Rh7CG248200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001119
Physical Location & Seq
Forward (+)
23337007 .. 23342231
5225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG248200.1

Sequence Viewer

Length: 246 bp
ATGAGCTTCGATTCTCTATTTCAAAATACGTACCTTATCGGCTATCCCAACTCCAGGGGCGGAACAGTGTGGAGTCCCGCCGGGGTCCCGACCCTCCCTCTGTCGCTTGGAGCGTCGCCTTGGATATGGTTCCCGACGGTTGTTGTCTGGGATGGCAGTTCTGGTGTTTTGGTGGCTGCTCTGAGACCGAACTCTGACAGCGTGGATTTGAGTTGGTCTGCATCGGATCGACACGACTGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.8

Weight (kDa)

4.38

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 78
AclWI GGATC 1 cut(s) 234
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 55
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 55, 82
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 3 cut(s) 86, 87, 131
BmrFI CCNGG 2 cut(s) 55, 82
BmsI GCATC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 54, 81, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 3 cut(s) 54, 81, 119
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 60, 71
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 60, 71
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 2 cut(s) 60, 78
BspCNI CTCAG 1 cut(s) 174
BspLI GGNNCC 3 cut(s) 86, 87, 131
BspPI GGATC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 54, 81, 119
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 67, 139
BstBAI YACGTR 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 53, 80
BstSNI TACGTA 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 3 cut(s) 6, 42, 176
CviKI_1 RGCY 3 cut(s) 6, 42, 176
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 182
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaiI YATR 1 cut(s) 127
FaqI GGGAC 2 cut(s) 60, 71
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 37
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 102
HinfI GANTC 2 cut(s) 11, 73
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 183, 196, 226
Hpy188III TCNNGA 2 cut(s) 88, 133
Hpy99I CGWCG 2 cut(s) 118, 139
HpyCH4III ACNGT 2 cut(s) 67, 139
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 29
KflI GGGWCCC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 40, 67, 94, 133, 147, 223
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 230
MaeII ACGT 1 cut(s) 29
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 2 cut(s) 104, 108
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 55, 82
MvaI CCWGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 82
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 3 cut(s) 86, 87, 131
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 1 cut(s) 11
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 3 cut(s) 86, 87, 131
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 55, 82
SetI ASST 3 cut(s) 8, 32, 36
SfaNI GCATC 1 cut(s) 230
SinI GGWCC 1 cut(s) 85
SnaBI TACGTA 1 cut(s) 30
SsiI CCGC 2 cut(s) 60, 78
StyD4I CCNGG 2 cut(s) 53, 80
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 67, 139
TaiI ACGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 9, 229
TaqII GACCGA 1 cut(s) 202
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 176
TspRI CASTG 1 cut(s) 72
Tth111I GACNNNGTC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.