Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008054

Physical Location & Seq

Genomic Coordinates Reverse (-)

25176189 .. 25178582

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23230.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGGAAAGCAAGCTACAAGAGGTTAACCGGAAGCCAAAACCTAAGGCAACGGCTCGTACTGGCGGCGGTTGCGTCCACACCGGTTCTTATCGAGGACATTCGCGCAGAGGAGACATGGCCCGGCCTCCGCCCCCACGAGGTCTCCTTCCTCCGCCTGCTCGAGAAGGTCTCCGATGACTGCGTCGTCGAAATCAACGAGACTGGTACAAAATTGAAGTTCAAGCCGGGGATAGTGATGGGTGGGAGGAATTTGGTGCACGATTGCGGGCTCAGTCGGGCGGTTGGGTATTTCTTGGAGCCATTGATTGTGCTTGGTCTCTTTGCCAAAAAGCCGCTTACCATTACACTTAAAGGAATTACAAATGATTCCGAGGACCCATCTGTTGATACATTCCAGTCTGCTACTTTGCCCATGTTAAAACACTTTGGAGTTCCCTCAGAAGGGCTAGACCTCAAAATACAGAGTCGTGGATCTGCTCCTCAAGGTGGTGGCGAAGTGTTCTTGTCAATTCCAATTGTTCAAAGTCTAACTGCAGTCAACTGGACTGATGAAGGGATGGTTAAGAGGATTAGAGGGACTACATTCTCAACAAGAGTGTCCACACAGTTTGAAAATACCATGGTGTATGCCGCTCGTGGAATCTTTAATCTCTTACTCCCAGATGTTCACATATTTACAGACCATAGAAGTGGCCCACAAGCTGGACATTCACCTGGTTATGGAATTTCACTGGTTGCGGAAACAACTTCTGGTTGCTGTATCTCTGCTGATACAGCAATTTCTTATTCTCGAGGGGAAGATACAGCTGAACTTGAAGATGAGGGGAAGAAAGAGCTTATGCCTCCAGAGGATGTTGGTGTGCAAATTGCTAATGTTCTGCTTGGGGAGATTGAGCAGGGTGGAGTGGTAGATTCAACACATCAGGGCTTTTTGTTTCTTCTCTGTGCACTATGTCCACAAGATGTTTCAAAGGTTCGTGTTGGAAAGCTCTCCCCTCACGGAATAGAAACACTCAGAAACATCAAAGACTTTCTCGGAGTTAAATTTGTCATTAAGCCCGACCCATCTACAAGGACCGTCATACTTAGGTGTGTTGGCTCTGGGTTAAGGAACCTTTCAAGAAGGATCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000469 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RTC RTC_insert

Protein Analysis

379

Amino Acids

41.0

Weight (kDa)

