RLG00000032884

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001119
Physical Location & Seq
Forward (+)
20410900 .. 20411566
667 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032884

Sequence Viewer

Length: 447 bp
ATGGCCACTGATAGCCTTGTGACTAATTGTTTCTTTCTTCTTATTGCATTCATATGGTTGTTAGGAGTGCCGCCTTGGATTTGGCTCCCGGCGGTTGCTGTCAGGGATGACAGTTCTAGTTACCTGGTAGCTTCTCTGAGGCCAAGTTCTGACTGCGTGGGTCTGTGTTGGTCTGTATCTGTTCGATTCGACTGGGTCACAGATCGGAGTCGTCTGGTTGGTTTCTTTGAGATGGTTGGGTGTCGACACAAACTAGGGACTGCATTTTTCTTTGCTTGCGAAGGTATCAGAGGTTCTATTAGAGGCAATGATGTCTTAAGCTTCTTCGATTCTGCCTACCTTCGTTTACTACCGGCGGCGGTGAAGTCTAGGAGCATGGTTTTGGTACTTGCAGAGGGGTTTGATCTGAGATTGATCCTGAGTGATCAGAATAAGGCGCTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.49

Weight (kDa)

7.62

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 244
AciI CCGC 4 cut(s) 71, 92, 356, 359
AclWI GGATC 1 cut(s) 409
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 387
AflII CTTAAG 1 cut(s) 316
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 2 cut(s) 131, 321
AluI AGCT 2 cut(s) 131, 321
AlwI GGATC 1 cut(s) 409
AoxI GGCC 2 cut(s) 3, 140
AspLEI GCGC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 373
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 3 cut(s) 117, 254, 369
BfoI RGCGCY 1 cut(s) 440
BfrI CTTAAG 1 cut(s) 316
BisI GCNGC 2 cut(s) 71, 357
BlsI GCNGC 2 cut(s) 72, 358
Bme1390I CCNGG 2 cut(s) 89, 125
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 89, 125
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 128, 398, 410
BseNI ACTGG 1 cut(s) 197
BshFI GGCC 2 cut(s) 5, 142
BsiSI CCGG 2 cut(s) 89, 353
BslFI GGGAC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 2 cut(s) 5, 142
Bsp143I GATC 4 cut(s) 202, 403, 414, 424
BspACI CCGC 4 cut(s) 71, 92, 356, 359
BspANI GGCC 2 cut(s) 5, 142
BspCNI CTCAG 3 cut(s) 129, 399, 411
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 409
BspTI CTTAAG 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 4 cut(s) 202, 403, 414, 424
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 113
BstAFI CTTAAG 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 3 cut(s) 137, 407, 419
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 4 cut(s) 205, 406, 417, 427
BstMBI GATC 4 cut(s) 202, 403, 414, 424
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 87, 123
BsuRI GGCC 2 cut(s) 5, 142
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 352
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 1 cut(s) 386
CviAII CATG 1 cut(s) 376
CviJI RGCY 6 cut(s) 5, 15, 85, 131, 142, 321
CviKI_1 RGCY 6 cut(s) 5, 15, 85, 131, 142, 321
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 3 cut(s) 137, 407, 419
DpnI GATC 4 cut(s) 204, 405, 416, 426
DpnII GATC 4 cut(s) 202, 403, 414, 424
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 379
FaiI YATR 3 cut(s) 53, 55, 377
FaqI GGGAC 1 cut(s) 271
FatI CATG 1 cut(s) 375
FauNDI CATATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 71, 357
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 71, 357
FspBI CTAG 3 cut(s) 117, 254, 369
GlaI GCGC 1 cut(s) 438
GluI GCNGC 2 cut(s) 71, 357
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 2 cut(s) 5, 142
HapII CCGG 2 cut(s) 89, 353
HhaI GCGC 1 cut(s) 439
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 3 cut(s) 186, 208, 329
HpaII CCGG 2 cut(s) 89, 353
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 2 cut(s) 245, 347
Hpy188I TCNGA 6 cut(s) 138, 151, 207, 290, 408, 429
Hpy188III TCNNGA 1 cut(s) 418
Hpy8I GTNNAC 2 cut(s) 245, 347
HpyAV CCTTC 2 cut(s) 275, 350
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 47, 263, 392
HpyF3I CTNAG 3 cut(s) 137, 407, 419
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 202, 403, 414, 424
LmnI GCTCC 2 cut(s) 90, 372
LpnPI CCDG 8 cut(s) 88, 102, 110, 137, 178, 200, 366, 431
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 3 cut(s) 117, 254, 369
MaeIII GTNAC 3 cut(s) 19, 119, 196
MalI GATC 4 cut(s) 204, 405, 416, 426
MboI GATC 4 cut(s) 202, 403, 414, 424
MboII GAAGA 2 cut(s) 29, 316
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 4 cut(s) 132, 284, 296, 388
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 52
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 316
MspI CCGG 2 cut(s) 89, 353
MspR9I CCNGG 2 cut(s) 89, 125
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 1 cut(s) 125
NciI CCSGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 53
NdeII GATC 4 cut(s) 202, 403, 414, 424
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 19, 196
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 186, 329
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 72, 358
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 86
PsrI GAACNNNNNNTAC 2 cut(s) 277, 309
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 52
SalI GTCGAC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 71, 357
Sau3AI GATC 4 cut(s) 202, 403, 414, 424
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 89, 125
SetI ASST 7 cut(s) 126, 133, 286, 295, 323, 342, 446
SexAI ACCWGGT 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 1 cut(s) 25
SsiI CCGC 4 cut(s) 71, 92, 356, 359
SspMI CTAG 3 cut(s) 117, 254, 369
StyD4I CCNGG 2 cut(s) 87, 123
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 184, 189, 244, 327
TasI AATT 1 cut(s) 25
TauI GCSGC 2 cut(s) 73, 359
TfiI GAWTC 2 cut(s) 186, 329
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 2 cut(s) 19, 196
Tsp45I GTSAC 2 cut(s) 19, 196
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 13
Tth111I GACNNNGTC 1 cut(s) 194
Vha464I CTTAAG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 244
XspI CTAG 3 cut(s) 117, 254, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.