Rh2DG378300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001119
Physical Location & Seq
Forward (+)
54292112 .. 54292575
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG378300.1

Sequence Viewer

Length: 237 bp
ATGGTGGCGTCCTCTACTGGCTGCCAGATCAAGGCACTCTGGTTCCCGGATGCTGGTGAAGCAGGTTGCGTTGGCATCGGCAGTGAACTCTTCGATGGCAGCTGGACGGAGGCTGGTCTTGGTGGAAGGCTTGGGCCTCCATGTGGGCTTGCTTCTTTGGCTAGGGTTCCTGGTGGGCGTGGTGGTTCTCGGCCCATCAACAAAGTGGCATTTTGTTGGTTCTATGTTTGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.04

Weight (kDa)

7.65

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 31, 53, 143
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
AoxI GGCC 2 cut(s) 134, 191
ApeKI GCWGC 2 cut(s) 21, 99
AspS9I GGNCC 2 cut(s) 134, 192
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 8, 111
BccI CCATC 2 cut(s) 89, 203
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 47
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 22, 100
BlsI GCNGC 2 cut(s) 23, 101
Bme1390I CCNGG 2 cut(s) 47, 171
BmgT120I GGNCC 2 cut(s) 134, 192
BmiI GGNNCC 2 cut(s) 44, 168
BmrFI CCNGG 2 cut(s) 47, 171
BmsI GCATC 2 cut(s) 40, 84
BpuMI CCSGG 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 53, 143
Bse1I ACTGG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 3 cut(s) 31, 53, 143
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 8, 111
BshFI GGCC 2 cut(s) 136, 193
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 31, 53, 143
BsnI GGCC 2 cut(s) 136, 193
Bsp143I GATC 1 cut(s) 27
BspANI GGCC 2 cut(s) 136, 193
BspHI TCATGA 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 44, 168
BspMI ACCTGC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 22
BssMI GATC 1 cut(s) 27
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 150
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 59, 158
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 45, 169
BstV1I GCAGC 2 cut(s) 8, 111
BsuRI GGCC 2 cut(s) 136, 193
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 134, 192
CviAII CATG 2 cut(s) 141, 234
CviJI RGCY 8 cut(s) 21, 102, 113, 130, 136, 148, 161, 193
CviKI_1 RGCY 8 cut(s) 21, 102, 113, 130, 136, 148, 161, 193
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 144, 237
FaiI YATR 3 cut(s) 142, 225, 235
FatI CATG 2 cut(s) 140, 233
Fnu4HI GCNGC 2 cut(s) 22, 100
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 22, 100
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 22, 100
HaeIII GGCC 2 cut(s) 136, 193
HapII CCGG 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 144, 237
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 158
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 144, 237
Kzo9I GATC 1 cut(s) 27
Lsp1109I GCAGC 2 cut(s) 8, 111
LweI GCATC 2 cut(s) 40, 84
MaeI CTAG 1 cut(s) 162
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 82
MnlI CCTC 3 cut(s) 22, 103, 147
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 47, 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 59, 158
NciI CCSGG 1 cut(s) 47
NdeII GATC 1 cut(s) 27
NlaIII CATG 2 cut(s) 144, 237
NlaIV GGNNCC 2 cut(s) 44, 168
NmeAIII GCCGAG 1 cut(s) 169
PagI TCATGA 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 23, 101
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 44, 168
PspPI GGNCC 2 cut(s) 134, 192
PvuII CAGCTG 1 cut(s) 102
SatI GCNGC 2 cut(s) 22, 100
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 2 cut(s) 134, 192
ScrFI CCNGG 2 cut(s) 47, 171
SetI ASST 2 cut(s) 67, 104
SfaNI GCATC 2 cut(s) 40, 84
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 45, 169
TaqI TCGA 1 cut(s) 93
TscAI CASTG 1 cut(s) 88
TseI GCWGC 2 cut(s) 21, 99
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.