Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Forward (+)

4789976 .. 4790362

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG026100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAATGGCCATTGCTAGCCTTGTGGCTTATTGTTTCTTGCTTCTTCTTGCTTTCATACTATTGCTTGGAGCGCCGCCTTGGATTTGGTTCCCAGCGGTTGTTGTCTGTGATGGAAGTTATGGTTTTTTGGTAGCTTTTCTGAGGCCGAGCGCTGACAACGCGGATCTGAGTTGGTCTGTATCAGATTGTTATGACTGGGTCTCGGATCGGTGTCGTCCGGCTGGTCTATTTGCGATGGTTGGGTGTCGTTGTAGGGCGGGCAGGGTCGTTGATTTGGATGACAGATGGTCGAAGTTCAAGCCAGATTTTGCTGTTTCTGATTTGAAGGACAGGGTGGATGATCACAATGGTCGCACTGATGCTAGACATGGAGGTTCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

5.5

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	4 cut(s)	77, 98, 164, 260
AclWI	GGATC	2 cut(s)	174, 216
AcoI	YGGCCR	1 cut(s)	9
AfeI	AGCGCT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	301, 328
AhdI	GACNNNNNGTC	1 cut(s)	289
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	174, 216
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	2 cut(s)	9, 146
AspLEI	GCGC	2 cut(s)	76, 155
AsuNHI	GCTAGC	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	11
BccI	CCATC	3 cut(s)	107, 232, 282
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	18, 366
BfoI	RGCGCY	2 cut(s)	77, 156
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	352
BmtI	GCTAGC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	208
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	2 cut(s)	12, 12
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	286, 346
BseMI	GCAATG	2 cut(s)	12, 12
BseMII	CTCAG	2 cut(s)	134, 161
BseNI	ACTGG	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	11, 148
BsiSI	CCGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	11, 148
Bso31I	GGTCTC	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	166, 208, 343
BspACI	CCGC	4 cut(s)	77, 98, 164, 260
BspANI	GGCC	2 cut(s)	11, 148
BspCNI	CTCAG	2 cut(s)	135, 162
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	174, 216
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	2 cut(s)	12, 12
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	3 cut(s)	166, 208, 343
BssT1I	CCWWGG	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	19, 262
BstDEI	CTNAG	2 cut(s)	143, 170
BstF5I	GGATG	2 cut(s)	286, 346
BstFNI	CGCG	1 cut(s)	164
BstH2I	RGCGCY	2 cut(s)	77, 156
BstHHI	GCGC	2 cut(s)	76, 155
BstKTI	GATC	3 cut(s)	169, 211, 346
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	3 cut(s)	166, 208, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 161
BstUI	CGCG	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	11, 148
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	286, 346
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	19, 262
CfoI	GCGC	2 cut(s)	76, 155
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	7 cut(s)	11, 21, 29, 137, 148, 224, 304
CviKI_1	RGCY	7 cut(s)	11, 21, 29, 137, 148, 224, 304
DdeI	CTNAG	2 cut(s)	143, 170
DpnI	GATC	3 cut(s)	168, 210, 345
DpnII	GATC	3 cut(s)	166, 208, 343
DriI	GACNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	208
Eco47III	AGCGCT	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	374
FaiI	YATR	5 cut(s)	59, 123, 195, 372, 385
FatI	CATG	1 cut(s)	370
FauI	CCCGC	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	2 cut(s)	293, 353
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	18, 366
GlaI	GCGC	2 cut(s)	75, 154
GluI	GCNGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	98
HaeII	RGCGCY	2 cut(s)	77, 156
HaeIII	GGCC	2 cut(s)	11, 148
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	2 cut(s)	76, 155
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	2 cut(s)	74, 153
HinP1I	GCGC	2 cut(s)	74, 153
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	5 cut(s)	144, 171, 187, 208, 322
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 161
HpyF3I	CTNAG	2 cut(s)	143, 170
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	2 cut(s)	74, 153
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	166, 208, 343
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	7 cut(s)	108, 184, 210, 234, 250, 318, 319
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	18, 366
MalI	GATC	3 cut(s)	168, 210, 345
MboI	GATC	3 cut(s)	166, 208, 343
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	11
MnlI	CCTC	2 cut(s)	138, 368
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	73, 161
NdeII	GATC	3 cut(s)	166, 208, 343
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	200
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	3 cut(s)	166, 208, 343
SetI	ASST	2 cut(s)	139, 379
SfaNI	GCATC	1 cut(s)	352
SsiI	CCGC	4 cut(s)	77, 98, 164, 260
SspMI	CTAG	2 cut(s)	18, 366
StyI	CCWWGG	1 cut(s)	80
TaqI	TCGA	1 cut(s)	293
TauI	GCSGC	1 cut(s)	79
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	364
Tth111I	GACNNNGTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	18, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.