Prupe.4G116400_v2.0.a1

Polygalacturonase QRT3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016157
Physical Location & Seq
Reverse (-)
6289797 .. 6292237
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G116400.1

Sequence Viewer

Length: 1431 bp
ATGAGGCCCATCCCATCAGCAGCATTGTGTTTCTTCTTCTTCTTCTTCTTGGTAGAAGAAGCTAAATGTTCTTCTTACAGGCAACAAATGCTGTCAGCATTCAATCATTCCAAGCTGCCCTTTTCACTGGCTCAAGCTTCAAATGTCACAAGGAATGGGAGGGTGTTTTACCCAATCGGGTACGGGGCAGATCCGACTGGAGCAGAGGACAGCACAGATGCCCTACTCAAAGCGGTGGAGGAGGCTTTTCAACTGAAATCCGGGCTTGAATTGCTGCCTGGAATCACTGACCTGGGAGGCGTTGTTATTGATCTTCAAGGTGGAAATTACAAAATCAGCCAACCTCTTAGGTTCCCATCAGGTGCTGGCAATGTTGTGGTACAAGGAGGATCTCTACGAGGCTCATCCACATTCCCAGGGGACCGCCATCTCATTGAACTATGGTCACCAAGTTCCCAAAAACTCAAGCAAAAAGCCACCATCGCCAGCAATGCCGCCTTCTTTGAGAAAGCCCAAAACAATAATAATGTAGGCATCTACTATGAGGACATCACATTCAGAGACATTCTCTTCGATTCAAGCTTCAGAGGAGGAGGCATTTTCGTCGTGGATTCGGCCCGAATTCGAATAACCAACTGCTTCTTCCTCCACTTTACAACAGAAGGCATTTTAGTCCAAAAAGGCCACGAGACCTTCATATCAAACACCTTCTTGGGGCAGCACTCAACGGTTGGAGGAGACAAAGGTGAGAGGGATTTTACAGGCACTGCCATTGACCTTGCCAGCAATGACAATGCCATTACTGACGTTGTAATATTCTCGGCTGCTATTGGTATTATGCTGAGGGGCCAGGCAAACGTGGTCACTGGGGCACATTGCTATAATAAGGCCACAGGGTTTGGTGGCATAGGCATTTTGGTAAAATTGGCAGGGAACTCTCAAACCAGATTGGATAATTGCTACTTGGATTTCAATGCCATAGTCTTGGAAGACCCAGTTCAAGTTCATGTGACAAATGGGTTCTTCTTAGGTGATGCAAATATAGTCTTAAAATCTGTCAATGGCAAGGTTTTTGGGCTAAATATTGTGAACAACATGTTTACAGGGAGCTCACAGGTTCCAATAGTCCAGTTAGAGGGGCAGTTTGGGGATATTGATCAAGTGGTGATTGATCAGAACAATGTGGTTGGGATGGGGTTGAAATCAACGGTGGGGAGATTGAATGTGGAGGGCAATGGGACCAAATGGGTGGCTGATTTTTCATCTGTTTTGGTGTTTCCCAACAGGATTAATAATTTCCAGTACTCATTCTATACAAAAGGGGAGGACAAGTTCACAGCTCATGCTGTGACAAATGTGTCAAGCAATGTGGTGGTTGTGGAGAGTGAGAAGGTGGTAAATGGTGTGGTTTCTCTGGTTGTTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beta_helix

Protein Analysis

477

Amino Acids

51.44

Weight (kDa)

5.87

Isoelectric Point (pI)

