RLG00000002973

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001119
Physical Location & Seq
Reverse (-)
42503683 .. 42504422
740 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002973

Sequence Viewer

Length: 705 bp
ATGGCCATTGCTAGCCTGGTGGCTAATCGGTTCTTTCTTCTCGTTGCGTTTGTTCTGTCGCTTGGAGTGACGCCCTGGATTGGGATCCCTGTGGTGGTTGTCTGGGACGGCAGTTCTGATGTTTTGGTGGCTGATTCGAGGCCGGGTTCTGATGGCGTGGATCTGGTTTGGGATGCCTTGGCTCAGTGCAATTGGGTTTTGGATCGAGGTCGTCTGACCACAGACGGTGGTGGGGGCTGCATCAACGCCGTTGATGGTGCTTGGGAACAGAAGGATATACTCGCCTCCTCTGATTTTGGTGGTTTGATTGGCGGCTTTGGTTTTGACTGTATTGGATGTGATGGGGATTCTACAATCACTGGTTTTGTTCCCGTCCCTCTACTCTGGGGTTGGCTTGAGCATGGTGGCGGTCGATTTGTTTCGGGGAGGCTGGAGATGAGGACCGATCTGATTTCTTTGGGCCCGGATCCTCTGATTTTAGGCGGTGGTTTAAGGGTTTGGTTTTTGGACTCGGGAATGTCTTGGTCTGGTGGTAAGAGGTCATTCTCCAGGATAGACACCAGCGGAGGAGAGGTTGCTATTGGCGGTGGAGATAGTTGCGGCGGCTGGAAGGGTGCCCTTAGTGATCTCCGCTTGGGCCATCTGGGCCTTGCTCTGGATTGTGGGATGGGATCTAAGTTTTGGGTTCTGGGCCTACTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

24.41

Weight (kDa)

4.53

Isoelectric Point (pI)

