Rh3AG209400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001119
Physical Location & Seq
Forward (+)
20956875 .. 20958416
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG209400.1

Sequence Viewer

Length: 942 bp
ATGGCTGGTGCCACAAATGGGATCGCAGCGCTGTCCTTTCCCGGCGTGGTTTACGTCAACCGGGGGCGTGCCAGTGGTCATTTTTTTCTAGTTTTCCTTCTCTTTGTACTTGCTGGTTGCAGCGTGATGGATCTGGATTTGCTTTTGGTTCCTGCTGGGAGGGTCGACGGAGGTGCCATCGATCCTTGGAGGTGGAGGGGGTTCCGGCTATCAGGGTCTAGCGTCGTCGATATCGGAGGCGTGGATGCCAGTGTCAGTGCTTGGGTGGGTTGCGGGGCCGCAGGTGGGCAAGGGATCGATCGTGGCTGGTTTGTTGATGGCCTGAATTCCAACATAGCCCGGCTGATGGAATCTGAAGCCTTGAGATGGCGAAGCTTCCCGATGACTAGGGCGGACATGGTCGTTGATTTGGATGATAGATGGTTGGGTTTCAAGGGTTTCAAGCCAGATTTTGCTGGTTCTGGTTTGAAGGACGGGGTGGATGATTGCAATGGTCGTACTGATGTTAGACATGGAGGTTCGCTGCAATGTCGAAGAGTTGCCGGTGTTGGGTTAGCCTGGCTAGATCAGGTGACCGATCTAAGCTTGGTTGCTGTGATGGTGGAGCTCTCTACTGGCTGCCAGATCCAGGCATTTTGGCTCCCGTTTGCTGGTGGAGCAGGTGGCGTTGGTGGCGGCGGTGGATTTTTCGGTGGCAGCTGGACGGAGGCTGTAGACGATGGAGGCTGGTCTTGGTGGGTGGCTTGGGCCTCCATGTGGATCTACTTCTTTGGGATGCAAAATGCCACAAGTTACAAAATTAATCACGTTTTAGACTATCTGGTGAATGCGGACAAAACCGACACATCTCTTGAAAAGGTTGAAGGGATTAAAAATAGGAGCACAACAACTGAATCCAACTTCATGATCATTATGTCCTTAAATCATAACAAGATGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

33.7

Weight (kDa)

5.21

Isoelectric Point (pI)