22.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20040
fragaria_vesca FvH4_3g12830
malus_domestica MD05G1247600.v1.1
prunus_persica Prupe.4G116400_v2.0.a1
pyrus_communis pycom05g22370
rosa_chinensis RchiOBHm_Chr5g0020771
rosa_laevigata RLG00000032561
rosa_multiflora Rmu_sc0002527.1_g000005
rosa_roxburghii Rroxscaffold_1G00057530
rosa_rugosa Rorug05G0062800
rosa_samantha Rh5AG152700 Rh5BG152400 Rh5CG164000 Rh5DG151900
rosa_wichuraiana Rw5G013540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1357
AciI CCGC 3 cut(s) 233, 424, 495
AclWI GGATC 2 cut(s) 185, 397
AcsI RAATTY 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 568
AfaI GTAC 3 cut(s) 182, 381, 1304
AfiI CCNNNNNNNGG 2 cut(s) 714, 1135
AflIII ACRYGT 1 cut(s) 1095
AjnI CCWGG 4 cut(s) 277, 291, 415, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AloI GAACNNNNNNTCC 2 cut(s) 1316, 1348
AluBI AGCT 6 cut(s) 62, 115, 137, 582, 1110, 1340
AluI AGCT 6 cut(s) 62, 115, 137, 582, 1110, 1340
Alw21I GWGCWC 1 cut(s) 1112
Alw26I GTCTC 3 cut(s) 555, 683, 732
AlwI GGATC 2 cut(s) 185, 397
AlwNI CAGNNNCTG 2 cut(s) 365, 767
AoxI GGCC 5 cut(s) 5, 615, 682, 847, 888
ApeKI GCWGC 5 cut(s) 20, 115, 274, 718, 824
ApoI RAATTY 1 cut(s) 621
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AseI ATTAAT 1 cut(s) 1290
AspS9I GGNCC 5 cut(s) 6, 421, 616, 847, 1239
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 5 cut(s) 438, 758, 1043, 1177, 1415
AsuII TTCGAA 1 cut(s) 625
AvaII GGWCC 2 cut(s) 421, 1239
BaeGI GKGCMC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 1112
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 1112
BbvCI CCTCAGC 1 cut(s) 842
BbvI GCAGC 5 cut(s) 32, 102, 261, 730, 811
BccI CCATC 6 cut(s) 17, 22, 364, 435, 488, 1186
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 4 cut(s) 279, 293, 417, 851
BclI TGATCA 2 cut(s) 1156, 1171
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 555, 683, 732
BisI GCNGC 6 cut(s) 21, 116, 275, 495, 719, 825
BlsI GCNGC 6 cut(s) 22, 117, 276, 496, 720, 826
BmcAI AGTACT 1 cut(s) 1304
Bme1390I CCNGG 5 cut(s) 262, 279, 293, 417, 851
Bme18I GGWCC 2 cut(s) 421, 1239
BmgT120I GGNCC 5 cut(s) 6, 421, 616, 847, 1239
BmiI GGNNCC 5 cut(s) 353, 422, 848, 1119, 1240
BmrFI CCNGG 5 cut(s) 262, 279, 293, 417, 851
BmrI ACTGGG 2 cut(s) 876, 989
BmsI GCATC 3 cut(s) 208, 543, 1024
BmuI ACTGGG 2 cut(s) 876, 989
BpiI GAAGAC 1 cut(s) 996
BplI GAGNNNNNCTC 2 cut(s) 552, 584
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 842
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 2 cut(s) 117, 449
BpuMI CCSGG 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 1155
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 3 cut(s) 292, 415, 416
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 1316, 1346
Bsc4I CCNNNNNNNGG 2 cut(s) 714, 1135
Bse1I ACTGG 7 cut(s) 132, 202, 871, 995, 1129, 1300, 1426
Bse3DI GCAATG 6 cut(s) 376, 496, 793, 874, 1240, 1372
Bse8I GATNNNNATC 1 cut(s) 1155
BseBI CCWGG 4 cut(s) 279, 293, 417, 851
BseDI CCNNGG 3 cut(s) 292, 415, 416
BseGI GGATG 3 cut(s) 9, 404, 1197
BseJI GATNNNNATC 1 cut(s) 1155
BseLI CCNNNNNNNGG 2 cut(s) 714, 1135
BseMI GCAATG 6 cut(s) 376, 496, 793, 874, 1240, 1372
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 7 cut(s) 132, 202, 871, 995, 1129, 1300, 1426
BseRI GAGGAG 4 cut(s) 254, 603, 606, 750
BseSI GKGCMC 1 cut(s) 874
BseXI GCAGC 5 cut(s) 32, 102, 261, 730, 811
BshFI GGCC 5 cut(s) 7, 617, 684, 849, 890
BsiHKAI GWGCWC 1 cut(s) 1112
