Rorug05G0062800

Cholinephosphate cytidylyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002395
Physical Location & Seq
Reverse (-)
5443761 .. 5451615
7855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0062800.1

Sequence Viewer

Length: 1659 bp
ATGTCACCATTTTGCCCTAACTGTGACCGAGAACCTGAGTTTTGGGGTGCTGAAGTGAAATCCGGCGAGAAGTTGAAAGTGAAGCCAGATGACTGCGTGGTTTTGCATCTCACACAGGCATGTGTGGGCTTAAATCAAAGATGTCATGGCGTCGTTTATGTGAGCATCGGGGAAGAGAGAAGAGTCTTGGGAAGTCTCTTGCCACCAAGAGTACCTCAATTTTCCTGCGATCTGGTCTTTGACCAAGAATTTCTGCTTTCACACAACTTGGAGATGGGAAGCGTCTTCTTTGCCGGTTATTCTTGCTTTAGTAAAAATAAGCTTGAGGAAACAAAGCAAACTACAAGGAAGACCAAATCTTCTGATAAGAATCCAATCTGTGAGGAAAAGAGAGAACCTCGTGGGCAAGCAAGGCCAGCGACAAGGAAGACCAGATCTTATGTTAAGAATCCAATCATTGAGGAAAGTAGAGTACCTATTAACAAGGCTGACTTTGTTGTGCGCCCACTGGTGGTGACAATGGCAGAGAACATGAGTAAGGAGCTCGAATTCTATAGAACTATGTTTGAGGCTGAACCGATTGCTGGCCCCCAGATCGGGTCTGAAAGATCGTATGAGTTCAAGATTGGAGATAATTCATTATATGTTGTTGCTGCTTCGTATATTGAGCAACTTGAGCCTCTTGGGCCTGCTCTTTGTGTGGAGACGGGAGATGTATCATCTTTTATTAAGAAAGCGGAAAGTGCTGGGTGGAAGTTGGATGTCCTTGAATATCTGCCCAATATCAGGCCAGATGATAAGTTGAGTGGCGCTAGAATGAGAACCAAATTCGGTCAGATCTGTTACATCTGTCAGACACCCCAAACAAGAAACAATGTACAAAAAGAGCAGCAAACAAACATCAAGTCCATACGCCCTACAATGCTATTTTATGAAGATAAGTTTGCTGAGGCAATTGCAAATTATGAGGCTGTTTTCGGAAGGTCTCAGGGCTCTCTTTTTCCGTTGTTCCGGAGACGATCTACTTCTTTTTCGGACTGCCTCTATGCTGCAGCCAAGGATAGGGGTTTTGGCAGTTCTACATGTCTCTGCATAGAGCCGGTGGACATTGTTAATTTCATGGAGTCGTTCTTTAATTTGAAGTCGTCCATAGATTTCTTCTATCTCCATGGTGAAGTGGTTCTACATGACTGGGGAAAGACAGTTGTGAGAATGATGTCTCCTAGGCGTCACACTCTTTATGTTTACAGCAGCAAGCCATCATTGACTGTGCTCTCATGTAACGTAAAGCATGGTGCTATACAGCCACTGATTCAGTTCCTTGGCTCAGTCAGTCAAGTAAAATGGGTCAGAATCCATGTAGATGAAATTCCTCGTTGCTTGTCCTTCCCTTACCCGGATTTGCTGATTATTGGTGATGAGAAGATACTTACTCTTGAGAGGATGGAAAAAAAATTGACTTCAAGGAATTCGGATACCAAGATACTGCAGGTTCATCGGCAACCGGTATCAGAAGACATGAAAAGATTGTTGAAGAGGCATGAAGCAGAATATGTAGGTCTGCCTTTGACAGTTGAGAATGTTGAACAAGTCTATTCGAGTTTTTCTGCTCCGAAATCAGACAAGTGGGACTATCTTCCTCACCTGGACTGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00440 ko00564 ko01100 ko05231 map00440 map00564 map01100 map05231
Pfam Domains
Protein Families
CTP_transf_like

Protein Analysis

552

Amino Acids

63.02

Weight (kDa)

