Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008054

Physical Location & Seq

Genomic Coordinates Forward (+)

5828891 .. 5831154

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G110100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGGAAAATAAGCTACAAGAAGCTAAAAGGAAGCCAAAACCTAAGGCAACGTCTCGTATTGTCTCTGCTTTCGTCTACACCGGTTCATATCGAGGACATACATGCAGAGGAGACGTGGCCTGGTCTCCGTCCTCACGAGGTCTCCTTCATCCGCTTGCTCGAGAAGGTCTGCGATGACTGCTCCGTCGAAATCAACGATACTGGCACGAAATTGAAGTTCAAGCCGGGGATCGTGATGGGCGGGAGGAATCTGGTGCACGAATGCTCTCTGAGTCGGGCTATTGGTTATTACTTGGAGCCATTGATTGTGCTTGGTCTCTTTGCCAAAAAACCCCTGAACATTACGCTTAAAGGAATTACAAATGATTCAAAGGACCCATCTGTTGATACATTCCGGTCTACTACCTTGCCCATGTTAAAACACTTTGGAGTTCCCTCAGAAGGGTTGGACCTAGAAATACTGAGTCGTGGATCTGCTCCTCAAGGAGGTGGTGAGGTGTTGTTGTCAGTTCCGGTTGTTCAAAGTCTAACAGCAGTTACCTGGACTGATGAGGGGATGGTTAAGAGGATTAGAGGGATTACATTCTCTACAAGAGTGGCTGTGCAGTTTGAAAATACCATGGTATATGCAGCTCGTGGAATCTTTAATCCCTTTCTCCCAGATGTTCACATATTTACCGACCATAGACAGGGCGCGCAAGCTGGAAAATCACCTGGTTATGGAATTTCATTGGTTGCGGAAACAACTTCTGGTTGCTGTATCTCTACTGATACAGCAGTTTCCTATTCACGTCAGGAAGAAACAGCTGAGCTTGAAGATGAGGAGAAGAAAGAGCTGATGTCTCCTGAGGACGTTGGTGTGCAAATGGCTACTGTTCTGCTCGGGGAGATTGAGCAGGGTGGAGTGGTAGATTCAACACACCAGGGTTTGTTGTTTCTTCTCTGTGCATTATGTCCACAAGATGTTTCAAAGGTTCGTGTTGGAAAGCTTTCTCCTTACGGGATAGAAACTCTCAGAAACATCAAAGATTTTCTCGGAGTTACATTTGTCATCAAACCTGACCCATCCACAGGGACTGTTATACTTAAGTGTGTGGGCTCTGGGTTTAGGAACCTATCTAGAAGGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RTC RTC_insert

Protein Analysis

379

Amino Acids

41.24

Weight (kDa)