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 2 cut(s) 434, 1252
BslI CCNNNNNNNGG 2 cut(s) 714, 1135
BsmAI GTCTC 3 cut(s) 555, 683, 732
BsmFI GGGAC 2 cut(s) 434, 1252
BsmI GAATGC 1 cut(s) 98
BsnI GGCC 5 cut(s) 7, 617, 684, 849, 890
Bso31I GGTCTC 1 cut(s) 683
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 2 cut(s) 874, 1112
Bsp143I GATC 5 cut(s) 190, 310, 389, 1156, 1171
BspACI CCGC 3 cut(s) 233, 424, 495
BspANI GGCC 5 cut(s) 7, 617, 684, 849, 890
BspCNI CTCAG 1 cut(s) 834
BspLI GGNNCC 5 cut(s) 353, 422, 848, 1119, 1240
BspPI GGATC 2 cut(s) 185, 397
BspT104I TTCGAA 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 683
BsrDI GCAATG 6 cut(s) 376, 496, 793, 874, 1240, 1372
BsrI ACTGG 7 cut(s) 132, 202, 871, 995, 1129, 1300, 1426
BssECI CCNNGG 3 cut(s) 292, 415, 416
BssMI GATC 5 cut(s) 190, 310, 389, 1156, 1171
BssSI CACGAG 1 cut(s) 686
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 4 cut(s) 279, 293, 417, 851
Bst4CI ACNGT 2 cut(s) 730, 1210
Bst6I CTCTTC 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 367, 487, 784
BstDEI CTNAG 3 cut(s) 347, 842, 1027
BstEII GGTNACC 1 cut(s) 444
BstF5I GGATG 3 cut(s) 9, 404, 1197
BstKTI GATC 5 cut(s) 193, 313, 392, 1159, 1174
BstMAI GTCTC 3 cut(s) 555, 683, 732
BstMBI GATC 5 cut(s) 190, 310, 389, 1156, 1171
BstMWI GCNNNNNNNGC 4 cut(s) 88, 271, 482, 491
BstNI CCWGG 4 cut(s) 279, 293, 417, 851
BstNSI RCATGY 1 cut(s) 1099
BstPI GGTNACC 1 cut(s) 444
BstSCI CCNGG 5 cut(s) 260, 277, 291, 415, 849
BstSLI GKGCMC 1 cut(s) 874
BstV1I GCAGC 5 cut(s) 32, 102, 261, 730, 811
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 2 cut(s) 190, 389
BstXI CCANNNNNNTGG 2 cut(s) 985, 1249
BstYI RGATCY 2 cut(s) 190, 389
BsuRI GGCC 5 cut(s) 7, 617, 684, 849, 890
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 3 cut(s) 9, 404, 1197
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 4 cut(s) 125, 285, 765, 864
Cac8I GCNNGC 3 cut(s) 367, 487, 784
CaiI CAGNNNCTG 2 cut(s) 365, 767
Cfr13I GGNCC 5 cut(s) 6, 421, 616, 847, 1239
Csp6I GTAC 3 cut(s) 181, 380, 1303
CspCI CAANNNNNGTGG 4 cut(s) 880, 915, 1350, 1385
CviAII CATG 3 cut(s) 1007, 1096, 1343
CviQI GTAC 3 cut(s) 181, 380, 1303
DdeI CTNAG 3 cut(s) 347, 842, 1027
DpnI GATC 5 cut(s) 192, 312, 391, 1158, 1173
DpnII GATC 5 cut(s) 190, 310, 389, 1156, 1171
DrdI GACNNNNNNGTC 1 cut(s) 1357
DseDI GACNNNNNNGTC 1 cut(s) 1357
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
Ecl136II GAGCTC 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 1112
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 421, 1239
Eco53kI GAGCTC 1 cut(s) 1110
Eco57I CTGAAG 1 cut(s) 568
Eco91I GGTNACC 1 cut(s) 444
EcoICRI GAGCTC 1 cut(s) 1110
EcoO65I GGTNACC 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 4 cut(s) 277, 291, 415, 849
EcoT38I GRGCYC 1 cut(s) 1112
FaeI CATG 3 cut(s) 1010, 1099, 1346
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 2 cut(s) 434, 1252
FatI CATG 3 cut(s) 1006, 1095, 1342
FbaI TGATCA 2 cut(s) 1156, 1171
Fnu4HI GCNGC 6 cut(s) 21, 116, 275, 495, 719, 825
FokI GGATG 2 cut(s) 391, 1204
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 6 cut(s) 21, 116, 275, 495, 719, 825
GluI GCNGC 6 cut(s) 21, 116, 275, 495, 719, 825
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 5 cut(s) 7, 617, 684, 849, 890
HapII CCGG 1 cut(s) 261
Hin1II CATG 3 cut(s) 1010, 1099, 1346
HindIII AAGCTT 2 cut(s) 135, 580
HinfI GANTC 3 cut(s) 282, 575, 611
HpaII CCGG 1 cut(s) 261
HphI GGTGA 5 cut(s) 438, 758, 1043, 1177, 1415