25.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 272, 650
Acc36I ACCTGC 2 cut(s) 272, 650
AccB1I GGYRCC 2 cut(s) 8, 173
AccI GTMKAC 2 cut(s) 165, 714
AciI CCGC 6 cut(s) 273, 279, 392, 675, 678, 830
AclWI GGATC 6 cut(s) 29, 138, 176, 302, 619, 767
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 2 cut(s) 108, 499
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 8 cut(s) 18, 285, 346, 366, 549, 628, 650, 756
AgsI TTSAA 5 cut(s) 433, 442, 469, 854, 863
AjnI CCWGG 2 cut(s) 557, 627
AluBI AGCT 4 cut(s) 375, 585, 607, 699
AluI AGCT 4 cut(s) 375, 585, 607, 699
Alw21I GWGCWC 2 cut(s) 609, 884
AlwI GGATC 6 cut(s) 29, 138, 176, 302, 619, 767
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 3 cut(s) 276, 319, 747
ApeKI GCWGC 5 cut(s) 26, 120, 523, 618, 696
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 801
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 276, 747
AsuC2I CCSGG 3 cut(s) 42, 62, 340
AsuHPI GGTGA 2 cut(s) 583, 835
BanI GGYRCC 2 cut(s) 8, 173
BanII GRGCYC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 609, 884
BbvI GCAGC 5 cut(s) 38, 132, 510, 605, 708
BccI CCATC 8 cut(s) 121, 185, 311, 340, 360, 414, 592, 713
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 2 cut(s) 559, 629
BclI TGATCA 1 cut(s) 906
BcnI CCSGG 3 cut(s) 42, 62, 340
BfaI CTAG 4 cut(s) 89, 219, 387, 563
BfmI CTRYAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 2 cut(s) 272, 650
BisI GCNGC 7 cut(s) 27, 121, 279, 524, 619, 676, 697
BlsI GCNGC 7 cut(s) 28, 122, 280, 525, 620, 677, 698
Bme1390I CCNGG 5 cut(s) 42, 62, 340, 559, 629
BmgT120I GGNCC 2 cut(s) 276, 747
BmiI GGNNCC 6 cut(s) 10, 150, 175, 203, 277, 641
BmrFI CCNGG 5 cut(s) 42, 62, 340, 559, 629
BmsI GCATC 2 cut(s) 235, 765
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 3 cut(s) 42, 62, 340
Bsa29I ATCGAT 2 cut(s) 180, 297
BsaJI CCNNGG 2 cut(s) 61, 185
Bsc4I CCNNNNNNNGG 8 cut(s) 18, 285, 346, 366, 549, 628, 650, 756
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 3 cut(s) 72, 249, 619
Bse3DI GCAATG 2 cut(s) 496, 533
BseBI CCWGG 2 cut(s) 559, 629
BseCI ATCGAT 2 cut(s) 180, 297
BseDI CCNNGG 2 cut(s) 61, 185
BseGI GGATG 4 cut(s) 250, 418, 487, 780
BseLI CCNNNNNNNGG 8 cut(s) 18, 285, 346, 366, 549, 628, 650, 756
BseMI GCAATG 2 cut(s) 496, 533
BseNI ACTGG 3 cut(s) 72, 249, 619
BseXI GCAGC 5 cut(s) 38, 132, 510, 605, 708
BseYI CCCAGC 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 3 cut(s) 278, 321, 749
BshNI GGYRCC 2 cut(s) 8, 173
BshVI ATCGAT 2 cut(s) 180, 297
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 609, 884
BsiSI CCGG 5 cut(s) 42, 61, 205, 340, 543
BslI CCNNNNNNNGG 8 cut(s) 18, 285, 346, 366, 549, 628, 650, 756
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 3 cut(s) 278, 321, 749
Bsp1286I GDGCHC 2 cut(s) 609, 884
BspACI CCGC 6 cut(s) 273, 279, 392, 675, 678, 830
BspANI GGCC 3 cut(s) 278, 321, 749
BspDI ATCGAT 2 cut(s) 180, 297
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 6 cut(s) 10, 150, 175, 203, 277, 641
BspMI ACCTGC 2 cut(s) 272, 650
BspPI GGATC 6 cut(s) 29, 138, 176, 302, 619, 767
BspT107I GGYRCC 2 cut(s) 8, 173
BsrDI GCAATG 2 cut(s) 496, 533
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 3 cut(s) 72, 249, 619
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 2 cut(s) 61, 185
BssT1I CCWWGG 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 559, 629
Bst6I CTCTTC 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 581
BstEII GGTNACC 1 cut(s) 571
BstF5I GGATG 4 cut(s) 250, 418, 487, 780
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 656, 672
BstNI CCWGG 2 cut(s) 559, 629
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 5 cut(s) 40, 60, 338, 557, 627
BstSFI CTRYAG 1 cut(s) 711
BstV1I GCAGC 5 cut(s) 38, 132, 510, 605, 708
BstX2I RGATCY 3 cut(s) 130, 624, 759
BstYI RGATCY 3 cut(s) 130, 624, 759
Bsu15I ATCGAT 2 cut(s) 180, 297
BsuRI GGCC 3 cut(s) 278, 321, 749
BsuTUI ATCGAT 2 cut(s) 180, 297
BtsCI GGATG 4 cut(s) 250, 418, 487, 780
BtsIMutI CAGTG 3 cut(s) 79, 256, 262
BveI ACCTGC 2 cut(s) 272, 650
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 903
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 2 cut(s) 276, 747
ClaI ATCGAT 2 cut(s) 180, 297
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 107, 498
CviAII CATG 4 cut(s) 397, 512, 754, 904
CviQI GTAC 2 cut(s) 107, 498
DdeI CTNAG 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
EciI GGCGGA 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 609