33.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 614
AciI CCGC 8 cut(s) 312, 408, 483, 564, 585, 600, 603, 631
AclWI GGATC 7 cut(s) 79, 92, 168, 210, 461, 474, 679
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 71
AfiI CCNNNNNNNGG 4 cut(s) 80, 81, 94, 655
AjnI CCWGG 3 cut(s) 15, 74, 548
AlwI GGATC 7 cut(s) 79, 92, 168, 210, 461, 474, 679
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 6 cut(s) 3, 140, 460, 637, 646, 691
ApaI GGGCCC 1 cut(s) 464
ApeKI GCWGC 1 cut(s) 237
AspS9I GGNCC 6 cut(s) 441, 460, 461, 637, 646, 691
AsuC2I CCSGG 2 cut(s) 144, 464
AsuNHI GCTAGC 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 511
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 2 cut(s) 464, 619
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 84, 466
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 224
BccI CCATC 5 cut(s) 146, 248, 335, 648, 661
BceAI ACGGC 2 cut(s) 124, 233
BciT130I CCWGG 3 cut(s) 17, 76, 550
BcnI CCSGG 2 cut(s) 144, 464
BfaI CTAG 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 645
BisI GCNGC 4 cut(s) 238, 313, 601, 604
BlsI GCNGC 4 cut(s) 239, 314, 602, 605
Bme1390I CCNGG 5 cut(s) 17, 76, 144, 464, 550
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 511
BmgT120I GGNCC 6 cut(s) 441, 460, 461, 637, 646, 691
BmiI GGNNCC 4 cut(s) 86, 462, 468, 616
BmrFI CCNGG 5 cut(s) 17, 76, 144, 464, 550
BmsI GCATC 2 cut(s) 163, 249
BmtI GCTAGC 1 cut(s) 15
BpmI CTGGAG 2 cut(s) 452, 532
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 2 cut(s) 144, 464
BsaBI GATNNNNATC 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 74, 177
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 81, 94, 655
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 6
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 3 cut(s) 17, 76, 550
BseDI CCNNGG 2 cut(s) 74, 177
BseGI GGATG 3 cut(s) 178, 341, 672
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 4 cut(s) 80, 81, 94, 655
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 2 cut(s) 277, 582
BseSI GKGCMC 2 cut(s) 464, 619
BseXI GCAGC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 6 cut(s) 5, 142, 462, 639, 648, 693
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 2 cut(s) 143, 464
BslFI GGGAC 2 cut(s) 119, 359
BslI CCNNNNNNNGG 4 cut(s) 80, 81, 94, 655
BsmFI GGGAC 2 cut(s) 119, 359
BsnI GGCC 6 cut(s) 5, 142, 462, 639, 648, 693
BsoBI CYCGRG 1 cut(s) 511
Bsp120I GGGCCC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 464, 619
Bsp143I GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
BspACI CCGC 8 cut(s) 312, 408, 483, 564, 585, 600, 603, 631
BspANI GGCC 6 cut(s) 5, 142, 462, 639, 648, 693
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 4 cut(s) 86, 462, 468, 616
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 7 cut(s) 79, 92, 168, 210, 461, 474, 679
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 74, 177
BssMI GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 17, 76, 550
Bst4CI ACNGT 2 cut(s) 227, 329
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 183, 620, 675
BstF5I GGATG 3 cut(s) 178, 341, 672
BstKTI GATC 7 cut(s) 87, 163, 205, 448, 469, 628, 674
BstMBI GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 1 cut(s) 645
BstNI CCWGG 3 cut(s) 17, 76, 550
BstSCI CCNGG 5 cut(s) 15, 74, 142, 462, 548
BstSLI GKGCMC 2 cut(s) 464, 619
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 4 cut(s) 84, 160, 466, 671
BstYI RGATCY 4 cut(s) 84, 160, 466, 671
BsuRI GGCC 6 cut(s) 5, 142, 462, 639, 648, 693
BtsCI GGATG 3 cut(s) 178, 341, 672
BtsIMutI CAGTG 2 cut(s) 191, 357
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 6 cut(s) 441, 460, 461, 637, 646, 691
CseI GACGC 1 cut(s) 79
CviAII CATG 1 cut(s) 401
DdeI CTNAG 3 cut(s) 183, 620, 675
DpnI GATC 7 cut(s) 86, 162, 204, 447, 468, 627, 673
DpnII GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 15, 74, 548
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 404
FaiI YATR 2 cut(s) 278, 402
FaqI GGGAC 2 cut(s) 119, 359
FatI CATG 1 cut(s) 400
Fnu4HI GCNGC 4 cut(s) 238, 313, 601, 604
FokI GGATG 3 cut(s) 185, 348, 679
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 4 cut(s) 238, 313, 601, 604
FspBI CTAG 1 cut(s) 12
GluI GCNGC 4 cut(s) 238, 313, 601, 604
GsuI CTGGAG 2 cut(s) 452, 532
HaeIII GGCC 6 cut(s) 5, 142, 462, 639, 648, 693
HapII CCGG 2 cut(s) 143, 464
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 404
HinfI GANTC 3 cut(s) 134, 347, 509
HpaII CCGG 2 cut(s) 143, 464
Hpy188I TCNGA 6 cut(s) 118, 151, 216, 292, 450, 474
Hpy188III TCNNGA 2 cut(s) 513, 656
HpyAV CCTTC 2 cut(s) 265, 604
HpyCH4III ACNGT 2 cut(s) 227, 329
HpyCH4V TGCA 2 cut(s) 189, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 645
HpyF3I CTNAG 3 cut(s) 183, 620, 675
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 404
Kzo9I GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 163, 249
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 67
MalI GATC 7 cut(s) 86, 162, 204, 447, 468, 627, 673
MboI GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 4 cut(s) 84, 160, 466, 671
MhlI GDGCHC 2 cut(s) 464, 619
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 503
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 491
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 2 cut(s) 143, 464
MspR9I CCNGG 5 cut(s) 17, 76, 144, 464, 550
MunI CAATTG 1 cut(s) 190
MvaI CCWGG 3 cut(s) 17, 76, 550
MwoI GCNNNNNNNGC 1 cut(s) 645
NciI CCSGG 2 cut(s) 144, 464
NdeII GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 4 cut(s) 86, 462, 468, 616
NmuCI GTSAC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 134, 347
PfoI TCCNGGA 1 cut(s) 548
PkrI GCNGC 4 cut(s) 239, 314, 602, 605
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
Psp6I CCWGG 3 cut(s) 15, 74, 548
PspGI CCWGG 3 cut(s) 15, 74, 548
PspN4I GGNNCC 4 cut(s) 86, 462, 468, 616
PspOMI GGGCCC 1 cut(s) 460
PspPI GGNCC 6 cut(s) 441, 460, 461, 637, 646, 691
PsuI RGATCY 4 cut(s) 84, 160, 466, 671
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 4 cut(s) 238, 313, 601, 604
Sau3AI GATC 7 cut(s) 84, 160, 202, 445, 466, 625, 671
Sau96I GGNCC 6 cut(s) 441, 460, 461, 637, 646, 691
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 5 cut(s) 17, 76, 144, 464, 550
SduI GDGCHC 2 cut(s) 464, 619
SetI ASST 3 cut(s) 211, 542, 576
SfaNI GCATC 2 cut(s) 163, 249
SfiI GGCCNNNNNGGCC 1 cut(s) 645
SinI GGWCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 1 cut(s) 190
SsiI CCGC 8 cut(s) 312, 408, 483, 564, 585, 600, 603, 631
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 5 cut(s) 15, 74, 142, 462, 548
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 227, 329
TaqI TCGA 3 cut(s) 137, 205, 412
TaqII GACCGA 1 cut(s) 458
TasI AATT 1 cut(s) 190
TauI GCSGC 3 cut(s) 315, 603, 606
TfiI GAWTC 2 cut(s) 134, 347
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 2 cut(s) 191, 364
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 689
TspRI CASTG 2 cut(s) 191, 364
VpaK11BI GGWCC 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.