Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368081.1

Orthogroup ID

OG0002395

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 726

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggaagctgcaatgccgggaaagactctactgtggattatgatttgtagcttgtttatcacagttcatgtttacggagaatcctctcagatgggtcatttttcgaggagtgattatcgagaccaaatgcgaagactgcaagagttcaaggcctcattaacccggcacgattcgggttcttttgttgcaccatcttcagtctcacctgctcctagccctaaccctccggggaggactagtcctcgtgtgtatcacgtgacaacgtacggtgctgatcctaccgggaacagggacagcactgaggccttgtctcaggcatttgcagatgcatttagaggtccatcagaagggttcttgatggagggaattagcaaccttggtggtgcacagatcaatcttgaaggtggccagtacctgattagcaaaccgctccggtttcctgctgccggagtaggaaaccttatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016787 GO:0016798 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0034293 GO:0043062 GO:0043934 GO:0044085 GO:0044703 GO:0045229 GO:0048229 GO:0048236 GO:0048646 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0085029 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectate_lyase_3

Protein Analysis

155

Amino Acids

16.76

Weight (kDa)

6.9

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050
fragaria_vesca	FvH4_3g12840 FvH4_6g36530
malus_domestica	MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1
prunus_persica	Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1
pyrus_communis	pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190
rosa_chinensis	RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781
rosa_laevigata	RLG00000020361 RLG00000032562
rosa_multiflora	Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057520 Rroxscaffold_2G00098530
rosa_rugosa	Rorug02G0408600 Rorug05G0062800 Rorug05G0062900
rosa_samantha	Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000
rosa_wichuraiana	Rw2G038110 Rw5G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	430
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	180
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	2 cut(s)	266, 413
AfiI	CCNNNNNNNGG	3 cut(s)	288, 347, 446
AgsI	TTSAA	2 cut(s)	148, 401
AhlI	ACTAGT	1 cut(s)	236
AluBI	AGCT	2 cut(s)	8, 51
AluI	AGCT	2 cut(s)	8, 51
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	3 cut(s)	114, 205, 315
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	3 cut(s)	150, 303, 406
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	8, 443
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	4 cut(s)	18, 163, 228, 283
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	408
BauI	CACGAG	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	4 cut(s)	85, 199, 349, 352
BcnI	CCSGG	4 cut(s)	18, 163, 228, 283
BcoDI	GTCTC	3 cut(s)	114, 205, 315
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	2 cut(s)	213, 237
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	9, 444
BlsI	GCNGC	2 cut(s)	10, 445
Bme1390I	CCNGG	4 cut(s)	18, 163, 228, 283
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmrFI	CCNGG	4 cut(s)	18, 163, 228, 283
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	139
BpuMI	CCSGG	4 cut(s)	18, 163, 228, 283
BsaAI	YACGTR	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	227, 376
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 347, 446
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	227, 376
BseLI	CCNNNNNNNGG	3 cut(s)	288, 347, 446
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	101, 291, 326
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	3 cut(s)	152, 305, 408
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	6 cut(s)	17, 163, 227, 282, 433, 447
BsiWI	CGTACG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	288, 347, 446
BsmAI	GTCTC	3 cut(s)	114, 205, 315
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	152, 305, 408
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	274, 390
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	3 cut(s)	152, 305, 408
BspCNI	CTCAG	3 cut(s)	100, 292, 325
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	227, 376
BssMI	GATC	2 cut(s)	274, 390
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	33, 64, 269
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	3 cut(s)	87, 300, 312
BstKTI	GATC	2 cut(s)	277, 393
BstMAI	GTCTC	3 cut(s)	114, 205, 315
BstMBI	GATC	2 cut(s)	274, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstSCI	CCNGG	4 cut(s)	16, 161, 226, 281
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	152, 305, 408
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	265, 412
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	6 cut(s)	8, 51, 152, 216, 305, 408
CviKI_1	RGCY	6 cut(s)	8, 51, 152, 216, 305, 408
CviQI	GTAC	2 cut(s)	265, 412
DdeI	CTNAG	3 cut(s)	87, 300, 312
DpnI	GATC	2 cut(s)	276, 392
DpnII	GATC	2 cut(s)	274, 390
EaeI	YGGCCR	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	2 cut(s)	152, 305
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	180
Eco72I	CACGTG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	1 cut(s)	71
FaiI	YATR	3 cut(s)	41, 69, 464
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	9, 444
Fsp4HI	GCNGC	2 cut(s)	9, 444
FspBI	CTAG	2 cut(s)	213, 237
GluI	GCNGC	2 cut(s)	9, 444
HaeIII	GGCC	3 cut(s)	152, 305, 408
HapII	CCGG	6 cut(s)	17, 163, 227, 282, 433, 447
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	3 cut(s)	25, 80, 170
HpaII	CCGG	6 cut(s)	17, 163, 227, 282, 433, 447
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	73, 386
Hpy188I	TCNGA	2 cut(s)	90, 346
Hpy188III	TCNNGA	3 cut(s)	119, 355, 398
Hpy8I	GTNNAC	2 cut(s)	73, 386
HpyAV	CCTTC	2 cut(s)	341, 395
HpyCH4III	ACNGT	3 cut(s)	33, 64, 269
HpyCH4IV	ACGT	2 cut(s)	255, 263
HpyCH4V	TGCA	6 cut(s)	11, 139, 188, 323, 329, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	3 cut(s)	87, 300, 312
HpySE526I	ACGT	2 cut(s)	255, 263
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	274, 390
LmnI	GCTCC	2 cut(s)	214, 435
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	213, 237
MaeII	ACGT	2 cut(s)	255, 263
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	276, 392
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	2 cut(s)	274, 390
MboII	GAAGA	2 cut(s)	144, 186
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	1 cut(s)	366
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	9 cut(s)	94, 99, 163, 225, 234, 252, 295, 329, 355
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	408
MspI	CCGG	6 cut(s)	17, 163, 227, 282, 433, 447
MspR9I	CCNGG	4 cut(s)	18, 163, 228, 283
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	4 cut(s)	18, 163, 228, 283
NdeII	GATC	2 cut(s)	274, 390
NlaIII	CATG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	214
PceI	AGGCCT	2 cut(s)	152, 305
PfeI	GAWTC	2 cut(s)	80, 170
Pfl23II	CGTACG	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	10, 445
PleI	GAGTC	1 cut(s)	19
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	256
PspLI	CGTACG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	266, 413
RsaNI	GTAC	2 cut(s)	265, 412
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	9, 444
Sau3AI	GATC	2 cut(s)	274, 390
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	4 cut(s)	18, 163, 228, 283
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	1 cut(s)	366
SseBI	AGGCCT	2 cut(s)	152, 305
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	2 cut(s)	213, 237
StuI	AGGCCT	2 cut(s)	152, 305
StyD4I	CCNGG	4 cut(s)	16, 161, 226, 281
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	33, 64, 269
TaiI	ACGT	2 cut(s)	258, 266
TaqI	TCGA	2 cut(s)	104, 118
TasI	AATT	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	80, 170
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	8, 443
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	338
XspI	CTAG	2 cut(s)	213, 237
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.