Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Reverse (-)

52103955 .. 52108115

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0408600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAAGACTCAAAATTAGCAAAGAATCTTCATCAGTCAGAGACAATGGAAAGAAAACCAATGAACTCCCTCTCTGTATTCACCAATTCTGAGATTATGAAAATGGAGAATATTTTCAAGGAGACACCACAACAATCACTTTCTCAGGAGTTTTTCCAAAATCTTGCAACAAATTTCAGCTGCCAACCAAGCCGTGTTGGAAAATCGGATATAACAAGGCAACAGGTGGAAGGTTGGTTCCAGAGTAAACGAAAAGAGATTCAAGCCAAAGGCACTTCGTCATCTGGTGCCTTTGATTGGGTTGTTGAATCCCATGAAGATCTTTCAGATTTGACTATGTTCAGCAATGCACCTGACAATTCTCAGAAGCCAAAAGATCTTTCAGAGTTGGCATTTGAAGCAAAATCATCGAAAGACGGTGCATGGTATGATGTTGCTTCTTTCCTCTCCTACAGAGTTGTCAGTTCAGGAGAACTAGAAGTTCGAGTTCGTTATGCTGGATTTGGTAGGGAGGAGGATGAATGGGTAAATGTGAGAAGAGCAGTGCGTGACAGATCTATTCCTCTAGAAGAGTCCGAGTGTCATAAGGTCAAGGTTGGGGATCTTGTCCTATGCTTCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0008150 GO:0010769 GO:0022603 GO:0022604 GO:0040008 GO:0043900 GO:0045595 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0060284 GO:0065007 GO:0080092 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

208

Amino Acids

23.77

Weight (kDa)

5.55

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAWADEE	PF16719	129 - 207	8e-26	SAWADEE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	118, 263, 308, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	180, 622
AluI	AGCT	2 cut(s)	180, 622
Alw26I	GTCTC	2 cut(s)	35, 116
AlwI	GGATC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	177
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BcoDI	GTCTC	2 cut(s)	35, 116
BfaI	CTAG	2 cut(s)	476, 566
BfmI	CTRYAG	1 cut(s)	451
BglII	AGATCT	3 cut(s)	319, 376, 554
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	239, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	81, 158, 377
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	35, 116
Bsp143I	GATC	4 cut(s)	319, 376, 554, 601
BspCNI	CTCAG	3 cut(s)	82, 157, 376
BspLI	GGNNCC	2 cut(s)	239, 289
BspPI	GGATC	1 cut(s)	609
BspQI	GCTCTTC	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	352
BssMI	GATC	4 cut(s)	319, 376, 554, 601
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	532, 564
BstDEI	CTNAG	3 cut(s)	90, 144, 363
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	4 cut(s)	322, 379, 557, 604
BstMAI	GTCTC	2 cut(s)	35, 116
BstMBI	GATC	4 cut(s)	319, 376, 554, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 398
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	4 cut(s)	319, 376, 554, 601
BstYI	RGATCY	4 cut(s)	319, 376, 554, 601
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
CviAII	CATG	2 cut(s)	314, 423
CviJI	RGCY	5 cut(s)	180, 192, 266, 370, 622
CviKI_1	RGCY	5 cut(s)	180, 192, 266, 370, 622
DdeI	CTNAG	3 cut(s)	90, 144, 363
DpnI	GATC	4 cut(s)	321, 378, 556, 603
DpnII	GATC	4 cut(s)	319, 376, 554, 601
Eam1104I	CTCTTC	2 cut(s)	532, 564
EarI	CTCTTC	2 cut(s)	532, 564
FaeI	CATG	2 cut(s)	317, 426
FaiI	YATR	9 cut(s)	98, 212, 315, 338, 424, 429, 495, 585, 613
FatI	CATG	2 cut(s)	313, 422
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	476, 566
GluI	GCNGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	317, 426
HinfI	GANTC	5 cut(s)	8, 25, 259, 308, 572
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	7 cut(s)	40, 91, 208, 328, 366, 385, 577
Hpy188III	TCNNGA	4 cut(s)	146, 241, 468, 566
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	167, 350, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 398
HpyF3I	CTNAG	3 cut(s)	90, 144, 363
Hsp92II	CATG	2 cut(s)	317, 426
Kzo9I	GATC	4 cut(s)	319, 376, 554, 601
LguI	GCTCTTC	1 cut(s)	532
LpnPI	CCDG	7 cut(s)	131, 209, 254, 270, 366, 453, 483
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	476, 566
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	4 cut(s)	321, 378, 556, 603
MboI	GATC	4 cut(s)	319, 376, 554, 601
MboII	GAAGA	4 cut(s)	20, 329, 549, 581
MflI	RGATCY	4 cut(s)	319, 376, 554, 601
MluCI	AATT	4 cut(s)	14, 85, 172, 358
MlyI	GAGTC	2 cut(s)	2, 581
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	80, 455, 505, 508, 573
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	189, 398
NdeII	GATC	4 cut(s)	319, 376, 554, 601
NlaIII	CATG	2 cut(s)	317, 426
NlaIV	GGNNCC	2 cut(s)	239, 289
NmuCI	GTSAC	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	532
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	25, 259, 308
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	2, 580
PpsI	GAGTC	2 cut(s)	2, 580
PspN4I	GGNNCC	2 cut(s)	239, 289
PsuI	RGATCY	4 cut(s)	319, 376, 554, 601
PvuII	CAGCTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	319, 376, 554, 601
SchI	GAGTC	2 cut(s)	2, 581
SetI	ASST	7 cut(s)	182, 228, 235, 355, 591, 597, 624
SfcI	CTRYAG	1 cut(s)	451
Sse9I	AATT	4 cut(s)	14, 85, 172, 358
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	476, 566
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	410, 484
TasI	AATT	4 cut(s)	14, 85, 172, 358
TfiI	GAWTC	3 cut(s)	25, 259, 308
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	6 cut(s)	17, 20, 77, 113, 330, 534
TspRI	CASTG	1 cut(s)	549
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	476, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.