8.21

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 14 - 100 6.7e-11 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1480
AccIII TCCGGA 1 cut(s) 1011
AciI CCGC 1 cut(s) 737
AcsI RAATTY 5 cut(s) 248, 548, 827, 1368, 1468
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 2 cut(s) 150, 1228
AfaI GTAC 3 cut(s) 213, 474, 879
AfiI CCNNNNNNNGG 8 cut(s) 511, 584, 596, 597, 786, 1062, 1396, 1651
AflIII ACRYGT 1 cut(s) 1082
AgeI ACCGGT 1 cut(s) 1504
AgsI TTSAA 7 cut(s) 76, 622, 770, 1141, 1464, 1534, 1586
AjnI CCWGG 1 cut(s) 1644
AluBI AGCT 2 cut(s) 322, 544
AluI AGCT 2 cut(s) 322, 544
Alw21I GWGCWC 2 cut(s) 546, 1275
Alw26I GTCTC 6 cut(s) 200, 698, 990, 1009, 1091, 1224
AlwNI CAGNNNCTG 1 cut(s) 1309
Aor13HI TCCGGA 1 cut(s) 1011
AoxI GGCC 4 cut(s) 413, 586, 686, 788
ApeKI GCWGC 5 cut(s) 653, 889, 1049, 1052, 1251
ApoI RAATTY 5 cut(s) 248, 548, 827, 1368, 1468
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AsiGI ACCGGT 1 cut(s) 1504
Asp700I GAANNNNTTC 1 cut(s) 1179
AspA2I CCTAGG 1 cut(s) 1223
AspLEI GCGC 2 cut(s) 504, 812
AspS9I GGNCC 2 cut(s) 587, 686
AsuC2I CCSGG 1 cut(s) 1397
AsuHPI GGTGA 4 cut(s) 526, 1184, 1427, 1634
AvrII CCTAGG 1 cut(s) 1223
BanII GRGCYC 2 cut(s) 546, 995
BarI GAAGNNNNNNTAC 2 cut(s) 1167, 1199
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 4 cut(s) 277, 356, 434, 1521
Bbv12I GWGCWC 2 cut(s) 546, 1275
BbvCI CCTCAGC 1 cut(s) 948
BbvI GCAGC 5 cut(s) 640, 901, 1036, 1064, 1263
BccI CCATC 3 cut(s) 268, 1267, 1438
BcgI CGANNNNNNTGC 2 cut(s) 1478, 1512
BciT130I CCWGG 1 cut(s) 1646
BciVI GTATCC 1 cut(s) 1468
BcnI CCSGG 1 cut(s) 1397
BcoDI GTCTC 6 cut(s) 200, 698, 990, 1009, 1091, 1224
BfaI CTAG 2 cut(s) 813, 1224
BfmI CTRYAG 3 cut(s) 553, 1050, 1487
BfoI RGCGCY 1 cut(s) 813
BfuAI ACCTGC 1 cut(s) 1480
BfuI GTATCC 1 cut(s) 1468
BglI GCCNNNNNGGC 1 cut(s) 685
BglII AGATCT 2 cut(s) 434, 837
BisI GCNGC 5 cut(s) 654, 890, 1050, 1053, 1252
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 5 cut(s) 655, 891, 1051, 1054, 1253
Bme1390I CCNGG 2 cut(s) 1397, 1646
BmgT120I GGNCC 2 cut(s) 587, 686
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 1397, 1646
BmrI ACTGGG 1 cut(s) 1201
BmsI GCATC 2 cut(s) 115, 174
BmuI ACTGGG 1 cut(s) 1201
BpiI GAAGAC 4 cut(s) 277, 356, 434, 1521
BplI GAGNNNNNCTC 2 cut(s) 382, 414
Bpu10I CCTNAGC 1 cut(s) 948
BpuEI CTTGAG 3 cut(s) 344, 695, 1457
BpuMI CCSGG 1 cut(s) 1397
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 2 cut(s) 150, 1228
BsaI GGTCTC 1 cut(s) 990
BsaJI CCNNGG 4 cut(s) 1056, 1168, 1223, 1321
BsaWI WCCGGW 2 cut(s) 1011, 1504
Bsc4I CCNNNNNNNGG 8 cut(s) 511, 584, 596, 597, 786, 1062, 1396, 1651
Bse118I RCCGGY 3 cut(s) 293, 1099, 1504
Bse1I ACTGG 3 cut(s) 513, 1196, 1655