6.47

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22100
fragaria_vesca	FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140
malus_domestica	MD05G1254500.v1.1 MD10G1234700.v1.1
prunus_persica	Prupe.4G110100_v2.0.a1
pyrus_communis	pycom05g23230 pycom10g19650
rosa_chinensis	RchiOBHm_Chr5g0019871
rosa_laevigata	RLG00000032480
rosa_multiflora	Rmu_sc0000344.1_g000019 Rmu_sc0001319.1_g000005
rosa_roxburghii	Rroxscaffold_1G00058300
rosa_rugosa	Rorug05G0054600.1 Rorug05G0054700
rosa_samantha	Rh5AG144800 Rh5BG144000 Rh5CG155700 Rh5DG143700
rosa_wichuraiana	Rw5G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccI	GTMKAC	2 cut(s)	77, 401
AccII	CGCG	1 cut(s)	698
AciI	CCGC	3 cut(s)	154, 243, 740
AclWI	GGATC	2 cut(s)	239, 481
AcsI	RAATTY	1 cut(s)	726
AfiI	CCNNNNNNNGG	6 cut(s)	443, 444, 488, 691, 722, 1073
AflII	CTTAAG	1 cut(s)	1088
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	8 cut(s)	217, 223, 372, 524, 614, 818, 918, 972
AjiI	CACGTC	2 cut(s)	117, 794
AjnI	CCWGG	4 cut(s)	121, 542, 715, 924
AluBI	AGCT	8 cut(s)	15, 25, 635, 704, 809, 814, 838, 991
AluI	AGCT	8 cut(s)	15, 25, 635, 704, 809, 814, 838, 991
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	7 cut(s)	59, 69, 107, 131, 148, 323, 849
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	239, 481
AlwNI	CAGNNNCTG	1 cut(s)	1079
Ama87I	CYCGRG	2 cut(s)	161, 884
AoxI	GGCC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	726
AsiGI	ACCGGT	1 cut(s)	82
Asp700I	GAANNNNTTC	2 cut(s)	991, 1129
AspLEI	GCGC	2 cut(s)	698, 700
AspS9I	GGNCC	2 cut(s)	376, 451
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	506, 705
AvaI	CYCGRG	2 cut(s)	161, 884
AvaII	GGWCC	2 cut(s)	376, 451
AxyI	CCTNAGG	2 cut(s)	44, 849
BaeGI	GKGCMC	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BanII	GRGCYC	1 cut(s)	1103
BauI	CACGAG	2 cut(s)	137, 636
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	4 cut(s)	232, 388, 553, 1075
BciT130I	CCWGG	4 cut(s)	123, 544, 717, 926
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	7 cut(s)	59, 69, 107, 131, 148, 323, 849
BfaI	CTAG	2 cut(s)	455, 1122
BfrI	CTTAAG	1 cut(s)	1088
BisI	GCNGC	1 cut(s)	633
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	5 cut(s)	123, 228, 544, 717, 926
Bme18I	GGWCC	2 cut(s)	376, 451
BmeT110I	CYCGRG	2 cut(s)	161, 884
BmgBI	CACGTC	2 cut(s)	117, 794
BmgT120I	GGNCC	2 cut(s)	376, 451
BmiI	GGNNCC	3 cut(s)	300, 378, 1115
BmrFI	CCNGG	5 cut(s)	123, 228, 544, 717, 926
Bpu1102I	GCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	228
BsaI	GGTCTC	3 cut(s)	131, 148, 323
BsaJI	CCNNGG	3 cut(s)	227, 621, 925
BsaWI	WCCGGW	3 cut(s)	82, 396, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	6 cut(s)	443, 444, 488, 691, 722, 1073
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	208
Bse21I	CCTNAGG	2 cut(s)	44, 849
BseBI	CCWGG	4 cut(s)	123, 544, 717, 926
BseDI	CCNNGG	3 cut(s)	227, 621, 925
BseGI	GGATG	3 cut(s)	150, 564, 1067
BseLI	CCNNNNNNNGG	6 cut(s)	443, 444, 488, 691, 722, 1073
BseMII	CTCAG	6 cut(s)	263, 453, 455, 801, 840, 1030
BseNI	ACTGG	1 cut(s)	208
BsePI	GCGCGC	1 cut(s)	696
BseRI	GAGGAG	3 cut(s)	125, 471, 839
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	644
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	121
BshTI	ACCGGT	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	2 cut(s)	161, 884
BsiSI	CCGG	4 cut(s)	83, 227, 397, 515
BslFI	GGGAC	1 cut(s)	1090
BslI	CCNNNNNNNGG	6 cut(s)	443, 444, 488, 691, 722, 1073
