Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000344.1

Orthogroup ID

OG0008054

Physical Location & Seq

Genomic Coordinates Reverse (-)

56666 .. 59283

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000344.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgggaaagtcgagctacaagaggctctctggaagccagaacctaagacaacggcttgtattggctacactctcggccaccccggttttgattgaggacatacgcactgatgatacgtggcctggtttgcgtcgtcatgaagtatccttcctccgcttgctcgagaagatttgtgatgactgtgctgttgaaatcaacgagaccggcacaaaattgaagttcaagccagggatagtgatgggcgggaggaatctggtgcacgactgtggtcttactcggtctattggctatttcttggagcctttgattgtgctcggaatcacaaatgattcaaaggacccatctgttgatacctttcggtctacaacctttcccatgttaaaacgctttggagttccctcagaagggttggagctaaaaatagagaatcgtggatctcctcctctgggaggtggtgaagtgcttttggcaattccggttgttcaaagtctcactgcagtaaagtggactgatgaggggatggttaagaggatcagaggggttacgttctcaacaagagtgtcttcacagtttgaaaataccatggtatttgcagctcgtggaatctttaattccttccttccagatgttcacatattcactgaccatagagctggtgttcatgctggaaattcacctggttatggaatttcactggttgcggaaacaacttctggttgctgtctctctgctgatacagcaatttcttatgcacatgaggaagagacagctggacttgaagatgagaagaaagagctgatgcctccagatgaagttggtgtgcaaattgcttctgttctgcttggagagatcgagcagggtggagtggtagattcaacacaccagggtttgttgtttcttctttgtgcactatgtccacaagatgtttcaaaagttcgggttggaaggctctctcctaatggaatagaaacactccgacacatcaaagattttcttggagttcaatttgtgattacagctgacccaaccaccggaactgttatgctcaagtgtgttggctgtggtcttaagaacctatctagaaaggtttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RTC RTC_insert

Protein Analysis

364

Amino Acids

39.49

Weight (kDa)