Bse8I GATNNNNATC 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 1011
BseBI CCWGG 1 cut(s) 1646
BseDI CCNNGG 4 cut(s) 1056, 1168, 1223, 1321
BseGI GGATG 2 cut(s) 766, 1449
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 8 cut(s) 511, 584, 596, 597, 786, 1062, 1396, 1651
BseMII CTCAG 4 cut(s) 27, 939, 1001, 1341
BseNI ACTGG 3 cut(s) 513, 1196, 1655
BseXI GCAGC 5 cut(s) 640, 901, 1036, 1064, 1263
BseYI CCCAGC 1 cut(s) 746
BshFI GGCC 4 cut(s) 415, 588, 688, 790
BshTI ACCGGT 1 cut(s) 1504
BsiHKAI GWGCWC 2 cut(s) 546, 1275
BsiSI CCGG 6 cut(s) 63, 294, 1012, 1100, 1397, 1505
BslFI GGGAC 1 cut(s) 1643
BslI CCNNNNNNNGG 8 cut(s) 511, 584, 596, 597, 786, 1062, 1396, 1651
BsmAI GTCTC 6 cut(s) 200, 698, 990, 1009, 1091, 1224
BsmBI CGTCTC 2 cut(s) 698, 1009
BsmFI GGGAC 1 cut(s) 1643
BsnI GGCC 4 cut(s) 415, 588, 688, 790
Bso31I GGTCTC 1 cut(s) 990
Bsp1286I GDGCHC 3 cut(s) 546, 995, 1275
Bsp13I TCCGGA 1 cut(s) 1011
Bsp1407I TGTACA 1 cut(s) 877
Bsp143I GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 1 cut(s) 737
BspANI GGCC 4 cut(s) 415, 588, 688, 790
BspCNI CTCAG 4 cut(s) 28, 940, 1000, 1340
BspEI TCCGGA 1 cut(s) 1011
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 2 cut(s) 1054, 1491
BspMI ACCTGC 1 cut(s) 1480
BspTNI GGTCTC 1 cut(s) 990
BsrFI RCCGGY 3 cut(s) 293, 1099, 1504
BsrGI TGTACA 1 cut(s) 877
BsrI ACTGG 3 cut(s) 513, 1196, 1655
BssAI RCCGGY 3 cut(s) 293, 1099, 1504
BssECI CCNNGG 4 cut(s) 1056, 1168, 1223, 1321
BssMI GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
BssNI GRCGYC 2 cut(s) 150, 1228
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 4 cut(s) 1056, 1168, 1223, 1321
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 1646
Bst4CI ACNGT 4 cut(s) 23, 1204, 1270, 1573
Bst6I CTCTTC 3 cut(s) 168, 175, 1529
BstACI GRCGYC 2 cut(s) 150, 1228
BstAUI TGTACA 1 cut(s) 877
BstC8I GCNNGC 5 cut(s) 408, 417, 586, 690, 1256
BstDEI CTNAG 4 cut(s) 36, 948, 987, 1327
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 2 cut(s) 766, 1449
BstH2I RGCGCY 1 cut(s) 813
BstHHI GCGC 2 cut(s) 504, 812
BstKTI GATC 6 cut(s) 232, 437, 597, 611, 840, 1022
BstMAI GTCTC 6 cut(s) 200, 698, 990, 1009, 1091, 1224
BstMBI GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
BstMWI GCNNNNNNNGC 5 cut(s) 412, 416, 676, 685, 743
BstNI CCWGG 1 cut(s) 1646
BstNSI RCATGY 2 cut(s) 123, 1086
BstSCI CCNGG 2 cut(s) 1395, 1644
BstSFI CTRYAG 3 cut(s) 553, 1050, 1487
BstV1I GCAGC 5 cut(s) 640, 901, 1036, 1064, 1263
BstV2I GAAGAC 4 cut(s) 277, 356, 434, 1521
BstX2I RGATCY 2 cut(s) 434, 837
BstYI RGATCY 2 cut(s) 434, 837
BsuI GTATCC 1 cut(s) 1468
BsuRI GGCC 4 cut(s) 415, 588, 688, 790
BtgI CCRYGG 1 cut(s) 1168
BtsCI GGATG 2 cut(s) 766, 1449
BtsIMutI CAGTG 2 cut(s) 506, 1307
BveI ACCTGC 1 cut(s) 1480