Eco32I GATATC 1 cut(s) 232
Eco47III AGCGCT 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 557, 627
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 4 cut(s) 400, 515, 757, 907
FaiI YATR 7 cut(s) 335, 398, 513, 755, 905, 914, 927
FatI CATG 4 cut(s) 396, 511, 753, 903
FauI CCCGC 1 cut(s) 266
FbaI TGATCA 1 cut(s) 906
FblI GTMKAC 2 cut(s) 165, 714
Fnu4HI GCNGC 7 cut(s) 27, 121, 279, 524, 619, 676, 697
FokI GGATG 4 cut(s) 257, 425, 494, 787
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 7 cut(s) 27, 121, 279, 524, 619, 676, 697
FspBI CTAG 4 cut(s) 89, 219, 387, 563
GlaI GCGC 1 cut(s) 30
GluI GCNGC 7 cut(s) 27, 121, 279, 524, 619, 676, 697
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 278, 321, 749
HapII CCGG 5 cut(s) 42, 61, 205, 340, 543
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 31
Hin1II CATG 4 cut(s) 400, 515, 757, 907
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 2 cut(s) 58, 166
HindII GTYRAC 2 cut(s) 58, 166
HindIII AAGCTT 2 cut(s) 373, 583
HinfI GANTC 2 cut(s) 350, 893
HpaII CCGG 5 cut(s) 42, 61, 205, 340, 543
HphI GGTGA 2 cut(s) 583, 835
Hpy166II GTNNAC 4 cut(s) 52, 58, 166, 715
Hpy188I TCNGA 2 cut(s) 236, 355
Hpy188III TCNNGA 4 cut(s) 134, 379, 851, 904
Hpy8I GTNNAC 4 cut(s) 52, 58, 166, 715
Hpy99I CGWCG 3 cut(s) 170, 227, 230
HpyAV CCTTC 3 cut(s) 107, 463, 857
HpyCH4IV ACGT 2 cut(s) 54, 807
HpyCH4V TGCA 4 cut(s) 120, 489, 526, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 672
HpyF3I CTNAG 1 cut(s) 581
HpySE526I ACGT 2 cut(s) 54, 807
Hsp92II CATG 4 cut(s) 400, 515, 757, 907
HspAI GCGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 906
LmnI GCTCC 4 cut(s) 604, 645, 656, 879
Lsp1109I GCAGC 5 cut(s) 38, 132, 510, 605, 708
LweI GCATC 2 cut(s) 235, 765
MaeI CTAG 4 cut(s) 89, 219, 387, 563
MaeII ACGT 2 cut(s) 54, 807
MaeIII GTNAC 2 cut(s) 571, 791
MboII GAAGA 1 cut(s) 546
MflI RGATCY 3 cut(s) 130, 624, 759
MhlI GDGCHC 2 cut(s) 609, 884
MluCI AATT 2 cut(s) 325, 798
MmeI TCCRAC 2 cut(s) 354, 921
MnlI CCTC 9 cut(s) 153, 164, 183, 189, 230, 509, 700, 716, 760
MseI TTAA 4 cut(s) 801, 870, 920, 940
MspA1I CMGCKG 1 cut(s) 699
MspI CCGG 5 cut(s) 42, 61, 205, 340, 543
MspR9I CCNGG 5 cut(s) 42, 62, 340, 559, 629
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 2 cut(s) 559, 629
MwoI GCNNNNNNNGC 2 cut(s) 656, 672
NciI CCSGG 3 cut(s) 42, 62, 340
NlaIII CATG 4 cut(s) 400, 515, 757, 907
NlaIV GGNNCC 6 cut(s) 10, 150, 175, 203, 277, 641
NmuCI GTSAC 1 cut(s) 571
PagI TCATGA 1 cut(s) 903
PaqCI CACCTGC 2 cut(s) 272, 650
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 2 cut(s) 350, 893
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 7 cut(s) 28, 122, 280, 525, 620, 677, 698
Ple19I CGATCG 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 557, 627
PspEI GGTNACC 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 2 cut(s) 557, 627
PspN4I GGNNCC 6 cut(s) 10, 150, 175, 203, 277, 641
PspPI GGNCC 2 cut(s) 276, 747
PsuI RGATCY 3 cut(s) 130, 624, 759
PsyI GACNNNGTC 1 cut(s) 398
PvuI CGATCG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 699
RsaI GTAC 2 cut(s) 108, 499
RsaNI GTAC 2 cut(s) 107, 498
SacI GAGCTC 1 cut(s) 609
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 4 cut(s) 801, 870, 920, 940
SatI GCNGC 7 cut(s) 27, 121, 279, 524, 619, 676, 697
Sau96I GGNCC 2 cut(s) 276, 747
ScrFI CCNGG 5 cut(s) 42, 62, 340, 559, 629
SduI GDGCHC 2 cut(s) 609, 884
SfaNI GCATC 2 cut(s) 235, 765
SfcI CTRYAG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 2 cut(s) 325, 798
SsiI CCGC 6 cut(s) 273, 279, 392, 675, 678, 830
SspMI CTAG 4 cut(s) 89, 219, 387, 563
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 5 cut(s) 40, 60, 338, 557, 627
StyI CCWWGG 1 cut(s) 185
TaiI ACGT 2 cut(s) 57, 810
TaqI TCGA 5 cut(s) 165, 180, 228, 297, 532
TaqII GACCGA 1 cut(s) 590
TasI AATT 2 cut(s) 325, 798
TatI WGTACW 1 cut(s) 106
TauI GCSGC 2 cut(s) 281, 678
TfiI GAWTC 2 cut(s) 350, 893
Tru1I TTAA 4 cut(s) 801, 870, 920, 940
Tru9I TTAA 4 cut(s) 801, 870, 920, 940
TscAI CASTG 3 cut(s) 79, 256, 262
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 5 cut(s) 26, 120, 523, 618, 696
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 1 cut(s) 892
TspGWI ACGGA 2 cut(s) 183, 719
TspRI CASTG 3 cut(s) 79, 256, 262
Tth111I GACNNNGTC 1 cut(s) 398
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 1 cut(s) 325
XmiI GTMKAC 2 cut(s) 165, 714
XspI CTAG 4 cut(s) 89, 219, 387, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.