6.27

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22100
fragaria_vesca	FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140
malus_domestica	MD05G1254500.v1.1 MD10G1234700.v1.1
prunus_persica	Prupe.4G110100_v2.0.a1
pyrus_communis	pycom05g23230 pycom10g19650
rosa_chinensis	RchiOBHm_Chr5g0019871
rosa_laevigata	RLG00000032480
rosa_multiflora	Rmu_sc0000344.1_g000019 Rmu_sc0001319.1_g000005
rosa_roxburghii	Rroxscaffold_1G00058300
rosa_rugosa	Rorug05G0054600.1 Rorug05G0054700
rosa_samantha	Rh5AG144800 Rh5BG144000 Rh5CG155700 Rh5DG143700
rosa_wichuraiana	Rw5G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	362
AciI	CCGC	3 cut(s)	154, 243, 701
AclWI	GGATC	2 cut(s)	442, 539
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	670, 687
AfiI	CCNNNNNNNGG	6 cut(s)	404, 405, 446, 449, 683, 1031
AflII	CTTAAG	1 cut(s)	1067
AjnI	CCWGG	4 cut(s)	121, 226, 676, 882
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	7 cut(s)	15, 415, 596, 653, 770, 796, 1019
AluI	AGCT	7 cut(s)	15, 415, 596, 653, 770, 796, 1019
Alw21I	GWGCWC	3 cut(s)	261, 315, 910
Alw26I	GTCTC	4 cut(s)	194, 494, 728, 758
Alw44I	GTGCAC	2 cut(s)	257, 906
AlwI	GGATC	2 cut(s)	442, 539
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	75, 119
ApaLI	GTGCAC	2 cut(s)	257, 906
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	670, 687
Asp700I	GAANNNNTTC	1 cut(s)	1087
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	467, 666
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	2 cut(s)	261, 910
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	3 cut(s)	261, 315, 910
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	3 cut(s)	232, 349, 514
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	4 cut(s)	123, 228, 678, 884
BciVI	GTATCC	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	194, 494, 728, 758
BfaI	CTAG	1 cut(s)	1080
BfmI	CTRYAG	1 cut(s)	495
BfrI	CTTAAG	1 cut(s)	1067
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	5 cut(s)	83, 123, 228, 678, 884
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	300, 339
BmrFI	CCNGG	5 cut(s)	83, 123, 228, 678, 884
BmsI	GCATC	1 cut(s)	789
BoxI	GACNNNNGTC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	81, 227, 582, 883
BsaWI	WCCGGW	2 cut(s)	475, 1031
Bsc4I	CCNNNNNNNGG	6 cut(s)	404, 405, 446, 449, 683, 1031
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	699
BseBI	CCWGG	4 cut(s)	123, 228, 678, 884
BseDI	CCNNGG	4 cut(s)	81, 227, 582, 883
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	6 cut(s)	404, 405, 446, 449, 683, 1031
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	2 cut(s)	429, 432
BseSI	GKGCMC	2 cut(s)	261, 910
BseXI	GCAGC	1 cut(s)	605
BshFI	GGCC	2 cut(s)	77, 121
BsiHKAI	GWGCWC	3 cut(s)	261, 315, 910
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	4 cut(s)	83, 204, 476, 1032
BslI	CCNNNNNNNGG	6 cut(s)	404, 405, 446, 449, 683, 1031
BsmAI	GTCTC	4 cut(s)	194, 494, 728, 758
BsnI	GGCC	2 cut(s)	77, 121
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	261, 315, 910
Bsp143I	GATC	3 cut(s)	434, 531, 849
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	3 cut(s)	154, 243, 701
BspANI	GGCC	2 cut(s)	77, 121
BspCNI	CTCAG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	300, 339
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	2 cut(s)	442, 539
BspTI	CTTAAG	1 cut(s)	1067
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	81, 227, 582, 883
BssMI	GATC	3 cut(s)	434, 531, 849
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	4 cut(s)	123, 228, 678, 884
Bst4CI	ACNGT	4 cut(s)	182, 266, 570, 1039
Bst6I	CTCTTC	1 cut(s)	756
BstAFI	CTTAAG	1 cut(s)	1067
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	44, 400
BstDSI	CCRYGG	1 cut(s)	582
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	525
BstKTI	GATC	3 cut(s)	437, 534, 852
BstMAI	GTCTC	4 cut(s)	194, 494, 728, 758
BstMBI	GATC	3 cut(s)	434, 531, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 737
BstNI	CCWGG	4 cut(s)	123, 228, 678, 884
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSCI	CCNGG	5 cut(s)	81, 121, 226, 676, 882
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	2 cut(s)	261, 910
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	77, 121
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	4 cut(s)	105, 492, 639, 692
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	676
