Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Reverse (-)

48155570 .. 48155952

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

ATGGCCATGGCCATTGCTTGCCTTGTGGCATATTGTTTCTTGCTTCTTCTTGCCTTCATACTGTTGCTTGGAGCGCCGCCTTGGTTTTGGTTCCTAGTGGTTGTTGTCTGGGACGAAAGCTATGGTTTTCTGGTAGCGTCTCTGAGGCCGAGCTCTGACAGCGAGGATCTGAGTTGGTCTGTATCAGATCTTTACGACTGGGTCTTGGATCGGAGTCGTCCGGCTGGCCTCTTTGCGGTGGTTGGGTGTTGTATTAGGGCGGACATGGCCGTTGATTTGGATGACAGATGTTCGGGTTTCACTCAAGATTTTGAGGGTTCTGGTTTGAAGGACATGGTGGATGATCACAAGGGTCGCACTGATGTTAGACAGGGTGGTTCGCT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.05

Weight (kDa)

4.23

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	77, 236, 260
AclWI	GGATC	2 cut(s)	174, 216
AcoI	YGGCCR	3 cut(s)	3, 9, 267
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	2 cut(s)	120, 153
AluI	AGCT	2 cut(s)	120, 153
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	174, 216
AoxI	GGCC	5 cut(s)	3, 9, 146, 226, 267
AspLEI	GCGC	1 cut(s)	76
BalI	TGGCCA	2 cut(s)	5, 11
BanII	GRGCYC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	6, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	6, 80
BseGI	GGATG	2 cut(s)	286, 346
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	134, 161
BseNI	ACTGG	1 cut(s)	203
BshFI	GGCC	5 cut(s)	5, 11, 148, 228, 269
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	144
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	5 cut(s)	5, 11, 148, 228, 269
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	4 cut(s)	166, 187, 208, 343
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	3 cut(s)	77, 236, 260
BspANI	GGCC	5 cut(s)	5, 11, 148, 228, 269
BspCNI	CTCAG	2 cut(s)	135, 162
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	174, 216
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	6, 80
BssMI	GATC	4 cut(s)	166, 187, 208, 343
BssT1I	CCWWGG	2 cut(s)	6, 80
Bst4CI	ACNGT	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	19, 226
BstDEI	CTNAG	2 cut(s)	143, 170
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	286, 346
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	4 cut(s)	169, 190, 211, 346
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	166, 187, 208, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 159, 266
BstX2I	RGATCY	2 cut(s)	166, 187
BstYI	RGATCY	2 cut(s)	166, 187
BsuRI	GGCC	5 cut(s)	5, 11, 148, 228, 269
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	286, 346
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	19, 226
CfoI	GCGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	126
CviAII	CATG	3 cut(s)	7, 265, 334
CviJI	RGCY	8 cut(s)	5, 11, 120, 148, 153, 224, 228, 269
CviKI_1	RGCY	8 cut(s)	5, 11, 120, 148, 153, 224, 228, 269
DdeI	CTNAG	2 cut(s)	143, 170
DpnI	GATC	4 cut(s)	168, 189, 210, 345
DpnII	GATC	4 cut(s)	166, 187, 208, 343
EaeI	YGGCCR	3 cut(s)	3, 9, 267
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	6, 80
Eco24I	GRGCYC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	6, 80
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	2 cut(s)	6, 80
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	3 cut(s)	10, 268, 337
FaiI	YATR	6 cut(s)	8, 31, 59, 123, 266, 335
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	6, 264, 333
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	2 cut(s)	293, 353
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	5 cut(s)	5, 11, 148, 228, 269
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	3 cut(s)	10, 268, 337
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	221
Hpy188I	TCNGA	5 cut(s)	144, 157, 171, 187, 213
Hpy188III	TCNNGA	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	64, 322
HpyCH4III	ACNGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 159, 266
HpyF3I	CTNAG	2 cut(s)	143, 170
Hsp92II	CATG	3 cut(s)	10, 268, 337
HspAI	GCGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	166, 187, 208, 343
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	7 cut(s)	94, 116, 184, 210, 234, 306, 356
MaeI	CTAG	1 cut(s)	95
MalI	GATC	4 cut(s)	168, 189, 210, 345
MboI	GATC	4 cut(s)	166, 187, 208, 343
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	2 cut(s)	166, 187
MhlI	GDGCHC	1 cut(s)	155
MlsI	TGGCCA	2 cut(s)	5, 11
MluNI	TGGCCA	2 cut(s)	5, 11
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	138, 157, 239, 307
Mox20I	TGGCCA	2 cut(s)	5, 11
MscI	TGGCCA	2 cut(s)	5, 11
Msp20I	TGGCCA	2 cut(s)	5, 11
MspI	CCGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	73, 159, 266
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	166, 187, 208, 343
NlaIII	CATG	3 cut(s)	10, 268, 337
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	166, 187
PsyI	GACNNNGTC	1 cut(s)	200
SacI	GAGCTC	1 cut(s)	155
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	166, 187, 208, 343
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	2 cut(s)	122, 155
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SsiI	CCGC	3 cut(s)	77, 236, 260
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	6, 80
TaaI	ACNGT	1 cut(s)	63
TauI	GCSGC	1 cut(s)	79
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.