Cac8I GCNNGC 5 cut(s) 408, 417, 586, 690, 1256
CaiI CAGNNNCTG 1 cut(s) 1309
CfoI GCGC 2 cut(s) 504, 812
Cfr10I RCCGGY 3 cut(s) 293, 1099, 1504
Cfr13I GGNCC 2 cut(s) 587, 686
CseI GACGC 3 cut(s) 139, 271, 1217
Csp6I GTAC 3 cut(s) 212, 473, 878
CspAI ACCGGT 1 cut(s) 1504
CviQI GTAC 3 cut(s) 212, 473, 878
DdeI CTNAG 4 cut(s) 36, 948, 987, 1327
DpnI GATC 6 cut(s) 231, 436, 596, 610, 839, 1021
DpnII GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
Eam1104I CTCTTC 3 cut(s) 168, 175, 1529
EarI CTCTTC 3 cut(s) 168, 175, 1529
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 4 cut(s) 1056, 1168, 1223, 1321
Eco24I GRGCYC 2 cut(s) 546, 995
Eco31I GGTCTC 1 cut(s) 990
Eco53kI GAGCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 544
EcoRI GAATTC 2 cut(s) 548, 1468
EcoRII CCWGG 1 cut(s) 1644
EcoT14I CCWWGG 4 cut(s) 1056, 1168, 1223, 1321
EcoT38I GRGCYC 2 cut(s) 546, 995
ErhI CCWWGG 4 cut(s) 1056, 1168, 1223, 1321
Esp3I CGTCTC 2 cut(s) 698, 1009
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 1 cut(s) 1643
Fnu4HI GCNGC 5 cut(s) 654, 890, 1050, 1053, 1252
FokI GGATG 2 cut(s) 773, 1456
FriOI GRGCYC 2 cut(s) 546, 995
Fsp4HI GCNGC 5 cut(s) 654, 890, 1050, 1053, 1252
FspBI CTAG 2 cut(s) 813, 1224
GlaI GCGC 2 cut(s) 503, 811
GluI GCNGC 5 cut(s) 654, 890, 1050, 1053, 1252
GsaI CCCAGC 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 813
HaeIII GGCC 4 cut(s) 415, 588, 688, 790
HapII CCGG 6 cut(s) 63, 294, 1012, 1100, 1397, 1505
HgaI GACGC 3 cut(s) 139, 271, 1217
HhaI GCGC 2 cut(s) 504, 812
Hin1I GRCGYC 2 cut(s) 150, 1228
Hin6I GCGC 2 cut(s) 502, 810
HinP1I GCGC 2 cut(s) 502, 810
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 6 cut(s) 183, 370, 448, 1124, 1312, 1353
HpaII CCGG 6 cut(s) 63, 294, 1012, 1100, 1397, 1505
HphI GGTGA 4 cut(s) 526, 1184, 1427, 1634
Hpy166II GTNNAC 2 cut(s) 1105, 1246
Hpy188III TCNNGA 3 cut(s) 622, 1012, 1436
Hpy8I GTNNAC 2 cut(s) 1105, 1246
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 975, 1396
HpyCH4III ACNGT 4 cut(s) 23, 1204, 1270, 1573
HpyCH4IV ACGT 1 cut(s) 1284
HpyCH4V TGCA 5 cut(s) 106, 959, 1052, 1092, 1489
HpyF10VI GCNNNNNNNGC 5 cut(s) 412, 416, 676, 685, 743
HpyF3I CTNAG 4 cut(s) 36, 948, 987, 1327
HpySE526I ACGT 1 cut(s) 1284
Hsp92I GRCGYC 2 cut(s) 150, 1228
HspAI GCGC 2 cut(s) 502, 810
Kpn2I TCCGGA 1 cut(s) 1011
Kzo9I GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
LmnI GCTCC 2 cut(s) 541, 1615
Lsp1109I GCAGC 5 cut(s) 640, 901, 1036, 1064, 1263
LweI GCATC 2 cut(s) 115, 174
MaeI CTAG 2 cut(s) 813, 1224
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 6 cut(s) 3, 23, 514, 842, 1229, 1280
MalI GATC 6 cut(s) 231, 436, 596, 610, 839, 1021
MboI GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 2 cut(s) 434, 837
