Rh2AG355400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001119
Physical Location & Seq
Forward (+)
52367273 .. 52367896
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG355400.1

Sequence Viewer

Length: 624 bp
ATGGCCATGGCCATTGCTACCCTTGTGGCTTATTGTTTCTTGCTTCTACTTGCTTTTGTACTGTTGCTTGGAGTGCCGCCTTGGATTTGGTTCCCAGCGGTTGTTGTCTGGGAAGGCAGTTATGGTTTTCTGGTAGCTTCTCTAAGGCCGAGCTCTAACAGCGTGGATCTGAATTGGTCTGTATCGAATCGATACGACTGGGTCTTGGATCGGAGTCGTCCGGCTGGCCTATTTGCGGTGGTTGGGTGTCGTCGTAAGGCAGACATGGTCGTTCTTGATTTGGATTACAACTGTTCGAGTTTCAAGCCAAATTTTGTTGGTTCTGGTTTGAAGGACATGGTGGATGATCGCAATGTTCGCACTGATGTTAGACATGGTGGTTCGCTGCAATGTCGAAGAGTTGCCAGAGTTAGGTTGACCTGGCTGGATCAGGTGACTGATCTAAGTTTGGTTGATGTGATGGTGGCGTCCTCTACTGGCTGCCAGATCAAGGCACTCTGGTTTCCGGATGCTGGTGAAACAGGTTGCGTTGGCATCTGCAGTGAACTCTTCGATGGCAGCTGGAAGGAGGCTGGTCTTGGTGGAAGGCTTGGGCCTCCATGTGGGCTTGCTTCTTTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.55

Weight (kDa)