6.72

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22100
fragaria_vesca	FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140 FvH4_3g12140
malus_domestica	MD05G1254500.v1.1 MD10G1234700.v1.1
prunus_persica	Prupe.4G110100_v2.0.a1
pyrus_communis	pycom05g23230 pycom10g19650
rosa_chinensis	RchiOBHm_Chr5g0019871
rosa_laevigata	RLG00000032480
rosa_multiflora	Rmu_sc0000344.1_g000019 Rmu_sc0001319.1_g000005
rosa_roxburghii	Rroxscaffold_1G00058300
rosa_rugosa	Rorug05G0054600.1 Rorug05G0054700
rosa_samantha	Rh5AG144800 Rh5BG144000 Rh5CG155700 Rh5DG143700
rosa_wichuraiana	Rw5G012790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	635
AccII	CGCG	1 cut(s)	105
AciI	CCGC	9 cut(s)	65, 68, 130, 154, 267, 281, 335, 633, 740
AclWI	GGATC	2 cut(s)	481, 1136
AcsI	RAATTY	3 cut(s)	250, 726, 1046
AfaI	GTAC	2 cut(s)	60, 208
AfiI	CCNNNNNNNGG	6 cut(s)	139, 443, 444, 488, 704, 722
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	8 cut(s)	217, 223, 524, 614, 818, 918, 972, 1122
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	5 cut(s)	15, 704, 809, 838, 991
AluI	AGCT	5 cut(s)	15, 704, 809, 838, 991
Alw21I	GWGCWC	2 cut(s)	261, 952
Alw26I	GTCTC	5 cut(s)	107, 148, 175, 194, 323
Alw44I	GTGCAC	2 cut(s)	257, 948
AlwI	GGATC	2 cut(s)	481, 1136
Ama87I	CYCGRG	2 cut(s)	161, 792
AoxI	GGCC	3 cut(s)	119, 124, 694
ApaLI	GTGCAC	2 cut(s)	257, 948
ApoI	RAATTY	3 cut(s)	250, 726, 1046
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	4 cut(s)	120, 376, 695, 1077
AsuC2I	CCSGG	2 cut(s)	123, 228
AsuHPI	GGTGA	1 cut(s)	705
AvaI	CYCGRG	2 cut(s)	161, 792
AvaII	GGWCC	2 cut(s)	376, 1077
AxyI	CCTNAGG	1 cut(s)	44
BaeGI	GKGCMC	2 cut(s)	261, 952
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	3 cut(s)	137, 636, 1132
Bbv12I	GWGCWC	2 cut(s)	261, 952
BccI	CCATC	4 cut(s)	232, 388, 553, 1075
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	717
BcnI	CCSGG	2 cut(s)	123, 228
BcoDI	GTCTC	5 cut(s)	107, 148, 175, 194, 323
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	3 cut(s)	66, 335, 633
BlsI	GCNGC	3 cut(s)	67, 336, 634
Bme1390I	CCNGG	3 cut(s)	123, 228, 717
Bme18I	GGWCC	2 cut(s)	376, 1077
BmeT110I	CYCGRG	2 cut(s)	161, 792
BmgT120I	GGNCC	4 cut(s)	120, 376, 695, 1077
BmiI	GGNNCC	3 cut(s)	300, 378, 1115
BmrFI	CCNGG	3 cut(s)	123, 228, 717
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	2 cut(s)	123, 228
BsaI	GGTCTC	3 cut(s)	148, 175, 323
BsaJI	CCNNGG	3 cut(s)	227, 372, 621
BsaWI	WCCGGW	2 cut(s)	29, 82
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 443, 444, 488, 704, 722
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	5 cut(s)	66, 208, 397, 548, 738
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	227, 372, 621
BseGI	GGATG	2 cut(s)	564, 859
BseLI	CCNNNNNNNGG	6 cut(s)	139, 443, 444, 488, 704, 722
BseMII	CTCAG	3 cut(s)	286, 453, 1030
BseNI	ACTGG	5 cut(s)	66, 208, 397, 548, 738
BseRI	GAGGAG	2 cut(s)	125, 471
BseSI	GKGCMC	2 cut(s)	261, 952
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	121, 126, 696
BshTI	ACCGGT	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	261, 952
BsiHKCI	CYCGRG	2 cut(s)	161, 792
BsiSI	CCGG	4 cut(s)	30, 83, 123, 227
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	6 cut(s)	139, 443, 444, 488, 704, 722
BsmAI	GTCTC	5 cut(s)	107, 148, 175, 194, 323
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	121, 126, 696
Bso31I	GGTCTC	3 cut(s)	148, 175, 323
BsoBI	CYCGRG	2 cut(s)	161, 792
Bsp1286I	GDGCHC	3 cut(s)	261, 273, 952
Bsp143I	GATC	2 cut(s)	473, 1128
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	9 cut(s)	65, 68, 130, 154, 267, 281, 335, 633, 740
BspANI	GGCC	3 cut(s)	121, 126, 696
BspCNI	CTCAG	3 cut(s)	285, 452, 1029
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	300, 378, 1115
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	2 cut(s)	481, 1136
BspTNI	GGTCTC	3 cut(s)	148, 175, 323
BsrBI	CCGCTC	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	5 cut(s)	66, 208, 397, 548, 738
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	227, 372, 621
BssMI	GATC	2 cut(s)	473, 1128
BssSI	CACGAG	3 cut(s)	137, 636, 1132
BssT1I	CCWWGG	1 cut(s)	621
Bst2BI	CACGAG	3 cut(s)	137, 636, 1132
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	609, 1081
BstC8I	GCNNGC	3 cut(s)	13, 158, 269
BstDEI	CTNAG	5 cut(s)	44, 272, 439, 1016, 1088
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	564, 859
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	476, 1131
BstMAI	GTCTC	5 cut(s)	107, 148, 175, 194, 323
BstMBI	GATC	2 cut(s)	473, 1128
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 776
BstNI	CCWGG	1 cut(s)	717
BstSCI	CCNGG	3 cut(s)	121, 226, 715
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	2 cut(s)	261, 952
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	473, 1128
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	2 cut(s)	473, 1128
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	121, 126, 696
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	564, 859
BtsIMutI	CAGTG	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	13, 158, 269
