATTTTATCGCCCAGCTGCTGCTTCAGGGAAAGCTGATTGGGGCAAGGGGGGAAAAGGAGACACGGTCGCAAATGCTAAAAAGAAAGAACCACAGCCACTGGAGCTCAAAATTGAGCAGGAACTTCCGAAGAGTGTCAAATGTATGATGGATTGTGAGGCTGCCGATATATTACAAGGCATCCAGGAGCAGATGGTCATGTTGTCTAAAGATCCTACTATTAAAATCCCTATATCATTCGACAAAGGACTGCAGTATGCCAACAGCACCAGCCGTTATACACATCCCCAATCTGGGAGACACGTTCTTGAGACTCTAAAAAAATATGGTGTCAAAGATGGAGAGATATGTGTGATTGCCAATGTTTGTCCAGAAACCACTGATGAAGTTTTTGCTTTAGTACCATCCTTGAAGGCTAAGAGAAGCACGCTCAGCCAACCACTAAAAGATGTTTTAAGTGAGCTGACGAGGTTTAAAAGGGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb4

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

9.49

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005178)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201 FvH4_3g00201
malus_domestica	MD05G1363300.v1.1 MD10G1340900.v1.1
prunus_persica	Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G002300_v2.0.a1 Prupe.4G017900_v2.0.a1 Prupe.4G017900_v2.0.a1
pyrus_communis	pycom05g32960 pycom10g29050
rosa_chinensis	RchiOBHm_Chr5g0000271
rosa_laevigata	RLG00000030855
rosa_rugosa	Rorug04G0382900 Rorug04G0383000
rosa_samantha	Rh5AG002000 Rh5BG003400 Rh5CG002300 Rh5DG002300
rosa_wichuraiana	Rw5G000250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	2 cut(s)	153, 177
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	2 cut(s)	461, 462
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	351
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	6 cut(s)	66, 90, 185, 203, 274, 631
AluI	AGCT	6 cut(s)	66, 90, 185, 203, 274, 631
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	222, 460, 473
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	2 cut(s)	188, 268
Ama87I	CYCGRG	1 cut(s)	141
ApeKI	GCWGC	3 cut(s)	185, 188, 329
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AsuC2I	CCSGG	2 cut(s)	142, 143
AvaI	CYCGRG	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	172, 175, 316
BccI	CCATC	5 cut(s)	68, 310, 355, 500, 580
BceAI	ACGGC	1 cut(s)	426
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	2 cut(s)	142, 143
BcoDI	GTCTC	3 cut(s)	222, 460, 473
BfmI	CTRYAG	1 cut(s)	419
BisI	GCNGC	3 cut(s)	186, 189, 330
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	3 cut(s)	187, 190, 331
Bme1390I	CCNGG	3 cut(s)	142, 143, 353
BmeT110I	CYCGRG	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	139, 147
BmrFI	CCNGG	3 cut(s)	142, 143, 353
BmsI	GCATC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	142, 143
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	461, 462
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	4 cut(s)	88, 348, 451, 572
BseLI	CCNNNNNNNGG	2 cut(s)	461, 462
BseMII	CTCAG	1 cut(s)	613
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	172, 175, 316
BseYI	CCCAGC	2 cut(s)	62, 181
Bsh1285I	CGRYCG	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	461, 462
BsmAI	GTCTC	3 cut(s)	222, 460, 473
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	379
Bsp1720I	GCTNAGC	1 cut(s)	599
BspCNI	CTCAG	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	139, 147
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	2 cut(s)	585, 599
BstF5I	GGATG	4 cut(s)	88, 348, 451, 572
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	3 cut(s)	222, 460, 473
BstMBI	GATC	1 cut(s)	379
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 600
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	140, 141, 351
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	172, 175, 316
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BtsCI	GGATG	4 cut(s)	88, 348, 451, 572
BtsIMutI	CAGTG	2 cut(s)	266, 546
Cac8I	GCNNGC	1 cut(s)	596
CaiI	CAGNNNCTG	2 cut(s)	188, 268
Cfr9I	CCCGGG	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	1 cut(s)	367
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	2 cut(s)	585, 599
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraI	TTTAAA	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	2 cut(s)	153, 177
Eco88I	CYCGRG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	1 cut(s)	370
FaiI	YATR	9 cut(s)	314, 338, 368, 401, 426, 447, 495, 517, 655
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	186, 189, 330
FokI	GGATG	4 cut(s)	95, 335, 438, 559
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	186, 189, 330
GluI	GCNGC	3 cut(s)	186, 189, 330
GsaI	CCCAGC	2 cut(s)	66, 185
GsuI	CTGGAG	1 cut(s)	290
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	2 cut(s)	128, 481
HpaII	CCGG	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	7, 133, 297
Hpy188III	TCNNGA	2 cut(s)	476, 539
HpyAV	CCTTC	4 cut(s)	51, 100, 128, 574
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 600
HpyF3I	CTNAG	2 cut(s)	585, 599
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	271, 355
Lsp1109I	GCAGC	3 cut(s)	172, 175, 316
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	1 cut(s)	471
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	123, 310
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	170, 279
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	4 cut(s)	8, 69, 319, 630
MseI	TTAA	3 cut(s)	390, 623, 642
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	142, 143, 353
MvaI	CCWGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	271, 600
NciI	CCSGG	2 cut(s)	142, 143
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	139, 147
PfeI	GAWTC	1 cut(s)	128
PflFI	GACNNNGTC	2 cut(s)	97, 233
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	187, 190, 331
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	351
PspFI	CCCAGC	2 cut(s)	62, 181
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	139, 147
PstI	CTGCAG	1 cut(s)	423
PstNI	CAGNNNCTG	2 cut(s)	188, 268
PsuI	RGATCY	1 cut(s)	379
PsyI	GACNNNGTC	2 cut(s)	97, 233
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	390, 623, 642
SatI	GCNGC	3 cut(s)	186, 189, 330
Sau3AI	GATC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	142, 143, 353
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	419
SmaI	CCCGGG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	170, 279
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	140, 141, 351
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	3 cut(s)	92, 126, 408
TasI	AATT	2 cut(s)	170, 279
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	390, 623, 642
Tru9I	TTAA	3 cut(s)	390, 623, 642
TscAI	CASTG	2 cut(s)	273, 553
TseI	GCWGC	3 cut(s)	185, 188, 329
TspDTI	ATGAA	1 cut(s)	567
TspMI	CCCGGG	1 cut(s)	141
TspRI	CASTG	2 cut(s)	273, 553
Tth111I	GACNNNGTC	2 cut(s)	97, 233
XapI	RAATTY	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.