CviAII	CATG	5 cut(s)	137, 376, 583, 662, 755
DdeI	CTNAG	2 cut(s)	44, 400
DpnI	GATC	3 cut(s)	436, 533, 851
DpnII	GATC	3 cut(s)	434, 531, 849
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	4 cut(s)	121, 226, 676, 882
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	5 cut(s)	140, 379, 586, 665, 758
FalI	AAGNNNNNCTT	4 cut(s)	547, 579, 978, 1010
FatI	CATG	5 cut(s)	136, 375, 582, 661, 754
FauI	CCCGC	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	1080
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	77, 121
HapII	CCGG	4 cut(s)	83, 204, 476, 1032
HgaI	GACGC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	140, 379, 586, 665, 758
HinfI	GANTC	6 cut(s)	250, 318, 329, 427, 603, 872
HpaII	CCGG	4 cut(s)	83, 204, 476, 1032
HphI	GGTGA	2 cut(s)	467, 666
Hpy166II	GTNNAC	6 cut(s)	259, 363, 507, 631, 908, 917
Hpy188I	TCNGA	4 cut(s)	317, 403, 536, 977
Hpy188III	TCNNGA	7 cut(s)	30, 137, 163, 623, 806, 1080, 1092
Hpy8I	GTNNAC	6 cut(s)	259, 363, 507, 631, 908, 917
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	5 cut(s)	157, 398, 625, 629, 939
HpyCH4III	ACNGT	4 cut(s)	182, 266, 570, 1039
HpyCH4IV	ACGT	2 cut(s)	116, 545
HpyCH4V	TGCA	6 cut(s)	259, 497, 593, 752, 823, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 737
HpyF3I	CTNAG	2 cut(s)	44, 400
HpySE526I	ACGT	2 cut(s)	116, 545
Hsp92II	CATG	5 cut(s)	140, 379, 586, 665, 758
Kzo9I	GATC	3 cut(s)	434, 531, 849
LmnI	GCTCC	2 cut(s)	298, 412
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	1 cut(s)	789
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	1 cut(s)	1080
MaeII	ACGT	2 cut(s)	116, 545
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	3 cut(s)	436, 533, 851
MboI	GATC	3 cut(s)	434, 531, 849
MboII	GAAGA	6 cut(s)	178, 555, 773, 791, 799, 890
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	3 cut(s)	261, 315, 910
MluCI	AATT	8 cut(s)	212, 471, 610, 670, 687, 741, 825, 1004
MmeI	TCCRAC	3 cut(s)	390, 922, 1000
MroXI	GAANNNNTTC	1 cut(s)	1087
MseI	TTAA	4 cut(s)	380, 525, 609, 1068
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	770, 1019
MspCI	CTTAAG	1 cut(s)	1067
MspI	CCGG	4 cut(s)	83, 204, 476, 1032
MspR9I	CCNGG	5 cut(s)	83, 123, 228, 678, 884
MvaI	CCWGG	4 cut(s)	123, 228, 678, 884
MwoI	GCNNNNNNNGC	2 cut(s)	127, 737
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	434, 531, 849
NlaIII	CATG	5 cut(s)	140, 379, 586, 665, 758
NlaIV	GGNNCC	2 cut(s)	300, 339
NmeAIII	GCCGAG	1 cut(s)	53
OliI	CACNNNNGTG	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	1087
PfeI	GAWTC	6 cut(s)	250, 318, 329, 427, 603, 872
PkrI	GCNGC	1 cut(s)	595
Ppu21I	YACGTR	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	337
PshAI	GACNNNNGTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	4 cut(s)	121, 226, 676, 882
PspGI	CCWGG	4 cut(s)	121, 226, 676, 882
PspN4I	GGNNCC	2 cut(s)	300, 339
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	434
PvuII	CAGCTG	2 cut(s)	770, 1019
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	380, 525, 609, 1068
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	434, 531, 849
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	5 cut(s)	83, 123, 228, 678, 884
SduI	GDGCHC	3 cut(s)	261, 315, 910
SexAI	ACCWGGT	1 cut(s)	676
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	3 cut(s)	161, 1046, 1067
SmoI	CTYRAG	3 cut(s)	161, 1046, 1067
Sse9I	AATT	8 cut(s)	212, 471, 610, 670, 687, 741, 825, 1004
SsiI	CCGC	3 cut(s)	154, 243, 701
SspMI	CTAG	1 cut(s)	1080
StyD4I	CCNGG	5 cut(s)	81, 121, 226, 676, 882
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	4 cut(s)	182, 266, 570, 1039
TaiI	ACGT	2 cut(s)	119, 548
TaqI	TCGA	3 cut(s)	11, 162, 852
TaqII	GACCGA	2 cut(s)	267, 348
TasI	AATT	8 cut(s)	212, 471, 610, 670, 687, 741, 825, 1004
TfiI	GAWTC	6 cut(s)	250, 318, 329, 427, 603, 872
Tru1I	TTAA	4 cut(s)	380, 525, 609, 1068
Tru9I	TTAA	4 cut(s)	380, 525, 609, 1068
TscAI	CASTG	4 cut(s)	112, 499, 646, 699
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	3 cut(s)	153, 650, 825
TspRI	CASTG	4 cut(s)	112, 499, 646, 699
Vha464I	CTTAAG	1 cut(s)	1067
VneI	GTGCAC	2 cut(s)	257, 906
VpaK11BI	GGWCC	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	2 cut(s)	670, 687
XbaI	TCTAGA	1 cut(s)	1079
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	1087
XspI	CTAG	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.