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	120, 376, 695, 1077
CseI	GACGC	2 cut(s)	63, 172
CsiI	ACCWGGT	1 cut(s)	715
Csp6I	GTAC	2 cut(s)	59, 207
CspAI	ACCGGT	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	3 cut(s)	117, 415, 622
CviQI	GTAC	2 cut(s)	59, 207
DdeI	CTNAG	5 cut(s)	44, 272, 439, 1016, 1088
DpnI	GATC	2 cut(s)	475, 1130
DpnII	GATC	2 cut(s)	473, 1128
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	2 cut(s)	119, 143
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	3 cut(s)	148, 175, 323
Eco47I	GGWCC	2 cut(s)	376, 1077
Eco81I	CCTNAGG	1 cut(s)	44
Eco88I	CYCGRG	2 cut(s)	161, 792
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	3 cut(s)	120, 418, 625
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	116, 414, 621
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	66, 335, 633
FokI	GGATG	2 cut(s)	571, 866
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	66, 335, 633
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	66, 335, 633
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	3 cut(s)	121, 126, 696
HapII	CCGG	4 cut(s)	30, 83, 123, 227
HgaI	GACGC	2 cut(s)	63, 172
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	120, 418, 625
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	2 cut(s)	27, 541
HindII	GTYRAC	2 cut(s)	27, 541
HinfI	GANTC	4 cut(s)	368, 466, 642, 914
HpaI	GTTAAC	1 cut(s)	27
HpaII	CCGG	4 cut(s)	30, 83, 123, 227
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	8 cut(s)	27, 78, 259, 541, 603, 670, 950, 959
Hpy188I	TCNGA	5 cut(s)	175, 373, 442, 1019, 1040
Hpy188III	TCNNGA	5 cut(s)	163, 792, 848, 1122, 1134
Hpy8I	GTNNAC	8 cut(s)	27, 78, 259, 541, 603, 670, 950, 959
Hpy99I	CGWCG	2 cut(s)	188, 191
HpyAV	CCTTC	5 cut(s)	157, 160, 437, 548, 1119
HpyCH4III	ACNGT	2 cut(s)	609, 1081
HpyCH4V	TGCA	4 cut(s)	259, 536, 865, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 776
HpyF3I	CTNAG	5 cut(s)	44, 272, 439, 1016, 1088
Hsp92II	CATG	3 cut(s)	120, 418, 625
HspAI	GCGC	1 cut(s)	105
KspAI	GTTAAC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	473, 1128
LmnI	GCTCC	2 cut(s)	298, 484
MabI	ACCWGGT	1 cut(s)	715
MaeI	CTAG	1 cut(s)	449
MalI	GATC	2 cut(s)	475, 1130
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	2 cut(s)	473, 1128
MboII	GAAGA	4 cut(s)	812, 830, 841, 932
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	2 cut(s)	473, 1128
MhlI	GDGCHC	3 cut(s)	261, 273, 952
MluCI	AATT	9 cut(s)	212, 250, 357, 510, 516, 726, 780, 867, 1046
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	964
MseI	TTAA	8 cut(s)	26, 351, 419, 564, 648, 1044, 1056, 1109
MslI	CAYNNNNRTG	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	4 cut(s)	30, 83, 123, 227
MspR9I	CCNGG	3 cut(s)	123, 228, 717
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	71, 776
NciI	CCSGG	2 cut(s)	123, 228
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	2 cut(s)	473, 1128
NlaIII	CATG	3 cut(s)	120, 418, 625
NlaIV	GGNNCC	3 cut(s)	300, 378, 1115
PaeR7I	CTCGAG	2 cut(s)	161, 792
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	368, 642, 914
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	704
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	67, 336, 634
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	3 cut(s)	300, 378, 1115
PspPI	GGNCC	4 cut(s)	120, 376, 695, 1077
PspPPI	RGGWCCY	1 cut(s)	376
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	2 cut(s)	473, 1128
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	2 cut(s)	60, 208
RsaNI	GTAC	2 cut(s)	59, 207
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	8 cut(s)	26, 351, 419, 564, 648, 1044, 1056, 1109
SatI	GCNGC	3 cut(s)	66, 335, 633
Sau3AI	GATC	2 cut(s)	473, 1128
Sau96I	GGNCC	4 cut(s)	120, 376, 695, 1077
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	123, 228, 717
SduI	GDGCHC	3 cut(s)	261, 273, 952
SexAI	ACCWGGT	1 cut(s)	715
SfcI	CTRYAG	1 cut(s)	534
Sfr274I	CTCGAG	2 cut(s)	161, 792
SinI	GGWCC	2 cut(s)	376, 1077
SlaI	CTCGAG	2 cut(s)	161, 792
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	3 cut(s)	161, 483, 792
SmoI	CTYRAG	3 cut(s)	161, 483, 792
Sse9I	AATT	9 cut(s)	212, 250, 357, 510, 516, 726, 780, 867, 1046
SsiI	CCGC	9 cut(s)	65, 68, 130, 154, 267, 281, 335, 633, 740
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	3 cut(s)	121, 226, 715
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	609, 1081
TaqI	TCGA	4 cut(s)	93, 162, 189, 793
TasI	AATT	9 cut(s)	212, 250, 357, 510, 516, 726, 780, 867, 1046
TauI	GCSGC	3 cut(s)	68, 337, 635
TfiI	GAWTC	3 cut(s)	368, 642, 914
Tru1I	TTAA	8 cut(s)	26, 351, 419, 564, 648, 1044, 1056, 1109
Tru9I	TTAA	8 cut(s)	26, 351, 419, 564, 648, 1044, 1056, 1109
TscAI	CASTG	1 cut(s)	738
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	1017
TspRI	CASTG	1 cut(s)	738
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	704
VneI	GTGCAC	2 cut(s)	257, 948
VpaK11BI	GGWCC	2 cut(s)	376, 1077
XapI	RAATTY	3 cut(s)	250, 726, 1046
XhoI	CTCGAG	2 cut(s)	161, 792
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.