Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Reverse (-)

66198285 .. 66198674

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG492800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCATTGCTAGCCTTATGGCTTATTGTTTCTGCTTACTTCTTCTTGCTTTCGTACTGTTGCTTGGAGCGCCGCCTTGGATTTTGTTTCCAGCGGTAGTTGTTTGGGACGGAAGTTATGGTTTTCTGGTCGCTTCTCTGAGGCCGAGCTCTGACAGCGTGGATCTGAATTGGTCTGTATCGGATCGTTATGGCTGGGTCTCGGATCGGAGTCGTCCGACTGGCCTCTTTGAGGTGGTTGGGTGTCATCGTAGGGCGGACATGGTCGTTGATCTGGATGACAGATGTCCGGGCTTCAAGCCAGATTTTGCTGGTTTTGGTTTGAAGGACATGGTGGATGATTGTAATGGTCGCACTGATGTTAGACATGGTGGTTCGCTGCAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

5.13

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	74, 95, 257
AclI	AACGTT	1 cut(s)	385
AclWI	GGATC	3 cut(s)	171, 192, 213
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	298, 325
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	3 cut(s)	171, 192, 213
AoxI	GGCC	3 cut(s)	3, 143, 223
ApeKI	GCWGC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	291
AsuNHI	GCTAGC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	2 cut(s)	74, 380
BlsI	GCNGC	2 cut(s)	75, 381
Bme1390I	CCNGG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	15
BoxI	GACNNNNGTC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	283, 343
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	3 cut(s)	5, 145, 225
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	5, 145, 225
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	163, 184, 205, 271
BspACI	CCGC	3 cut(s)	74, 95, 257
BspANI	GGCC	3 cut(s)	5, 145, 225
BspCNI	CTCAG	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	171, 192, 213
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	4 cut(s)	163, 184, 205, 271
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	283, 343
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	166, 187, 208, 274
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	4 cut(s)	163, 184, 205, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 156
BstPAI	GACNNNNGTC	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	5, 145, 225
BtsCI	GGATG	2 cut(s)	283, 343
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	3 cut(s)	262, 331, 368
CviJI	RGCY	9 cut(s)	5, 15, 23, 145, 150, 195, 225, 294, 301
CviKI_1	RGCY	9 cut(s)	5, 15, 23, 145, 150, 195, 225, 294, 301
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	165, 186, 207, 273
DpnII	GATC	4 cut(s)	163, 184, 205, 271
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	265, 334, 371
FaiI	YATR	6 cut(s)	20, 120, 192, 263, 332, 369
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	261, 330, 367
Fnu4HI	GCNGC	2 cut(s)	74, 380
FokI	GGATG	2 cut(s)	290, 350
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	74, 380
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	74, 380
GsaI	CCCAGC	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	3 cut(s)	5, 145, 225
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	265, 334, 371
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	290
Hpy188I	TCNGA	7 cut(s)	141, 154, 168, 184, 205, 210, 219
Hpy188III	TCNNGA	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 156
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	3 cut(s)	265, 334, 371
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	163, 184, 205, 271
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	105, 113, 181, 207, 260, 297, 303, 315
Lsp1109I	GCAGC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	385
MalI	GATC	4 cut(s)	165, 186, 207, 273
MboI	GATC	4 cut(s)	163, 184, 205, 271
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	152
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	3 cut(s)	135, 226, 236
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	70, 156
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	163, 184, 205, 271
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	3 cut(s)	265, 334, 371
NmeAIII	GCCGAG	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	75, 381
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PshAI	GACNNNNGTC	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	152
Psp1406I	AACGTT	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	152
SatI	GCNGC	2 cut(s)	74, 380
Sau3AI	GATC	4 cut(s)	163, 184, 205, 271
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	3 cut(s)	152, 237, 388
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	74, 95, 257
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	388
TasI	AATT	1 cut(s)	169
TauI	GCSGC	1 cut(s)	76
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	379
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	230
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.