BsmAI	GTCTC	7 cut(s)	59, 69, 107, 131, 148, 323, 849
BsmBI	CGTCTC	2 cut(s)	59, 107
BsmFI	GGGAC	1 cut(s)	1090
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	3 cut(s)	131, 148, 323
BsoBI	CYCGRG	2 cut(s)	161, 884
Bsp1286I	GDGCHC	2 cut(s)	261, 1103
Bsp143I	GATC	2 cut(s)	231, 473
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	3 cut(s)	154, 243, 740
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	6 cut(s)	264, 452, 456, 802, 841, 1029
BspFNI	CGCG	1 cut(s)	698
BspHI	TCATGA	1 cut(s)	1133
BspLI	GGNNCC	3 cut(s)	300, 378, 1115
BspPI	GGATC	2 cut(s)	239, 481
BspTI	CTTAAG	1 cut(s)	1088
BspTNI	GGTCTC	3 cut(s)	131, 148, 323
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	227, 621, 925
BssHII	GCGCGC	1 cut(s)	696
BssMI	GATC	2 cut(s)	231, 473
BssSI	CACGAG	2 cut(s)	137, 636
BssT1I	CCWWGG	1 cut(s)	621
Bst2BI	CACGAG	2 cut(s)	137, 636
Bst2UI	CCWGG	4 cut(s)	123, 544, 717, 926
Bst4CI	ACNGT	2 cut(s)	877, 1081
BstAFI	CTTAAG	1 cut(s)	1088
BstC8I	GCNNGC	3 cut(s)	158, 698, 702
BstDEI	CTNAG	7 cut(s)	44, 272, 439, 464, 810, 849, 1016
BstDSI	CCRYGG	1 cut(s)	621
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstF5I	GGATG	3 cut(s)	150, 564, 1067
BstFNI	CGCG	1 cut(s)	698
BstHHI	GCGC	2 cut(s)	698, 700
BstKTI	GATC	2 cut(s)	234, 476
BstMAI	GTCTC	7 cut(s)	59, 69, 107, 131, 148, 323, 849
BstMBI	GATC	2 cut(s)	231, 473
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	4 cut(s)	123, 544, 717, 926
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	5 cut(s)	121, 226, 542, 715, 924
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
Bsu36I	CCTNAGG	2 cut(s)	44, 849
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	189
BtrI	CACGTC	2 cut(s)	117, 794
BtsCI	GGATG	3 cut(s)	150, 564, 1067
Cac8I	GCNNGC	3 cut(s)	158, 698, 702
CaiI	CAGNNNCTG	1 cut(s)	1079
CciI	TCATGA	1 cut(s)	1133
CfoI	GCGC	2 cut(s)	698, 700
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	376, 451
CsiI	ACCWGGT	1 cut(s)	715
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	4 cut(s)	104, 415, 622, 1134
DdeI	CTNAG	7 cut(s)	44, 272, 439, 464, 810, 849, 1016
DpnI	GATC	2 cut(s)	233, 475
DpnII	GATC	2 cut(s)	231, 473
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	1103
Eco31I	GGTCTC	3 cut(s)	131, 148, 323
Eco47I	GGWCC	2 cut(s)	376, 451
Eco81I	CCTNAGG	2 cut(s)	44, 849
Eco88I	CYCGRG	2 cut(s)	161, 884
EcoNI	CCTNNNNNAGG	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	4 cut(s)	121, 542, 715, 924
EcoT14I	CCWWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	1103
ErhI	CCWWGG	1 cut(s)	621
Esp3I	CGTCTC	2 cut(s)	59, 107
FaeI	CATG	4 cut(s)	107, 418, 625, 1137
FaqI	GGGAC	1 cut(s)	1090
FatI	CATG	4 cut(s)	103, 414, 621, 1133
FauI	CCCGC	1 cut(s)	236
FblI	GTMKAC	2 cut(s)	77, 401
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	3 cut(s)	137, 571, 1054
FriOI	GRGCYC	1 cut(s)	1103
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	2 cut(s)	455, 1122
GlaI	GCGC	2 cut(s)	697, 699
GluI	GCNGC	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	4 cut(s)	83, 227, 397, 515
HhaI	GCGC	2 cut(s)	698, 700
Hin1II	CATG	4 cut(s)	107, 418, 625, 1137
Hin6I	GCGC	2 cut(s)	696, 698
HinP1I	GCGC	2 cut(s)	696, 698
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	6 cut(s)	250, 274, 368, 466, 642, 914
HpaII	CCGG	4 cut(s)	83, 227, 397, 515
HphI	GGTGA	2 cut(s)	506, 705
Hpy166II	GTNNAC	5 cut(s)	78, 259, 402, 670, 959
Hpy188I	TCNGA	4 cut(s)	273, 442, 1019, 1040
Hpy188III	TCNNGA	7 cut(s)	137, 163, 235, 797, 848, 1122, 1134
