Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Forward (+)

25094279 .. 25094995

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG241200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTGTGCTGCTGAAGTAATTCTTGTTCTGTTTTGTTATATATATTTCAGGGACTATTGTTTGCTGAGAAAGCCAGATTGGGCTCAACACCACCGAGCTGCCACAACAAGTGCAACCAGTGCCACCCTTGCATGGCGGTCCAAGTCCCCACCATGCCCAGCCGCGACCGGGTCCGACCCGTGGGGAAGACCCGACCCGCTAAGCCCATGGTGCTCTTTGACCCGTCTCATCTGGATAACAGGTACTCCAATTACAAGCCACTGGGTTGGAAATGCCATTGTGGTGACCACTTCTTCAATCCCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.32

Weight (kDa)

9.01

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	3 cut(s)	136, 162, 197
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	132, 168, 180
AgsI	TTSAA	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	8, 98
Asp700I	GAANNNNTTC	1 cut(s)	18
AspA2I	CCTAGG	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	138, 171
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	138, 171
AvrII	CCTAGG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	9, 99, 162
BlnI	CCTAGG	1 cut(s)	302
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	3 cut(s)	10, 100, 163
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	138, 171
BmgT120I	GGNCC	2 cut(s)	138, 171
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	179, 206, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 168, 180
Bse1I	ACTGG	2 cut(s)	117, 266
BseDI	CCNNGG	3 cut(s)	179, 206, 302
BseLI	CCNNNNNNNGG	3 cut(s)	132, 168, 180
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	117, 266
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	65, 130
BslI	CCNNNNNNNGG	3 cut(s)	132, 168, 180
BsmAI	GTCTC	1 cut(s)	230
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	65, 130
Bsp1286I	GDGCHC	2 cut(s)	85, 215
Bsp1720I	GCTNAGC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	3 cut(s)	136, 162, 197
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	117, 266
BssECI	CCNNGG	3 cut(s)	179, 206, 302
BssT1I	CCWWGG	2 cut(s)	206, 302
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	65, 200
BstDSI	CCRYGG	2 cut(s)	179, 206
BstEII	GGTNACC	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	230
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 119, 128, 210
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	266
BtgI	CCRYGG	2 cut(s)	179, 206
BtsIMutI	CAGTG	2 cut(s)	124, 259
Cfr13I	GGNCC	2 cut(s)	138, 171
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	132, 153, 207
CviJI	RGCY	6 cut(s)	73, 83, 98, 161, 204, 258
CviKI_1	RGCY	6 cut(s)	73, 83, 98, 161, 204, 258
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	65, 200
Eco130I	CCWWGG	2 cut(s)	206, 302
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	138, 171
Eco57I	CTGAAG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	206, 302
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	206, 302
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	3 cut(s)	135, 156, 210
FaiI	YATR	6 cut(s)	39, 41, 43, 133, 154, 208
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	2 cut(s)	65, 130
FatI	CATG	3 cut(s)	131, 152, 206
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	9, 99, 162
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	9, 99, 162
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	3 cut(s)	9, 99, 162
GsaI	CCCAGC	1 cut(s)	161
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	135, 156, 210
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	113, 131
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 119, 128, 210
HpyF3I	CTNAG	2 cut(s)	65, 200
Hsp92II	CATG	3 cut(s)	135, 156, 210
LpnPI	CCDG	8 cut(s)	34, 87, 130, 171, 181, 217, 225, 247
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	198, 285
MhlI	GDGCHC	2 cut(s)	85, 215
MluCI	AATT	2 cut(s)	18, 249
MmeI	TCCRAC	2 cut(s)	198, 247
MroXI	GAANNNNTTC	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	70, 119, 128, 210
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	206
NlaIII	CATG	3 cut(s)	135, 156, 210
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	10, 100, 163
PspEI	GGTNACC	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	138, 171
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PsyI	GACNNNGTC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	281
SatI	GCNGC	3 cut(s)	9, 99, 162
Sau96I	GGNCC	2 cut(s)	138, 171
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	2 cut(s)	85, 215
SetI	ASST	3 cut(s)	100, 244, 308
SinI	GGWCC	2 cut(s)	138, 171
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	18, 249
SsiI	CCGC	3 cut(s)	136, 162, 197
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	206, 302
TasI	AATT	2 cut(s)	18, 249
TauI	GCSGC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	124, 266
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	8, 98
Tsp45I	GTSAC	1 cut(s)	283
TspRI	CASTG	2 cut(s)	124, 266
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	138, 171
XmaJI	CCTAGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.