RLG00000003281

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
46568276 .. 46568698
423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003281

Sequence Viewer

Length: 348 bp
ATGACCGTGGCCATTGCTAGCCTTATGGCTAATTGTTTCTTTCTTCATGTTCCTTTTGTTCTGTCACTTGGAGCGCCGCATTGGATATGGTTCTCGACGGTTGTTGCTTGGGATGGCAATTATGGTGTTTTGGATCGGAGTTGTCCAACTGGCCTCCTTGCGGTGGTTGGGTTTCGTCGTAGGGCAGACATGGTTGTTATTGATTTGGATGACAGATGTTTGGTATTCAATCCAGATTTTGCTGGTTTTGGATTGAAGAACATGGTGGATGATCGGAATGTTTGCACTTATGTTAGACATGACGGATCGCTGCTGCGTCAAAGAGTCGTCAAAGTTGGGTTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.82

Weight (kDa)

7.71

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 161
AclWI GGATC 2 cut(s) 141, 313
AcoI YGGCCR 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 160, 163
AgsI TTSAA 2 cut(s) 229, 256
AlwI GGATC 2 cut(s) 141, 313
AoxI GGCC 3 cut(s) 9, 151, 342
ApeKI GCWGC 2 cut(s) 310, 313
AspLEI GCGC 1 cut(s) 76
AsuNHI GCTAGC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 11
BbvI GCAGC 2 cut(s) 297, 300
BccI CCATC 1 cut(s) 107
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 3 cut(s) 77, 311, 314
BlsI GCNGC 3 cut(s) 78, 312, 315
BmtI GCTAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 163
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 3 cut(s) 118, 214, 274
BseLI CCNNNNNNNGG 2 cut(s) 160, 163
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 297, 300
BshFI GGCC 3 cut(s) 11, 153, 344
BslI CCNNNNNNNGG 2 cut(s) 160, 163
BsnI GGCC 3 cut(s) 11, 153, 344
Bsp143I GATC 3 cut(s) 133, 271, 305
BspACI CCGC 2 cut(s) 77, 161
BspANI GGCC 3 cut(s) 11, 153, 344
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 141, 313
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 133, 271, 305
Bst4CI ACNGT 2 cut(s) 7, 100
BstC8I GCNNGC 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 118, 214, 274
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 3 cut(s) 136, 274, 308
BstMBI GATC 3 cut(s) 133, 271, 305
BstV1I GCAGC 2 cut(s) 297, 300
BsuRI GGCC 3 cut(s) 11, 153, 344
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 3 cut(s) 118, 214, 274
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 76
CseI GACGC 1 cut(s) 305
CviAII CATG 4 cut(s) 47, 190, 262, 299
CviJI RGCY 5 cut(s) 11, 21, 29, 153, 344
CviKI_1 RGCY 5 cut(s) 11, 21, 29, 153, 344
DpnI GATC 3 cut(s) 135, 273, 307
DpnII GATC 3 cut(s) 133, 271, 305
EaeI YGGCCR 1 cut(s) 9
FaeI CATG 4 cut(s) 50, 193, 265, 302
FaiI YATR 8 cut(s) 26, 48, 88, 123, 191, 263, 291, 300
FatI CATG 4 cut(s) 46, 189, 261, 298
Fnu4HI GCNGC 3 cut(s) 77, 311, 314
FokI GGATG 3 cut(s) 125, 221, 281
Fsp4HI GCNGC 3 cut(s) 77, 311, 314
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 77, 311, 314
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 3 cut(s) 11, 153, 344
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 76
Hin1II CATG 4 cut(s) 50, 193, 265, 302
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 324
Hpy188I TCNGA 2 cut(s) 138, 276
Hpy188III TCNNGA 2 cut(s) 94, 233
Hpy99I CGWCG 2 cut(s) 100, 180
HpyCH4III ACNGT 2 cut(s) 7, 100
HpyCH4V TGCA 1 cut(s) 285
Hsp92II CATG 4 cut(s) 50, 193, 265, 302
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 3 cut(s) 133, 271, 305
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 135, 228, 246
Lsp1109I GCAGC 2 cut(s) 297, 300
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 63
MalI GATC 3 cut(s) 135, 273, 307
MboI GATC 3 cut(s) 133, 271, 305
MboII GAAGA 2 cut(s) 35, 268
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 2 cut(s) 31, 118
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 1 cut(s) 164
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
NdeII GATC 3 cut(s) 133, 271, 305
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 4 cut(s) 50, 193, 265, 302
NmuCI GTSAC 1 cut(s) 63
PkrI GCNGC 3 cut(s) 78, 312, 315
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
SatI GCNGC 3 cut(s) 77, 311, 314
Sau3AI GATC 3 cut(s) 133, 271, 305
SchI GAGTC 1 cut(s) 333
Sse9I AATT 2 cut(s) 31, 118
SsiI CCGC 2 cut(s) 77, 161
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 7, 100
TaqI TCGA 1 cut(s) 95
TasI AATT 2 cut(s) 31, 118
TauI GCSGC 1 cut(s) 79
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 2 cut(s) 310, 313
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 318
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.