Rh3AG136400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
11904621 .. 11907794
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG136400.1

Sequence Viewer

Length: 216 bp
ATGGCTTCCTTGTTTAAGCATATAATTCATAGAGGACGACCACGAGTAATCTGGTGGCTAAGCGTTCCTTTCTCATTGTTGCTTGGAGCGCCGCCTTGGTGTGGATTCCCTGTGGTTGCTGTTTGGGGTGGTAGTTTTGATGTTTGGGTGGCAGATATGAGGCCGAGCTCTATCGGCGTGGTTCGGGTTTGGTCTGAATTGGATAGGCGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.12

Weight (kDa)

10.56

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 101
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw21I GWGCWC 1 cut(s) 170
AoxI GGCC 1 cut(s) 161
AspLEI GCGC 2 cut(s) 91, 210
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 170
BfaI CTAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 1 cut(s) 92
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 101
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 170
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 163
BspFNI CGCG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 95
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 2 cut(s) 91, 210
BstMWI GCNNNNNNNGC 2 cut(s) 88, 174
BstUI CGCG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 163
CfoI GCGC 2 cut(s) 91, 210
CviJI RGCY 4 cut(s) 5, 58, 163, 168
CviKI_1 RGCY 4 cut(s) 5, 58, 163, 168
DdeI CTNAG 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 95
FaiI YATR 4 cut(s) 21, 23, 30, 158
FalI AAGNNNNNCTT 2 cut(s) 52, 84
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 214
GlaI GCGC 2 cut(s) 90, 209
GluI GCNGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 1 cut(s) 163
HhaI GCGC 2 cut(s) 91, 210
Hin6I GCGC 2 cut(s) 89, 208
HinP1I GCGC 2 cut(s) 89, 208
HinfI GANTC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 174
HpyF3I CTNAG 1 cut(s) 59
HspAI GCGC 2 cut(s) 89, 208
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 37, 123
MaeI CTAG 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 2 cut(s) 24, 197
MnlI CCTC 2 cut(s) 26, 153
MseI TTAA 1 cut(s) 15
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 88, 174
NmeAIII GCCGAG 1 cut(s) 189
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 170
SacI GAGCTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 170
SetI ASST 1 cut(s) 170
Sse9I AATT 2 cut(s) 24, 197
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 214
SstI GAGCTC 1 cut(s) 170
StyI CCWWGG 1 cut(s) 95
TasI AATT 2 cut(s) 24, 197
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 48
XspI CTAG 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.