Hpy166II GTNNAC 4 cut(s) 1090, 1101, 1335, 1423
Hpy188I TCNGA 4 cut(s) 195, 560, 587, 1176
Hpy8I GTNNAC 4 cut(s) 1090, 1101, 1335, 1423
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 5 cut(s) 508, 656, 703, 718, 1384
HpyCH4III ACNGT 2 cut(s) 730, 1210
HpyCH4IV ACGT 2 cut(s) 807, 858
HpyCH4V TGCA 1 cut(s) 1037
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 271, 482, 491
HpyF3I CTNAG 3 cut(s) 347, 842, 1027
HpySE526I ACGT 2 cut(s) 807, 858
Hsp92II CATG 3 cut(s) 1010, 1099, 1346
Ksp22I TGATCA 2 cut(s) 1156, 1171
Kzo9I GATC 5 cut(s) 190, 310, 389, 1156, 1171
LmnI GCTCC 2 cut(s) 200, 1107
Lsp1109I GCAGC 5 cut(s) 32, 102, 261, 730, 811
LweI GCATC 3 cut(s) 208, 543, 1024
MaeII ACGT 2 cut(s) 807, 858
MaeIII GTNAC 5 cut(s) 145, 444, 862, 1009, 1348
MalI GATC 5 cut(s) 192, 312, 391, 1158, 1173
MboI GATC 5 cut(s) 190, 310, 389, 1156, 1171
MflI RGATCY 2 cut(s) 190, 389
MhlI GDGCHC 2 cut(s) 874, 1112
MluCI AATT 6 cut(s) 269, 325, 621, 923, 955, 1294
MmeI TCCRAC 2 cut(s) 218, 712
MseI TTAA 2 cut(s) 1049, 1290
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 5 cut(s) 262, 279, 293, 417, 851
Mva1269I GAATGC 1 cut(s) 98
MvaI CCWGG 4 cut(s) 279, 293, 417, 851
MwoI GCNNNNNNNGC 4 cut(s) 88, 271, 482, 491
NciI CCSGG 1 cut(s) 262
NdeII GATC 5 cut(s) 190, 310, 389, 1156, 1171
NlaIII CATG 3 cut(s) 1010, 1099, 1346
NlaIV GGNNCC 5 cut(s) 353, 422, 848, 1119, 1240
NmeAIII GCCGAG 1 cut(s) 800
NmuCI GTSAC 5 cut(s) 145, 444, 862, 1009, 1348
NspI RCATGY 1 cut(s) 1099
NspV TTCGAA 1 cut(s) 625
PasI CCCWGGG 1 cut(s) 416
PciI ACATGT 1 cut(s) 1095
PctI GAATGC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 282, 575, 611
PkrI GCNGC 6 cut(s) 22, 117, 276, 496, 720, 826
PscI ACATGT 1 cut(s) 1095
PshBI ATTAAT 1 cut(s) 1290
Psp124BI GAGCTC 1 cut(s) 1112
Psp6I CCWGG 4 cut(s) 277, 291, 415, 849
PspEI GGTNACC 1 cut(s) 444
PspGI CCWGG 4 cut(s) 277, 291, 415, 849
PspN4I GGNNCC 5 cut(s) 353, 422, 848, 1119, 1240
PspPI GGNCC 5 cut(s) 6, 421, 616, 847, 1239
PstNI CAGNNNCTG 2 cut(s) 365, 767
PsuI RGATCY 2 cut(s) 190, 389
RsaI GTAC 3 cut(s) 182, 381, 1304
RsaNI GTAC 3 cut(s) 181, 380, 1303
SacI GAGCTC 1 cut(s) 1112
SaqAI TTAA 2 cut(s) 1049, 1290
SatI GCNGC 6 cut(s) 21, 116, 275, 495, 719, 825
Sau3AI GATC 5 cut(s) 190, 310, 389, 1156, 1171
Sau96I GGNCC 5 cut(s) 6, 421, 616, 847, 1239
ScaI AGTACT 1 cut(s) 1304
ScrFI CCNGG 5 cut(s) 262, 279, 293, 417, 851
SduI GDGCHC 2 cut(s) 874, 1112
SfaNI GCATC 3 cut(s) 208, 543, 1024
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 2 cut(s) 421, 1239
SmlI CTYRAG 2 cut(s) 132, 464
SmoI CTYRAG 2 cut(s) 132, 464
Sse9I AATT 6 cut(s) 269, 325, 621, 923, 955, 1294
SsiI CCGC 3 cut(s) 233, 424, 495
SspI AATATT 2 cut(s) 816, 1084
SstI GAGCTC 1 cut(s) 1112
StyD4I CCNGG 5 cut(s) 260, 277, 291, 415, 849
TaaI ACNGT 2 cut(s) 730, 1210
TaiI ACGT 2 cut(s) 810, 861
TaqI TCGA 2 cut(s) 573, 625
TasI AATT 6 cut(s) 269, 325, 621, 923, 955, 1294
TatI WGTACW 1 cut(s) 1302
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 3 cut(s) 282, 575, 611
Tru1I TTAA 2 cut(s) 1049, 1290
Tru9I TTAA 2 cut(s) 1049, 1290
TscAI CASTG 4 cut(s) 132, 292, 772, 871
TseFI GTSAC 5 cut(s) 145, 444, 862, 1009, 1348
TseI GCWGC 5 cut(s) 20, 115, 274, 718, 824
Tsp45I GTSAC 5 cut(s) 145, 444, 862, 1009, 1348
TspDTI ATGAA 3 cut(s) 685, 995, 1251
TspRI CASTG 4 cut(s) 132, 292, 772, 871
VpaK11BI GGWCC 2 cut(s) 421, 1239
VspI ATTAAT 1 cut(s) 1290
XapI RAATTY 1 cut(s) 621
XceI RCATGY 1 cut(s) 1099
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.