Hpy8I	GTNNAC	5 cut(s)	78, 259, 402, 670, 959
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	157, 160, 437, 1119
HpyCH4III	ACNGT	2 cut(s)	877, 1081
HpyCH4IV	ACGT	4 cut(s)	52, 116, 793, 855
HpyCH4V	TGCA	6 cut(s)	107, 259, 607, 632, 865, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	7 cut(s)	44, 272, 439, 464, 810, 849, 1016
HpySE526I	ACGT	4 cut(s)	52, 116, 793, 855
Hsp92II	CATG	4 cut(s)	107, 418, 625, 1137
HspAI	GCGC	2 cut(s)	696, 698
Kzo9I	GATC	2 cut(s)	231, 473
LmnI	GCTCC	3 cut(s)	188, 298, 484
Lsp1109I	GCAGC	1 cut(s)	644
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	2 cut(s)	455, 1122
MaeII	ACGT	4 cut(s)	52, 116, 793, 855
MaeIII	GTNAC	2 cut(s)	538, 1042
MalI	GATC	2 cut(s)	233, 475
MboI	GATC	2 cut(s)	231, 473
MboII	GAAGA	4 cut(s)	812, 830, 841, 932
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	261, 1103
MluCI	AATT	3 cut(s)	212, 357, 726
MlyI	GAGTC	2 cut(s)	283, 475
MmeI	TCCRAC	2 cut(s)	429, 964
MroXI	GAANNNNTTC	2 cut(s)	991, 1129
MseI	TTAA	5 cut(s)	351, 419, 564, 648, 1089
MspA1I	CMGCKG	1 cut(s)	809
MspCI	CTTAAG	1 cut(s)	1088
MspI	CCGG	4 cut(s)	83, 227, 397, 515
MspR9I	CCNGG	5 cut(s)	123, 228, 544, 717, 926
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	4 cut(s)	123, 544, 717, 926
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	2 cut(s)	231, 473
NlaIII	CATG	4 cut(s)	107, 418, 625, 1137
NlaIV	GGNNCC	3 cut(s)	300, 378, 1115
NspI	RCATGY	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	1133
PauI	GCGCGC	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	991, 1129
PfeI	GAWTC	4 cut(s)	250, 368, 642, 914
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	634
PleI	GAGTC	2 cut(s)	282, 474
PpsI	GAGTC	2 cut(s)	282, 474
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	4 cut(s)	121, 542, 715, 924
PspGI	CCWGG	4 cut(s)	121, 542, 715, 924
PspN4I	GGNNCC	3 cut(s)	300, 378, 1115
PspPI	GGNCC	2 cut(s)	376, 451
PspPPI	RGGWCCY	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	1 cut(s)	473
PteI	GCGCGC	1 cut(s)	696
PvuII	CAGCTG	1 cut(s)	809
SaqAI	TTAA	5 cut(s)	351, 419, 564, 648, 1089
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	2 cut(s)	231, 473
Sau96I	GGNCC	2 cut(s)	376, 451
SchI	GAGTC	2 cut(s)	283, 475
ScrFI	CCNGG	5 cut(s)	123, 228, 544, 717, 926
SduI	GDGCHC	2 cut(s)	261, 1103
SexAI	ACCWGGT	1 cut(s)	715
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	2 cut(s)	376, 451
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	3 cut(s)	161, 483, 1088
SmoI	CTYRAG	3 cut(s)	161, 483, 1088
Sse9I	AATT	3 cut(s)	212, 357, 726
SsiI	CCGC	3 cut(s)	154, 243, 740
SspMI	CTAG	2 cut(s)	455, 1122
StyD4I	CCNGG	5 cut(s)	121, 226, 542, 715, 924
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	877, 1081
TaiI	ACGT	4 cut(s)	55, 119, 796, 858
TaqI	TCGA	3 cut(s)	93, 162, 189
TasI	AATT	3 cut(s)	212, 357, 726
TfiI	GAWTC	4 cut(s)	250, 368, 642, 914
Tru1I	TTAA	5 cut(s)	351, 419, 564, 648, 1089
Tru9I	TTAA	5 cut(s)	351, 419, 564, 648, 1089
TseI	GCWGC	1 cut(s)	632
TspDTI	ATGAA	4 cut(s)	77, 139, 720, 1122
TspGWI	ACGGA	2 cut(s)	119, 175
Vha464I	CTTAAG	1 cut(s)	1088
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	376, 451
XagI	CCTNNNNNAGG	1 cut(s)	486
XapI	RAATTY	1 cut(s)	726
XbaI	TCTAGA	1 cut(s)	1121
XceI	RCATGY	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	77, 401
XmnI	GAANNNNTTC	2 cut(s)	991, 1129
XspI	CTAG	2 cut(s)	455, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.