RLG00000034170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001119
Physical Location & Seq
Reverse (-)
37722294 .. 37722697
404 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034170

Sequence Viewer

Length: 318 bp
ATGGGGATCTGGTTGACCAAATCTGGCATGGAGGAATTCCAAATGGCAATGGTGGTTGTGTTGTGCGTCTCTGATCGGATTCGCCCCGAACTAGGGATTGATTTCTTCATTACTTGCGGCGGAGCTCCTCATTGGGAAGTATACGCGGTAGAAGGAGAGGAAATTGATACTTTGATGGCGGTGCCATCCAATACAGGCTGCCAGATCGAGGCGCTCTGGATCCCAGATGTTAGTAGAGCGGTTTGCGTTTGCGACGGTGGTGAATTCTTCTCTGGCGACTGGACGAAGACTGTGGAAAATGGAGACTGGTCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.67

Weight (kDa)

4.05

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 146
AciI CCGC 5 cut(s) 117, 120, 146, 179, 239
AclWI GGATC 3 cut(s) 14, 214, 227
AcsI RAATTY 2 cut(s) 35, 263
AfiI CCNNNNNNNGG 3 cut(s) 92, 93, 208
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 73, 297
AlwI GGATC 3 cut(s) 14, 214, 227
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 2 cut(s) 35, 263
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 185
BccI CCATC 2 cut(s) 169, 193
BcoDI GTCTC 2 cut(s) 73, 297
BfaI CTAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 2 cut(s) 118, 199
BlsI GCNGC 2 cut(s) 119, 200
BmiI GGNNCC 2 cut(s) 183, 221
BpiI GAAGAC 1 cut(s) 293
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 93, 208
Bse1I ACTGG 2 cut(s) 284, 311
Bse3DI GCAATG 1 cut(s) 54
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 92, 93, 208
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 284, 311
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 92, 93, 208
BsmAI GTCTC 2 cut(s) 73, 297
BsmBI CGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 4 cut(s) 6, 73, 204, 219
BspACI CCGC 5 cut(s) 117, 120, 146, 179, 239
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 183, 221
BspPI GGATC 3 cut(s) 14, 214, 227
BspT107I GGYRCC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 2 cut(s) 284, 311
BssMI GATC 4 cut(s) 6, 73, 204, 219
BssNAI GTATAC 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 257, 292
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 9, 76, 207, 222
BstMAI GTCTC 2 cut(s) 73, 297
BstMBI GATC 4 cut(s) 6, 73, 204, 219
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 6, 219
BstYI RGATCY 2 cut(s) 6, 219
BstZ17I GTATAC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 185
CfoI GCGC 1 cut(s) 214
CseI GACGC 1 cut(s) 55
CviAII CATG 1 cut(s) 28
CviJI RGCY 2 cut(s) 125, 198
CviKI_1 RGCY 2 cut(s) 125, 198
DpnI GATC 4 cut(s) 8, 75, 206, 221
DpnII GATC 4 cut(s) 6, 73, 204, 219
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 125
EcoRI GAATTC 2 cut(s) 35, 263
EcoT38I GRGCYC 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 31
FaiI YATR 2 cut(s) 29, 142
FatI CATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 118, 199
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 118, 199
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 118, 199
HaeII RGCGCY 1 cut(s) 215
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 79
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 15, 142
Hpy188I TCNGA 2 cut(s) 73, 78
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 2 cut(s) 15, 142
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 257, 292
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 4 cut(s) 6, 73, 204, 219
LmnI GCTCC 2 cut(s) 122, 130
LpnPI CCDG 8 cut(s) 9, 180, 202, 215, 237, 258, 265, 292
Lsp1109I GCAGC 1 cut(s) 185
MaeI CTAG 1 cut(s) 92
MalI GATC 4 cut(s) 8, 75, 206, 221
MbiI CCGCTC 1 cut(s) 239
MboI GATC 4 cut(s) 6, 73, 204, 219
MboII GAAGA 3 cut(s) 97, 259, 298
MflI RGATCY 2 cut(s) 6, 219
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 3 cut(s) 35, 162, 263
MnlI CCTC 4 cut(s) 25, 138, 151, 202
MvnI CGCG 1 cut(s) 146
NdeII GATC 4 cut(s) 6, 73, 204, 219
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 183, 221
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 119, 200
Psp124BI GAGCTC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 183, 221
PsuI RGATCY 2 cut(s) 6, 219
SacI GAGCTC 1 cut(s) 127
SatI GCNGC 2 cut(s) 118, 199
Sau3AI GATC 4 cut(s) 6, 73, 204, 219
SduI GDGCHC 1 cut(s) 127
SetI ASST 1 cut(s) 127
Sse9I AATT 3 cut(s) 35, 162, 263
SsiI CCGC 5 cut(s) 117, 120, 146, 179, 239
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 127
TaaI ACNGT 2 cut(s) 257, 292
TaqI TCGA 1 cut(s) 207
TasI AATT 3 cut(s) 35, 162, 263
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 79
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 97
XapI RAATTY 2 cut(s) 35, 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.