RLG00000007764

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001119
Physical Location & Seq
Reverse (-)
20765158 .. 20765908
751 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007764

Sequence Viewer

Length: 471 bp
ATGGCCACTGCTAGCCTTGTGACTAATTATTTCTTTCTTCTTATTGCGTTCATATGGTTGTTAGGAGCGCCGCCTTGCATTTGGCTCCCGGCAGTTGCTGTCTGGGATGGCAGTTCTGGTTACCTGGTGGCTTCTCTGAGGCCAAGTTTTGACTGTGTGGGGACTGCGTTCCTCTTTGCTTACGAAGGTATCAAAGTTTCTGTTGGAGGCGGAGATGTCTCAAACTTCTTCGATTCTGCCTACCTTCGGTTACTACTGGCGGTGGTGAAGTATAGGAGCATGGATTTGGTGCTTGTGGACGGTTTTGATCTGAGATTGATCCTGAGTGATCATAATATGGCGCTGAACTGGGTGCCTTTCGATCTTTGTGATGGTGCAACTTGTTCGGCTGCAACCCACAGCAGCGGCGGTGGCGATTTGCTGGGCTGTGGTGGAATAATTGGGGTGCTCTTAGCAAGTTTGCTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.57

Weight (kDa)

4.4

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 5 cut(s) 71, 210, 260, 405, 408
AclWI GGATC 1 cut(s) 313
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 246
AjnI CCWGG 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 2 cut(s) 3, 140
ApeKI GCWGC 2 cut(s) 389, 402
AspLEI GCGC 2 cut(s) 70, 343
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 277
AsuNHI GCTAGC 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 376, 414
BccI CCATC 2 cut(s) 101, 365
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 12, 469
BfoI RGCGCY 2 cut(s) 71, 344
BisI GCNGC 4 cut(s) 71, 390, 403, 406
BlsI GCNGC 4 cut(s) 72, 391, 404, 407
Bme1390I CCNGG 2 cut(s) 89, 125
BmiI GGNNCC 2 cut(s) 86, 354
BmrFI CCNGG 2 cut(s) 89, 125
BmrI ACTGGG 1 cut(s) 358
BmtI GCTAGC 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 358
BpuMI CCSGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 261, 353
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 3 cut(s) 128, 302, 314
BseNI ACTGG 2 cut(s) 261, 353
BseXI GCAGC 2 cut(s) 376, 414
BseYI CCCAGC 1 cut(s) 421
BshFI GGCC 2 cut(s) 5, 142
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 5, 142
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 4 cut(s) 307, 318, 328, 361
BspACI CCGC 5 cut(s) 71, 210, 260, 405, 408
BspANI GGCC 2 cut(s) 5, 142
BspCNI CTCAG 3 cut(s) 129, 303, 315
BspLI GGNNCC 2 cut(s) 86, 354
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 261, 353
BssMI GATC 4 cut(s) 307, 318, 328, 361
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 155, 302
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 137, 311, 323, 451
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 2 cut(s) 71, 344
BstHHI GCGC 2 cut(s) 70, 343
BstKTI GATC 4 cut(s) 310, 321, 331, 364
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 4 cut(s) 307, 318, 328, 361
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 1 cut(s) 125
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 87, 123
BstV1I GCAGC 2 cut(s) 376, 414
BsuRI GGCC 2 cut(s) 5, 142
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 98
CfoI GCGC 2 cut(s) 70, 343
CsiI ACCWGGT 1 cut(s) 123
CviAII CATG 1 cut(s) 280
CviJI RGCY 7 cut(s) 5, 15, 85, 131, 142, 389, 426
CviKI_1 RGCY 7 cut(s) 5, 15, 85, 131, 142, 389, 426
DdeI CTNAG 4 cut(s) 137, 311, 323, 451
DpnI GATC 4 cut(s) 309, 320, 330, 363
DpnII GATC 4 cut(s) 307, 318, 328, 361
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 283
FaiI YATR 6 cut(s) 53, 55, 273, 281, 333, 338
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 279
FauNDI CATATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 4 cut(s) 71, 390, 403, 406
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 71, 390, 403, 406
FspBI CTAG 2 cut(s) 12, 469
GlaI GCGC 2 cut(s) 69, 342
GluI GCNGC 4 cut(s) 71, 390, 403, 406
GsaI CCCAGC 1 cut(s) 425
HaeII RGCGCY 2 cut(s) 71, 344
HaeIII GGCC 2 cut(s) 5, 142
HapII CCGG 1 cut(s) 89
HhaI GCGC 2 cut(s) 70, 343
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 2 cut(s) 68, 341
HinP1I GCGC 2 cut(s) 68, 341
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 138, 312
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 179, 254
HpyCH4III ACNGT 2 cut(s) 155, 302
HpyCH4V TGCA 3 cut(s) 78, 377, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 4 cut(s) 137, 311, 323, 451
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 2 cut(s) 68, 341
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 307, 318, 328, 361
LmnI GCTCC 3 cut(s) 65, 90, 276
LpnPI CCDG 9 cut(s) 88, 102, 102, 110, 137, 242, 334, 335, 407
Lsp1109I GCAGC 2 cut(s) 376, 414
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 2 cut(s) 12, 469
MaeIII GTNAC 3 cut(s) 19, 119, 249
MalI GATC 4 cut(s) 309, 320, 330, 363
MboI GATC 4 cut(s) 307, 318, 328, 361
MboII GAAGA 2 cut(s) 29, 220
MhlI GDGCHC 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 25, 438
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 132, 182, 200
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 89, 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 53
NdeII GATC 4 cut(s) 307, 318, 328, 361
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 86, 354
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 4 cut(s) 72, 391, 404, 407
Psp6I CCWGG 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 421
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 86, 354
PstNI CAGNNNCTG 1 cut(s) 98
SatI GCNGC 4 cut(s) 71, 390, 403, 406
Sau3AI GATC 4 cut(s) 307, 318, 328, 361
ScrFI CCNGG 2 cut(s) 89, 125
SduI GDGCHC 1 cut(s) 450
SetI ASST 3 cut(s) 126, 190, 246
SexAI ACCWGGT 1 cut(s) 123
Sse9I AATT 2 cut(s) 25, 438
SsiI CCGC 5 cut(s) 71, 210, 260, 405, 408
SspMI CTAG 2 cut(s) 12, 469
StyD4I CCNGG 2 cut(s) 87, 123
TaaI ACNGT 2 cut(s) 155, 302
TaqI TCGA 2 cut(s) 231, 360
TasI AATT 2 cut(s) 25, 438
TauI GCSGC 2 cut(s) 73, 408
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 389, 402
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 13
XspI CTAG 2 cut(s) 12, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.