6.55

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 3 cut(s) 77, 98, 236
AclWI GGATC 3 cut(s) 174, 216, 435
AcoI YGGCCR 2 cut(s) 3, 9
AcsI RAATTY 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 5 cut(s) 235, 411, 490, 512, 602
AgsI TTSAA 2 cut(s) 304, 331
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 3 cut(s) 137, 153, 561
AluI AGCT 3 cut(s) 137, 153, 561
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 3 cut(s) 174, 216, 435
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 5 cut(s) 3, 9, 146, 226, 593
ApeKI GCWGC 3 cut(s) 385, 480, 558
ApoI RAATTY 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 445, 527
BalI TGGCCA 2 cut(s) 5, 11
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 372, 467, 570
BccI CCATC 2 cut(s) 454, 548
BciT130I CCWGG 1 cut(s) 421
BfaI CTAG 1 cut(s) 622
BfmI CTRYAG 1 cut(s) 538
BisI GCNGC 4 cut(s) 77, 386, 481, 559
BlsI GCNGC 4 cut(s) 78, 387, 482, 560
Bme1390I CCNGG 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 421
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 499, 543
BmuI ACTGGG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 6, 80
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 5 cut(s) 235, 411, 490, 512, 602
Bse1I ACTGG 2 cut(s) 203, 481
Bse3DI GCAATG 3 cut(s) 12, 358, 395
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 1 cut(s) 421
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 2 cut(s) 349, 514
BseLI CCNNNNNNNGG 5 cut(s) 235, 411, 490, 512, 602
BseMI GCAATG 3 cut(s) 12, 358, 395
BseNI ACTGG 2 cut(s) 203, 481
BseXI GCAGC 3 cut(s) 372, 467, 570
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 5 cut(s) 5, 11, 148, 228, 595
BshVI ATCGAT 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 221, 506
BslI CCNNNNNNNGG 5 cut(s) 235, 411, 490, 512, 602
BsnI GGCC 5 cut(s) 5, 11, 148, 228, 595
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 505
Bsp143I GATC 6 cut(s) 166, 208, 346, 427, 439, 486
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 77, 98, 236
BspANI GGCC 5 cut(s) 5, 11, 148, 228, 595
BspDI ATCGAT 1 cut(s) 190
BspEI TCCGGA 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 542
BspPI GGATC 3 cut(s) 174, 216, 435
BsrDI GCAATG 3 cut(s) 12, 358, 395
BsrI ACTGG 2 cut(s) 203, 481
BssECI CCNNGG 2 cut(s) 6, 80
BssMI GATC 6 cut(s) 166, 208, 346, 427, 439, 486
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 2 cut(s) 6, 80
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 63, 293
Bst6I CTCTTC 2 cut(s) 391, 554
BstACI GRCGYC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 226, 609
BstDEI CTNAG 2 cut(s) 143, 443
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 349, 514
BstKTI GATC 6 cut(s) 169, 211, 349, 430, 442, 489
BstMBI GATC 6 cut(s) 166, 208, 346, 427, 439, 486
BstMWI GCNNNNNNNGC 3 cut(s) 73, 159, 357
BstNI CCWGG 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 538
BstV1I GCAGC 3 cut(s) 372, 467, 570
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 5 cut(s) 5, 11, 148, 228, 595
BsuTUI ATCGAT 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 349, 514
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 360, 547
Cac8I GCNNGC 2 cut(s) 226, 609
Cfr13I GGNCC 1 cut(s) 593
ClaI ATCGAT 1 cut(s) 190
CseI GACGC 1 cut(s) 456
Csp6I GTAC 1 cut(s) 59
CviAII CATG 5 cut(s) 7, 265, 337, 374, 600
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 143, 443
DpnI GATC 6 cut(s) 168, 210, 348, 429, 441, 488
DpnII GATC 6 cut(s) 166, 208, 346, 427, 439, 486
EaeI YGGCCR 2 cut(s) 3, 9
Eam1104I CTCTTC 2 cut(s) 391, 554
EarI CTCTTC 2 cut(s) 391, 554
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 6, 80
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 6, 80
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 6, 80
FaeI CATG 5 cut(s) 10, 268, 340, 377, 603
FaiI YATR 6 cut(s) 8, 123, 266, 338, 375, 601
FatI CATG 5 cut(s) 6, 264, 336, 373, 599
Fnu4HI GCNGC 4 cut(s) 77, 386, 481, 559
FokI GGATG 2 cut(s) 356, 521
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 4 cut(s) 77, 386, 481, 559
FspBI CTAG 1 cut(s) 622
GluI GCNGC 4 cut(s) 77, 386, 481, 559
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 5 cut(s) 5, 11, 148, 228, 595
HapII CCGG 2 cut(s) 221, 506
HgaI GACGC 1 cut(s) 456
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 5 cut(s) 10, 268, 340, 377, 603
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 2 cut(s) 187, 214
HpaII CCGG 2 cut(s) 221, 506
HphI GGTGA 2 cut(s) 445, 527
Hpy166II GTNNAC 2 cut(s) 417, 545
Hpy188I TCNGA 2 cut(s) 171, 213
Hpy188III TCNNGA 2 cut(s) 275, 506
Hpy8I GTNNAC 2 cut(s) 417, 545
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 4 cut(s) 107, 325, 559, 579
HpyCH4III ACNGT 2 cut(s) 63, 293
HpyCH4V TGCA 2 cut(s) 388, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 159, 357
HpyF3I CTNAG 2 cut(s) 143, 443
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 5 cut(s) 10, 268, 340, 377, 603
Kpn2I TCCGGA 1 cut(s) 505
Kzo9I GATC 6 cut(s) 166, 208, 346, 427, 439, 486
Lsp1109I GCAGC 3 cut(s) 372, 467, 570
LweI GCATC 2 cut(s) 499, 543
MaeI CTAG 1 cut(s) 622
MaeIII GTNAC 1 cut(s) 433
MalI GATC 6 cut(s) 168, 210, 348, 429, 441, 488
MboI GATC 6 cut(s) 166, 208, 346, 427, 439, 486
MboII GAAGA 2 cut(s) 408, 541
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 2 cut(s) 5, 11
MluCI AATT 2 cut(s) 172, 310
MluNI TGGCCA 2 cut(s) 5, 11
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 3 cut(s) 481, 562, 606
Mox20I TGGCCA 2 cut(s) 5, 11
MroI TCCGGA 1 cut(s) 505
MscI TGGCCA 2 cut(s) 5, 11
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 2 cut(s) 98, 561
MspI CCGG 2 cut(s) 221, 506
MspR9I CCNGG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 73, 159, 357
NcoI CCATGG 1 cut(s) 6
NdeII GATC 6 cut(s) 166, 208, 346, 427, 439, 486
NlaIII CATG 5 cut(s) 10, 268, 340, 377, 603
NlaIV GGNNCC 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 2 cut(s) 200, 266
PkrI GCNGC 4 cut(s) 78, 387, 482, 560
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 593
PstI CTGCAG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 2 cut(s) 200, 266
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 155
SatI GCNGC 4 cut(s) 77, 386, 481, 559
Sau3AI GATC 6 cut(s) 166, 208, 346, 427, 439, 486
Sau96I GGNCC 1 cut(s) 593
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 139, 155, 416, 422, 435, 526, 563
SfaNI GCATC 2 cut(s) 499, 543
SfcI CTRYAG 1 cut(s) 538
Sse9I AATT 2 cut(s) 172, 310
SsiI CCGC 3 cut(s) 77, 98, 236
SspMI CTAG 1 cut(s) 622
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 2 cut(s) 6, 80
TaaI ACNGT 2 cut(s) 63, 293
TaqI TCGA 5 cut(s) 185, 190, 296, 394, 552
TasI AATT 2 cut(s) 172, 310
TatI WGTACW 1 cut(s) 58
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 2 cut(s) 367, 547
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 3 cut(s) 385, 480, 558
Tsp45I GTSAC 1 cut(s) 433
TspRI CASTG 2 cut(s) 367, 547
Tth111I GACNNNGTC 2 cut(s) 200, 266
XapI RAATTY 1 cut(s) 310
XspI CTAG 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.