MhlI GDGCHC 3 cut(s) 546, 995, 1275
MlyI GAGTC 2 cut(s) 192, 1133
MmeI TCCRAC 1 cut(s) 738
MroI TCCGGA 1 cut(s) 1011
MroXI GAANNNNTTC 1 cut(s) 1179
MseI TTAA 6 cut(s) 131, 444, 480, 729, 1113, 1134
MslI CAYNNNNRTG 2 cut(s) 118, 1362
MspI CCGG 6 cut(s) 63, 294, 1012, 1100, 1397, 1505
MspR9I CCNGG 2 cut(s) 1397, 1646
MunI CAATTG 1 cut(s) 954
MvaI CCWGG 1 cut(s) 1646
MwoI GCNNNNNNNGC 5 cut(s) 412, 416, 676, 685, 743
NciI CCSGG 1 cut(s) 1397
NcoI CCATGG 1 cut(s) 1168
NdeII GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 4 cut(s) 3, 23, 514, 1229
NspI RCATGY 2 cut(s) 123, 1086
PciI ACATGT 1 cut(s) 1082
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 4 cut(s) 370, 448, 1312, 1353
PinAI ACCGGT 1 cut(s) 1504
PkrI GCNGC 5 cut(s) 655, 891, 1051, 1054, 1253
PleI GAGTC 2 cut(s) 191, 1132
PpsI GAGTC 2 cut(s) 191, 1132
PscI ACATGT 1 cut(s) 1082
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 1644
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 1 cut(s) 1644
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 2 cut(s) 587, 686
PstI CTGCAG 2 cut(s) 1054, 1491
PstNI CAGNNNCTG 1 cut(s) 1309
PsuI RGATCY 2 cut(s) 434, 837
RsaI GTAC 3 cut(s) 213, 474, 879
RsaNI GTAC 3 cut(s) 212, 473, 878
RseI CAYNNNNRTG 2 cut(s) 118, 1362
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 6 cut(s) 131, 444, 480, 729, 1113, 1134
SatI GCNGC 5 cut(s) 654, 890, 1050, 1053, 1252
Sau3AI GATC 6 cut(s) 229, 434, 594, 608, 837, 1019
Sau96I GGNCC 2 cut(s) 587, 686
SchI GAGTC 2 cut(s) 192, 1133
ScrFI CCNGG 2 cut(s) 1397, 1646
SduI GDGCHC 3 cut(s) 546, 995, 1275
SfaNI GCATC 2 cut(s) 115, 174
SfcI CTRYAG 3 cut(s) 553, 1050, 1487
SmiMI CAYNNNNRTG 2 cut(s) 118, 1362
SmlI CTYRAG 3 cut(s) 323, 674, 1436
SmoI CTYRAG 3 cut(s) 323, 674, 1436
SsiI CCGC 1 cut(s) 737
SspMI CTAG 2 cut(s) 813, 1224
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 1395, 1644
StyI CCWWGG 4 cut(s) 1056, 1168, 1223, 1321
TaaI ACNGT 4 cut(s) 23, 1204, 1270, 1573
TaiI ACGT 1 cut(s) 1287
TaqI TCGA 2 cut(s) 546, 1598
TaqII GACCGA 2 cut(s) 42, 821
TatI WGTACW 1 cut(s) 877
TfiI GAWTC 4 cut(s) 370, 448, 1312, 1353
Tru1I TTAA 6 cut(s) 131, 444, 480, 729, 1113, 1134
Tru9I TTAA 6 cut(s) 131, 444, 480, 729, 1113, 1134
TscAI CASTG 2 cut(s) 513, 1314
TseFI GTSAC 4 cut(s) 3, 23, 514, 1229
TseI GCWGC 5 cut(s) 653, 889, 1049, 1052, 1251
Tsp45I GTSAC 4 cut(s) 3, 23, 514, 1229
TspDTI ATGAA 7 cut(s) 627, 948, 1108, 1380, 1484, 1535, 1557
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 513, 1314
XapI RAATTY 5 cut(s) 248, 548, 827, 1368, 1468
XceI RCATGY 2 cut(s) 123, 1086
XmaJI CCTAGG 1 cut(s) 1223
XmnI GAANNNNTTC 1 cut(s) 1179
XspI CTAG 2 cut(s) 813, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.